==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 24-DEC-08 2KCP . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S8E; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS . AUTHOR G.LIU,P.ROSSI,D.WANG,C.NWOSU,L.OWENS,R.XIAO,J.LIU,M.C.BARAN, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8684.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 25 25.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 103 0, 0.0 2,-2.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -96.5 -12.3 40.1 -33.0 2 2 A D + 0 0 125 1,-0.1 2,-1.1 2,-0.0 0, 0.0 -0.139 360.0 92.0 43.6 -68.0 -10.6 41.5 -29.9 3 3 A R + 0 0 218 -2,-2.4 2,-0.5 1,-0.0 -1,-0.1 -0.350 58.4 178.7 -57.0 92.9 -13.2 40.1 -27.4 4 4 A R - 0 0 229 -2,-1.1 2,-0.1 2,-0.0 -1,-0.0 -0.894 7.0-164.9-102.5 123.3 -11.6 36.7 -26.5 5 5 A V - 0 0 115 -2,-0.5 -1,-0.0 1,-0.0 3,-0.0 -0.289 33.4-100.2 -99.5-177.0 -13.6 34.6 -24.0 6 6 A R - 0 0 220 1,-0.1 2,-0.8 -2,-0.1 3,-0.1 0.868 37.9-173.4 -74.0 -41.5 -12.7 31.5 -21.9 7 7 A L + 0 0 141 1,-0.2 -1,-0.1 2,-0.0 -2,-0.0 0.117 31.2 142.5 72.3 -27.3 -14.5 28.9 -24.2 8 8 A I + 0 0 112 -2,-0.8 -1,-0.2 1,-0.1 3,-0.1 -0.236 18.0 166.3 -51.8 122.4 -13.8 26.1 -21.6 9 9 A R + 0 0 236 1,-0.3 2,-0.3 -3,-0.1 -1,-0.1 0.840 53.7 25.6-100.4 -72.2 -16.8 23.7 -21.4 10 10 A T + 0 0 127 2,-0.0 -1,-0.3 0, 0.0 2,-0.2 -0.706 54.4 159.4-106.8 150.4 -16.1 20.4 -19.5 11 11 A R + 0 0 229 -2,-0.3 2,-0.2 2,-0.1 -3,-0.0 -0.808 37.1 58.9-169.2 122.8 -13.5 19.6 -16.8 12 12 A G - 0 0 73 -2,-0.2 -2,-0.0 2,-0.0 0, 0.0 -0.499 66.4 -94.4 132.7 156.5 -13.5 16.7 -14.2 13 13 A G - 0 0 79 -2,-0.2 2,-0.2 1,-0.1 -2,-0.1 0.228 30.6-146.8 -84.0-153.0 -13.4 12.9 -14.1 14 14 A N - 0 0 156 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.843 47.3 -35.1-158.4-169.9 -16.2 10.3 -13.7 15 15 A T - 0 0 127 -2,-0.2 2,-0.1 1,-0.1 0, 0.0 -0.526 66.3-142.1 -65.0 114.6 -17.0 6.8 -12.2 16 16 A K - 0 0 120 -2,-0.5 2,-0.2 1,-0.1 -1,-0.1 -0.352 9.6-115.7 -77.9 158.2 -13.7 4.8 -12.6 17 17 A V - 0 0 103 1,-0.1 