==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHAPERONE 29-DEC-08 2KCT . COMPND 2 MOLECULE: CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCME; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. . AUTHOR J.M.ARAMINI,P.ROSSI,H.LEE,A.LEMAK,H.WANG,E.L.FOOTE,M.JIANG, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6204.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 77.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 34.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 25 28.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 43 A M 0 0 245 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 113.4 -30.3 12.6 17.8 2 44 A A - 0 0 97 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.920 360.0-113.7-139.6 162.2 -27.2 10.4 18.4 3 45 A T - 0 0 141 -2,-0.3 0, 0.0 1,-0.0 0, 0.0 -0.888 41.5-165.0-101.3 105.6 -23.4 10.8 18.9 4 46 A P - 0 0 109 0, 0.0 3,-0.1 0, 0.0 2,-0.0 -0.048 30.6 -67.4 -80.7-176.5 -21.6 9.2 15.9 5 47 A Q S S- 0 0 136 1,-0.1 4,-0.1 2,-0.1 0, 0.0 -0.286 70.3 -74.5 -63.8 159.0 -17.9 8.2 15.3 6 48 A D > - 0 0 115 1,-0.1 3,-1.2 2,-0.1 -1,-0.1 -0.214 35.6-127.5 -60.4 145.2 -15.2 10.8 15.1 7 49 A K T 3 S+ 0 0 203 1,-0.3 -1,-0.1 -3,-0.1 -2,-0.1 0.885 108.4 51.9 -62.0 -41.9 -14.9 13.1 12.0 8 50 A L T 3 S+ 0 0 150 2,-0.0 2,-1.1 0, 0.0 -1,-0.3 -0.000 72.2 149.4 -89.3 27.5 -11.2 12.3 11.4 9 51 A H < - 0 0 116 -3,-1.2 2,-0.1 -4,-0.1 -4,-0.0 -0.516 39.7-148.1 -64.2 95.0 -11.8 8.5 11.6 10 52 A T - 0 0 70 -2,-1.1 2,-0.8 1,-0.1 58,-0.2 -0.372 17.0-107.8 -69.1 151.6 -8.9 7.4 9.2 11 53 A V E -A 67 0A 72 56,-2.4 56,-2.0 -2,-0.1 2,-0.6 -0.735 28.4-164.7 -96.7 105.5 -9.5 4.3 7.1 12 54 A R E -A 66 0A 104 -2,-0.8 2,-0.3 54,-0.2 54,-0.2 -0.829 14.9-175.7 -87.8 117.8 -7.4 1.3 8.2 13 55 A L E -A 65 0A 39 52,-1.9 52,-2.1 -2,-0.6 2,-0.3 -0.914 10.1-153.9-123.6 142.9 -7.4 -1.4 5.4 14 56 A F E +A 64 0A 115 -2,-0.3 24,-0.3 50,-0.2 2,-0.3 -0.918 35.2 103.8-121.8 141.2 -5.8 -4.9 5.4 15 57 A G E -A 63 0A 1 48,-1.7 48,-1.3 -2,-0.3 2,-0.3 -0.956 58.7 -74.7 178.3-161.3 -4.5 -7.1 2.5 16 58 A T E -AB 62 36A 31 20,-1.9 20,-2.6 46,-0.3 2,-0.3 -0.952 38.7-113.8-127.0 145.1 -1.5 -8.4 0.6 17 59 A V E - B 0 35A 2 44,-2.1 43,-1.2 -2,-0.3 2,-0.2 -0.615 30.2-145.3 -79.4 132.3 0.9 -6.7 -1.9 18 60 A A - 0 0 4 16,-1.2 16,-0.1 -2,-0.3 42,-0.1 -0.594 15.3-145.5 -91.9 156.6 0.9 -7.9 -5.5 19 61 A A S > S+ 0 0 75 -2,-0.2 3,-1.4 40,-0.1 2,-0.7 0.765 85.0 86.1 -82.0 -32.1 3.9 -8.2 -8.0 20 62 A D T 3 S+ 0 0 102 1,-0.3 14,-0.4 14,-0.1 -2,-0.1 -0.607 107.9 3.3 -77.3 108.8 1.5 -7.3 -10.8 21 63 A G T 3 S+ 0 0 24 -2,-0.7 2,-1.5 1,-0.2 -1,-0.3 0.563 79.3 152.4 90.4 12.2 1.3 -3.5 -11.0 22 64 A L < + 0 0 43 -3,-1.4 2,-0.5 11,-0.2 11,-0.2 -0.625 23.0 168.7 -73.2 90.2 3.9 -2.8 -8.2 23 65 A T E -C 32 0A 77 9,-2.1 9,-2.6 -2,-1.5 2,-0.1 -0.953 21.0-152.3-116.8 116.7 4.8 0.6 -9.8 24 66 A M E -C 31 0A 112 -2,-0.5 2,-0.3 7,-0.2 7,-0.3 -0.412 36.6 -80.6 -90.0 161.8 7.0 3.1 -7.8 25 67 A L > - 0 0 49 5,-1.7 3,-1.8 3,-0.2 2,-0.8 -0.480 49.2-117.4 -66.9 119.1 7.0 6.9 -8.1 26 68 A D T 3 S- 0 0 157 -2,-0.3 -1,-0.1 1,-0.3 -3,-0.0 -0.447 93.0 -16.9 -65.0 98.1 9.2 7.9 -11.1 27 69 A G T 3 S+ 0 0 92 -2,-0.8 -1,-0.3 1,-0.2 -2,-0.1 0.695 124.2 94.1 77.8 22.8 12.0 9.9 -9.6 28 70 A A S < S- 0 0 51 -3,-1.8 2,-0.6 2,-0.1 -1,-0.2 -0.977 84.6 -97.5-143.3 149.1 10.1 10.5 -6.3 29 71 A P S S+ 0 0 99 0, 0.0 22,-2.2 0, 0.0 2,-0.2 -0.611 82.8 59.3 -72.8 111.5 10.0 8.7 -2.8 30 72 A G E - D 0 50A 7 -2,-0.6 -5,-1.7 20,-0.3 2,-0.3 -0.851 63.1-117.3 156.3 179.3 6.9 6.3 -2.8 31 73 A V E -CD 24 49A 0 18,-2.5 18,-2.8 -7,-0.3 2,-0.4 -0.999 3.5-157.8-149.3 134.6 5.0 3.3 -4.3 32 74 A R E +CD 23 48A 104 -9,-2.6 -9,-2.1 -2,-0.3 2,-0.3 -0.947 32.2 152.5-104.1 138.7 1.7 2.6 -6.0 33 75 A F E - D 0 47A 0 14,-2.1 14,-2.3 -2,-0.4 2,-0.6 -0.961 47.8-103.2-155.3 163.6 0.6 -1.1 -5.9 34 76 A R E - D 0 46A 62 -14,-0.4 -16,-1.2 -2,-0.3 2,-0.8 -0.887 29.6-146.0 -98.0 115.2 -2.7 -3.1 -5.9 35 77 A L E -BD 17 45A 4 10,-2.9 10,-2.0 -2,-0.6 2,-0.7 -0.789 15.0-142.5 -79.7 108.9 -3.6 -4.3 -2.4 36 78 A E E -BD 16 44A 53 -20,-2.6 -20,-1.9 -2,-0.8 8,-0.2 -0.709 14.8-130.7 -78.0 110.4 -5.3 -7.7 -3.0 37 79 A D - 0 0 31 6,-2.3 6,-0.2 -2,-0.7 -22,-0.2 -0.463 6.3-145.6 -60.7 129.3 -8.2 -8.0 -0.5 38 80 A K S S+ 0 0 128 -24,-0.3 3,-0.3 1,-0.2 -1,-0.1 0.761 98.2 54.5 -72.7 -26.8 -7.9 -11.4 1.3 39 81 A D S S+ 0 0 153 1,-0.3 2,-0.4 4,-0.1 -1,-0.2 0.940 128.1 15.5 -68.7 -49.5 -11.8 -11.7 1.5 40 82 A N > - 0 0 74 3,-0.2 3,-1.5 1,-0.1 -3,-0.5 -0.939 69.7-164.0-131.5 103.3 -12.2 -11.3 -2.3 41 83 A T T 3 S+ 0 0 111 -2,-0.4 -3,-0.1 -3,-0.3 -1,-0.1 0.381 90.2 59.4 -76.1 4.6 -8.8 -11.8 -4.2 42 84 A S T 3 S+ 0 0 88 1,-0.1 2,-1.4 -6,-0.1 -1,-0.3 0.531 81.3 