3,-0.1 -2,-0.1 -1,-0.1 -0.497 38.7 -92.7 -85.5 161.9 -13.5 1.1 -13.4 18 18 A R > - 0 0 163 1,-0.2 2,-0.8 -2,-0.2 3,-0.8 -0.146 60.7 -66.8 -66.3 168.8 -12.1 -1.5 -11.0 19 19 A L T 3 S+ 0 0 58 62,-2.2 -1,-0.2 1,-0.2 4,-0.1 -0.450 105.8 90.4 -58.6 101.6 -8.4 -2.6 -11.0 20 20 A A T 3 S+ 0 0 61 -2,-0.8 -1,-0.2 2,-0.1 -2,-0.0 0.175 87.0 37.6-159.9 -53.9 -8.2 -4.3 -14.3 21 21 A S S < S+ 0 0 114 -3,-0.8 2,-0.3 1,-0.0 -2,-0.1 0.194 128.0 32.8 -91.7 14.5 -7.1 -1.8 -17.0 22 22 A D - 0 0 72 -4,-0.2 2,-0.4 2,-0.1 -2,-0.1 -0.983 69.8-137.5-163.1 158.6 -4.8 -0.2 -14.4 23 23 A T + 0 0 75 -2,-0.3 17,-0.4 -4,-0.1 2,-0.3 -0.944 45.0 116.0-132.0 113.6 -2.6 -1.1 -11.4 24 24 A R - 0 0 108 -2,-0.4 59,-0.5 15,-0.2 2,-0.3 -0.969 38.7-143.2-162.8 170.0 -2.5 1.1 -8.2 25 25 A I E -A 38 0A 0 13,-2.5 13,-2.5 -2,-0.3 2,-0.8 -0.998 25.6-114.5-147.0 139.3 -3.3 1.1 -4.5 26 26 A N E -Ab 37 84A 27 57,-3.1 59,-2.8 -2,-0.3 2,-0.5 -0.643 38.7-160.0 -74.0 106.8 -4.7 3.6 -1.9 27 27 A V E -Ab 36 85A 2 9,-2.6 9,-2.4 -2,-0.8 2,-0.7 -0.802 9.4-153.6 -97.6 123.6 -1.8 4.2 0.4 28 28 A V E -Ab 35 86A 60 57,-2.2 59,-2.6 -2,-0.5 7,-0.2 -0.857 14.6-143.8 -95.2 112.8 -2.3 5.6 3.9 29 29 A D > - 0 0 12 5,-3.1 4,-1.6 -2,-0.7 5,-0.3 -0.665 14.6-172.1 -79.5 115.0 0.8 7.4 5.1 30 30 A P T 4 S+ 0 0 70 0, 0.0 -1,-0.1 0, 0.0 58,-0.1 0.606 80.4 64.8 -82.6 -11.8 1.3 6.9 9.0 31 31 A E T 4 S+ 0 0 117 3,-0.1 -2,-0.0 1,-0.1 0, 0.0 0.871 129.1 1.2 -77.6 -39.6 4.2 9.4 9.1 32 32 A T T 4 S- 0 0 109 2,-0.1 -1,-0.1 -3,-0.1 -3,-0.0 0.591 97.6-114.4-121.3 -27.1 2.1 12.4 8.2 33 33 A G < + 0 0 57 -4,-1.6 2,-0.4 1,-0.3 -5,-0.0 0.771 62.1 146.0 92.0 29.2 -1.4 11.0 7.8 34 34 A K - 0 0 90 -5,-0.3 -5,-3.1 2,-0.0 2,-0.6 -0.800 40.6-144.2 -99.4 142.0 -1.9 11.6 4.0 35 35 A V E +A 28 0A 105 -2,-0.4 2,-0.4 -7,-0.2 -7,-0.2 -0.906 30.7 162.7-107.5 112.1 -3.9 9.3 1.7 36 36 A E E -A 27 0A 91 -9,-2.4 -9,-2.6 -2,-0.6 2,-0.7 -0.980 39.9-120.0-133.5 141.6 -2.4 8.9 -1.8 37 37 A I E -A 26 0A 94 -2,-0.4 -11,-0.2 -11,-0.2 2,-0.2 -0.699 37.2-170.3 -83.1 111.3 -2.8 6.4 -4.6 38 38 A A E -A 25 0A 0 -13,-2.5 -13,-2.5 -2,-0.7 2,-0.3 -0.672 24.2-107.9-103.4 157.2 0.6 4.7 -5.4 39 39 A E - 0 0 128 -2,-0.2 2,-0.8 -15,-0.2 28,-0.7 -0.646 29.6-124.5 -83.2 135.3 1.6 2.4 -8.3 40 40 A I E +C 66 0A 20 -17,-0.4 26,-0.2 -2,-0.3 3,-0.1 -0.707 33.2 170.9 -83.7 112.1 2.2 -1.2 -7.5 41 41 A R E S+ 0 0 177 24,-3.0 2,-0.4 -2,-0.8 25,-0.2 0.926 71.2 18.3 -82.8 -53.4 5.8 -2.2 -8.6 42 42 A N E -C 65 0A 85 23,-1.2 23,-2.1 1,-0.1 -1,-0.3 -0.984 56.3-158.4-124.8 132.3 6.0 -5.7 -7.0 43 43 A V S S+ 0 0 52 -2,-0.4 2,-0.4 21,-0.2 21,-0.1 0.268 79.3 67.5 -88.1 12.0 3.0 -7.8 -5.8 44 44 A V S S- 0 0 54 18,-0.1 2,-0.7 14,-0.1 21,-0.1 -0.997 78.1-133.6-138.7 136.4 5.3 -9.8 -3.5 45 45 A E - 0 0 43 -2,-0.4 19,-0.1 1,-0.1 -2,-0.0 -0.029 58.0 -99.5 -79.8 34.6 7.3 -8.8 -0.3 46 46 A N S S+ 0 0 132 -2,-0.7 -1,-0.1 1,-0.2 2,-0.1 0.740 75.4 152.5 57.4 26.1 10.5 -10.5 -1.6 47 47 A T - 0 0 65 1,-0.1 2,-0.7 0, 0.0 -1,-0.2 -0.331 49.2-110.5 -82.1 168.0 9.8 -13.6 0.6 48 48 A A S S- 0 0 84 1,-0.3 3,-0.2 -2,-0.1 -1,-0.1 -0.883 83.3 -23.9-107.2 109.6 10.9 -17.2 -0.1 49 49 A N S S- 0 0 118 -2,-0.7 2,-0.5 1,-0.1 -1,-0.3 0.972 77.8-121.4 55.4 88.2 8.0 -19.6 -1.1 50 50 A P > - 0 0 40 0, 0.0 3,-1.2 0, 0.0 4,-0.2 -0.439 20.8-163.9 -62.4 110.3 4.8 -18.1 0.5 51 51 A H T 3 S+ 0 0 174 -2,-0.5 -2,-0.0 1,-0.3 0, 0.0 0.473 84.9 70.8 -76.5 -1.1 3.4 -20.8 2.8 52 52 A F T 3 S- 0 0 114 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.171 118.7-107.7 -96.0 16.8 0.1 -18.9 2.8 53 53 A V < + 0 0 124 -3,-1.2 2,-2.3 1,-0.2 -2,-0.1 0.760 61.9 163.3 62.4 26.9 -0.5 -20.0 -0.8 54 54 A R + 0 0 45 -4,-0.2 2,-2.2 1,-0.1 -1,-0.2 -0.448 12.8 179.8 -78.0 72.6 0.2 -16.4 -1.9 55 55 A R S S- 0 0 225 -2,-2.3 3,-0.1 1,-0.2 -1,-0.1 -0.506 78.1 -59.6 -73.2 75.1 0.8 -17.2 -5.6 56 56 A N S S+ 0 0 119 -2,-2.2 2,-0.5 1,-0.2 -1,-0.2 0.657 103.9 144.2 54.4 17.4 1.5 -13.5 -6.5 57 57 A I - 0 0 91 -4,-0.1 2,-0.5 1,-0.0 -1,-0.2 -0.748 56.3-122.5 -92.5 125.5 -2.1 -12.9 -5.2 58 58 A I + 0 0 29 -2,-0.5 