91.5-102.5 -15.9 -10.3 -10.1 -7.3 43 85 A K < + 0 0 111 -3,-1.5 -6,-2.3 -6,-0.2 2,-0.6 -0.694 58.8 171.5 -77.0 86.6 -10.9 -6.9 -5.3 44 86 A T E -D 36 0A 45 -2,-1.4 2,-0.4 -8,-0.2 -8,-0.2 -0.924 13.9-164.5-107.6 108.0 -7.6 -5.2 -6.1 45 87 A V E -D 35 0A 26 -10,-2.0 -10,-2.9 -2,-0.6 2,-1.1 -0.812 21.8-125.1-100.5 129.6 -7.4 -1.6 -4.8 46 88 A W E -De 34 75A 96 28,-0.5 30,-1.9 -2,-0.4 2,-0.4 -0.609 31.3-165.5 -81.4 98.2 -4.7 0.7 -6.2 47 89 A V E -De 33 76A 0 -14,-2.3 -14,-2.1 -2,-1.1 2,-0.5 -0.739 6.1-160.3 -89.0 130.6 -3.0 2.0 -3.0 48 90 A L E -De 32 77A 25 28,-2.6 30,-1.8 -2,-0.4 2,-0.4 -0.964 10.7-179.3-115.6 114.3 -0.7 5.0 -3.3 49 91 A Y E -De 31 78A 36 -18,-2.8 -18,-2.5 -2,-0.5 2,-0.3 -0.952 8.9-160.0-112.9 128.9 1.9 5.5 -0.5 50 92 A K E +D 30 0A 115 28,-0.7 -20,-0.3 -2,-0.4 2,-0.2 -0.862 51.4 38.4-107.1 148.1 4.3 8.5 -0.5 51 93 A G S S- 0 0 27 -22,-2.2 2,-0.5 -2,-0.3 -2,-0.1 -0.675 104.5 -7.3 113.8-168.2 7.5 8.7 1.6 52 94 A A - 0 0 86 -2,-0.2 -2,-0.1 -23,-0.1 0, 0.0 -0.529 62.7-150.3 -67.7 112.2 10.2 6.1 2.5 53 95 A V - 0 0 37 -2,-0.5 -23,-0.1 -23,-0.1 -2,-0.1 -0.805 25.7-116.1 -86.1 117.1 9.1 2.7 1.4 54 96 A P > - 0 0 45 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 -0.089 6.5-128.3 -59.4 151.3 10.6 0.0 3.8 55 97 A D T 3 S+ 0 0 138 1,-0.2 -2,-0.0 32,-0.0 0, 0.0 0.738 112.9 63.5 -65.7 -25.1 13.1 -2.7 2.5 56 98 A T T 3 S+ 0 0 36 31,-0.1 2,-0.7 27,-0.1 -1,-0.2 0.679 78.7 99.6 -71.2 -23.9 10.7 -5.2 4.2 57 99 A F < + 0 0 15 -3,-1.0 26,-0.0 26,-0.1 -4,-0.0 -0.605 52.7 152.5 -68.5 106.4 8.0 -4.1 1.7 58 100 A K > - 0 0 69 -2,-0.7 3,-1.9 27,-0.2 2,-0.7 -0.937 55.9 -90.1-133.3 155.8 8.1 -6.9 -1.0 59 101 A P T 3 S+ 0 0 77 0, 0.0 -41,-0.2 0, 0.0 -40,-0.1 -0.607 119.4 32.4 -68.1 110.3 5.5 -8.4 -3.4 60 102 A G T 3 S+ 0 0 57 -43,-1.2 2,-0.4 -2,-0.7 -42,-0.1 0.189 88.0 123.0 121.9 -11.7 3.9 -11.2 -1.4 61 103 A V < - 0 0 5 -3,-1.9 -44,-2.1 -43,-0.1 2,-0.5 -0.715 64.7-127.3 -81.5 124.4 4.2 -9.4 2.0 62 104 A E E -A 16 0A 58 -2,-0.4 22,-1.1 -46,-0.2 23,-0.3 -0.661 38.3-172.2 -70.8 119.0 0.8 -9.0 3.8 63 105 A V E -AF 15 83A 0 -48,-1.3 -48,-1.7 -2,-0.5 2,-0.5 -0.849 26.3-141.9-120.8 154.4 0.6 -5.3 4.7 64 106 A I E -AF 14 82A 22 18,-2.5 18,-1.2 -2,-0.3 2,-0.2 -0.979 25.9-172.1-112.5 115.1 -1.7 -3.0 6.8 65 107 A I E -AF 13 81A 0 -52,-2.1 -52,-1.9 -2,-0.5 2,-0.3 -0.656 7.0-162.8-100.9 162.8 -2.2 0.4 