2,-0.3 -3,-0.1 -14,-0.1 -0.520 47.9 163.4 -68.0 113.6 -2.8 -9.7 -3.3 59 59 A T > - 0 0 7 -2,-0.5 3,-2.2 17,-0.1 14,-0.3 -0.902 44.8 -74.9-135.3 159.6 -4.1 -10.7 0.1 60 60 A R T 3 S+ 0 0 140 -2,-0.3 14,-0.2 1,-0.3 3,-0.1 -0.279 118.2 19.0 -54.5 129.1 -4.7 -9.3 3.6 61 61 A G T 3 S+ 0 0 42 12,-2.8 -1,-0.3 1,-0.3 2,-0.2 0.285 95.1 125.8 92.1 -11.4 -1.4 -8.9 5.5 62 62 A A < - 0 0 6 -3,-2.2 11,-3.0 11,-0.3 2,-0.5 -0.557 54.1-137.2 -80.7 145.4 0.7 -9.1 2.4 63 63 A V E - D 0 72A 3 9,-0.2 2,-0.3 -2,-0.2 9,-0.2 -0.911 18.2-167.8-109.0 124.6 3.2 -6.3 1.6 64 64 A V E - D 0 71A 1 7,-2.9 7,-2.9 -2,-0.5 2,-0.4 -0.761 21.7-118.8-107.4 154.9 3.6 -4.8 -1.9 65 65 A E E +CD 42 70A 42 -23,-2.1 -24,-3.0 -2,-0.3 -23,-1.2 -0.793 40.8 165.0 -94.5 133.4 6.3 -2.5 -3.3 66 66 A T E -C 40 0A 4 3,-2.0 3,-0.5 -2,-0.4 -26,-0.2 -0.769 54.6 -91.4-136.8 179.1 5.2 1.0 -4.5 67 67 A N S S+ 0 0 80 -28,-0.7 3,-0.1 1,-0.2 -27,-0.1 0.666 129.1 46.4 -69.1 -15.4 6.6 4.5 -5.5 68 68 A L S S- 0 0 51 1,-0.4 2,-0.3 -29,-0.2 -1,-0.2 0.566 122.5-104.1 -98.7 -13.9 6.0 5.5 -1.9 69 69 A G S S- 0 0 20 -3,-0.5 -3,-2.0 18,-0.0 2,-0.4 -0.934 70.9 -2.2 127.4-151.9 7.6 2.4 -0.4 70 70 A N E -DE 65 88A 11 18,-0.8 18,-3.3 -2,-0.3 2,-0.4 -0.643 61.6-168.2 -82.8 129.2 6.3 -0.8 1.2 71 71 A V E -DE 64 87A 0 -7,-2.9 -7,-2.9 -2,-0.4 2,-0.6 -0.965 14.2-138.9-122.8 133.7 2.5 -1.0 1.6 72 72 A R E -DE 63 86A 104 14,-2.6 14,-1.3 -2,-0.4 2,-0.6 -0.799 20.2-126.9 -94.6 121.1 0.4 -3.5 3.6 73 73 A V E + E 0 85A 1 -11,-3.0 -12,-2.8 -2,-0.6 -11,-0.3 -0.510 33.7 171.0 -65.9 111.3 -2.8 -4.9 2.0 74 74 A T + 0 0 64 10,-2.2 2,-0.3 -2,-0.6 11,-0.2 0.841 61.3 33.8 -91.5 -39.3 -5.5 -4.2 4.7 75 75 A S S S- 0 0 48 9,-1.3 9,-0.3 -16,-0.1 -1,-0.1 -0.781 93.7 -87.3-118.3 162.5 -8.6 -5.1 2.6 76 76 A R > - 0 0 127 -2,-0.3 3,-1.6 1,-0.1 2,-0.8 -0.399 50.6-100.0 -68.5 138.2 -9.4 -7.6 -0.2 77 77 A P T 3 S+ 0 0 66 0, 0.0 6,-0.2 0, 0.0 -1,-0.1 -0.427 108.9 52.0 -61.8 100.4 -8.7 -6.4 -3.8 78 78 A G T > + 0 0 47 4,-1.2 3,-2.2 -2,-0.8 2,-0.3 0.145 64.5 127.8 158.7 -25.7 -12.2 -5.4 -5.0 79 79 A Q G X S- 0 0 117 -3,-1.6 3,-2.2 1,-0.3 -1,-0.3 -0.422 99.0 -9.8 -60.1 119.4 -13.6 -3.0 -2.4 80 80 A D G 3 S- 0 0 116 1,-0.3 -1,-0.3 -2,-0.3 3,-0.1 0.612 123.4 -73.2 62.5 13.0 -14.7 0.2 -4.4 81 81 A G G < S+ 0 0 17 -3,-2.2 -62,-2.2 1,-0.3 -1,-0.3 0.534 117.8 86.0 78.0 8.3 -12.9 -1.5 -7.3 82 82 A V S < S- 0 0 24 -3,-2.2 -4,-1.2 -64,-0.2 2,-0.4 -0.814 76.4-113.6-135.0 168.2 -9.6 -0.6 -5.6 83 83 A I - 0 0 2 -59,-0.5 -57,-3.1 -2,-0.2 2,-0.4 -0.861 25.0-156.2-105.0 143.8 -7.1 -1.9 -3.0 84 84 A N E +b 26 0A 51 -2,-0.4 -10,-2.2 -9,-0.3 -9,-1.3 -0.966 23.7 146.1-123.6 135.8 -6.4 -0.1 0.3 85 85 A G E -bE 27 73A 2 -59,-2.8 -57,-2.2 -2,-0.4 2,-0.4 -0.910 39.3-104.8-154.2 179.3 -3.3 -0.4 2.5 86 86 A V E -bE 28 72A 47 -14,-1.3 -14,-2.6 -2,-0.3 2,-0.4 -0.927 31.2-116.9-118.3 141.5 -0.9 1.4 4.9 87 87 A L E + E 0 71A 17 -59,-2.6 -16,-0.2 -2,-0.4 2,-0.2 -0.627 50.7 151.8 -77.1 124.4 2.7 2.7 4.2 88 88 A I E - E 0 70A 26 -18,-3.3 -18,-0.8 -2,-0.4 2,-0.5 -0.744 47.7-103.9-140.3-175.9 5.3 0.8 6.3 89 89 A R + 0 0 161 -2,-0.2 3,-0.1 1,-0.1 -18,-0.0 -0.884 55.9 131.5-122.7 99.8 8.9 -0.3 6.4 90 90 A E + 0 0 95 -2,-0.5 -1,-0.1 1,-0.1 2,-0.1 0.795 57.0 55.9-111.3 -57.1 9.4 -4.1 5.7 91 91 A L S S- 0 0 62 1,-0.1 2,-0.4 2,-0.0 -21,-0.1 -0.400 80.7-116.6 -81.4 155.8 12.2 -4.5 3.1 92 92 A E + 0 0 140 -2,-0.1 2,-0.2 -3,-0.1 -1,-0.1 -0.784 34.5 175.0 -90.6 136.7 15.8 -3.2 3.4 93 93 A H + 0 0 170 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.641 13.1 143.9-150.1 83.6 16.8 -0.6 0.7 94 94 A H - 0 0 130 -2,-0.2 2,-0.1 1,-0.1 -2,-0.0 -0.752 54.6 -83.7-110.8 169.4 20.2 1.1 0.8 95 95 A H - 0 0 178 -2,-0.3 2,-0.5 1,-0.0 -1,-0.1 -0.380 36.1-142.7 -76.5 147.9 22.5 2.1 -2.1 96 96 A H - 0 0 154 -2,-0.1 2,-1.4 2,-0.0 -1,-0.0 -0.942 12.6-131.7-117.0 117.5 24.9 -0.3 -3.8 97 97 A H 0 0 174 -2,-0.5 -2,-0.0 1,-0.1 0, 0.0 -0.491 360.0 360.0 -64.1 90.9 28.3 0.7 -5.0 98 98 A H 0 0 220 -2,-1.4 -1,-0.1 0, 0.0 -2,-0.0 -0.480 360.0 360.0 -60.2 360.0 28.2 -0.9 -8.5