5.1 66 108 A E E +AF 12 80A 26 14,-1.8 14,-2.0 -54,-0.2 13,-1.2 -0.958 46.6 75.1-148.7 132.8 -4.0 3.5 6.6 67 109 A G E S-AF 11 78A 12 -56,-2.0 -56,-2.4 -2,-0.3 11,-0.2 -0.714 73.0 -84.0 171.2-117.5 -5.3 6.6 4.7 68 110 A G E - F 0 77A 22 9,-0.8 9,-2.2 -2,-0.2 2,-0.6 -0.828 13.4-123.4 179.8 146.3 -8.5 6.8 2.6 69 111 A L E - F 0 76A 90 7,-0.3 7,-0.2 -2,-0.2 5,-0.1 -0.896 38.2-142.2 -93.0 114.6 -10.0 6.2 -0.8 70 112 A A > - 0 0 41 -2,-0.6 3,-1.6 5,-0.6 2,-0.7 -0.593 21.0-106.8 -82.2 134.5 -11.5 9.6 -1.9 71 113 A P T 3 S+ 0 0 142 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.527 114.8 22.2 -57.7 104.4 -14.9 9.8 -3.9 72 114 A G T 3 S+ 0 0 81 -2,-0.7 2,-0.4 1,-0.4 -2,-0.0 -0.077 104.9 97.5 122.1 -29.9 -13.6 10.6 -7.4 73 115 A E < - 0 0 73 -3,-1.6 -1,-0.4 1,-0.1 4,-0.0 -0.778 58.6-157.4 -91.3 132.6 -10.0 9.3 -6.8 74 116 A D S S+ 0 0 140 -2,-0.4 -28,-0.5 -3,-0.1 2,-0.4 0.467 73.8 73.9 -87.4 -5.3 -9.2 5.8 -8.1 75 117 A T E S-e 46 0A 2 -30,-0.1 2,-0.7 -5,-0.1 -5,-0.6 -0.926 80.3-128.0-114.6 137.5 -6.2 5.4 -5.7 76 118 A F E -eF 47 69A 3 -30,-1.9 -28,-2.6 -2,-0.4 2,-1.2 -0.742 26.3-139.5 -78.3 111.6 -6.4 4.8 -1.9 77 119 A K E -eF 48 68A 103 -9,-2.2 -9,-0.8 -2,-0.7 2,-0.8 -0.628 17.9-161.9 -82.3 93.6 -4.1 7.5 -0.5 78 120 A A E -eF 49 67A 1 -30,-1.8 -28,-0.7 -2,-1.2 -11,-0.3 -0.722 14.9-176.5 -81.3 108.3 -2.2 5.6 2.3 79 121 A R E S+ 0 0 163 -13,-1.2 2,-0.3 -2,-0.8 -12,-0.2 0.654 77.1 28.8 -76.7 -19.6 -0.7 8.2 4.7 80 122 A T E - F 0 66A 46 -14,-2.0 -14,-1.8 -3,-0.1 2,-0.3 -0.965 68.5-161.2-138.6 157.1 1.0 5.3 6.6 81 123 A L E - F 0 65A 30 -2,-0.3 2,-0.4 -16,-0.2 -16,-0.2 -0.984 1.5-167.8-138.6 140.9 2.2 1.7 5.7 82 124 A M E - F 0 64A 86 -18,-1.2 -18,-2.5 -2,-0.3 2,-0.3 -0.965 4.8-163.8-136.5 118.8 2.9 -1.4 7.9 83 125 A T E - F 0 63A 33 -2,-0.4 -20,-0.2 -20,-0.2 -26,-0.1 -0.782 6.9-170.7-100.4 145.1 4.7 -4.5 6.6 84 126 A K S S+ 0 0 102 -22,-1.1 -1,-0.1 -2,-0.3 -21,-0.1 0.859 70.0 59.2-100.6 -53.8 4.6 -7.9 8.5 85 127 A C S S- 0 0 67 -23,-0.3 -27,-0.2 -29,-0.1 -1,-0.2 -0.690 72.4-156.8 -82.1 124.2 7.2 -10.1 6.8 86 128 A P - 0 0 59 0, 0.0 2,-1.8 0, 0.0 -1,-0.1 0.133 54.4 -41.8 -77.0-158.7 10.9 -8.7 6.8 87 129 A L 0 0 122 1,-0.2 -31,-0.1 -30,-0.0 -30,-0.0 -0.534 360.0 360.0 -74.9 80.7 13.7 -9.6 4.3 88 130 A E 0 0 188 -2,-1.8 -1,-0.2 -32,-0.1 -3,-0.0 0.403 360.0 360.0-132.5 360.0 13.1 -13.4 4.1