==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 30-DEC-08 2KCY . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S8E; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER . AUTHOR G.LIU,P.ROSSI,D.WANG,C.NWOSU,L.OWENS,R.XIAO,J.LIU,M.C.BARAN, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7921.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 17.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 26 26.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 117 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -98.0 24.8 -0.9 -29.0 2 2 A D - 0 0 109 1,-0.1 2,-1.7 2,-0.0 0, 0.0 -0.546 360.0-143.0 -67.6 116.8 22.3 -3.3 -27.3 3 3 A R - 0 0 217 -2,-0.4 2,-0.8 2,-0.0 -1,-0.1 -0.607 22.5-169.3 -85.6 75.8 18.7 -2.0 -28.1 4 4 A R - 0 0 198 -2,-1.7 2,-0.6 2,-0.0 -2,-0.0 -0.613 3.6-160.0 -75.9 102.1 17.2 -2.8 -24.7 5 5 A V + 0 0 131 -2,-0.8 2,-0.5 2,-0.1 -2,-0.0 -0.804 14.8 179.2 -87.8 118.6 13.4 -2.4 -25.1 6 6 A R - 0 0 130 -2,-0.6 2,-1.1 45,-0.1 45,-0.1 -0.785 11.9-169.5-116.3 77.8 11.6 -1.9 -21.7 7 7 A L + 0 0 149 -2,-0.5 2,-0.9 43,-0.1 -2,-0.1 -0.640 9.0 178.5 -76.6 97.4 8.0 -1.5 -23.0 8 8 A I - 0 0 89 -2,-1.1 2,-0.2 2,-0.0 -1,-0.1 -0.849 21.1-150.0 -99.0 87.6 6.0 -0.3 -19.9 9 9 A R - 0 0 213 -2,-0.9 2,-2.0 1,-0.1 -2,-0.0 -0.446 18.3-120.1 -61.5 130.1 2.5 0.0 -21.5 10 10 A T + 0 0 141 -2,-0.2 2,-0.7 2,-0.0 -1,-0.1 -0.526 41.7 177.0 -77.4 77.1 0.5 2.8 -19.8 11 11 A R + 0 0 131 -2,-2.0 2,-0.1 30,-0.1 -2,-0.0 -0.802 28.0 115.2 -87.5 112.3 -2.4 0.5 -18.6 12 12 A G + 0 0 51 -2,-0.7 2,-0.1 10,-0.0 10,-0.0 -0.347 21.8 134.4 175.7 93.0 -4.8 2.7 -16.6 13 13 A G - 0 0 49 2,-0.1 -2,-0.0 -2,-0.1 0, 0.0 -0.042 69.9 -79.7-112.9-138.6 -8.4 3.6 -17.4 14 14 A N + 0 0 171 -2,-0.1 2,-0.5 2,-0.1 0, 0.0 -0.054 66.6 155.8-121.4 28.1 -11.7 3.6 -15.3 15 15 A T - 0 0 61 1,-0.1 2,-0.6 6,-0.1 -2,-0.1 -0.438 33.8-148.4 -65.4 108.5 -12.2 -0.2 -15.6 16 16 A K + 0 0 208 -2,-0.5 2,-0.3 0, 0.0 -1,-0.1 -0.746 43.0 125.3 -82.2 118.3 -14.3 -1.3 -12.5 17 17 A V - 0 0 67 -2,-0.6 2,-0.2 5,-0.1 3,-0.1 -0.964 61.8 -91.5-166.4 155.1 -13.4 -4.9 -11.6 18 18 A R > - 0 0 225 -2,-0.3 3,-0.8 1,-0.1 4,-0.4 -0.521 69.6 -69.4 -74.2 149.0 -12.2 -7.0 -8.5 19 19 A L T 3 S+ 0 0 51 1,-0.2 4,-0.2 -2,-0.2 -1,-0.1 -0.183 111.0 79.4 -48.4 100.1 -8.4 -7.3 -8.1 20 20 A A T 3 S+ 0 0 80 -2,-0.2 3,-0.2 -3,-0.1 -1,-0.2 0.029 106.9 21.8-164.8 -56.0 -7.2 -9.6 -11.0 21 21 A S S < S+ 0 0 67 -3,-0.8 2,-0.2 1,-0.3 -2,-0.1 0.491 140.9 32.3 -97.0 -10.8 -7.1 -7.3 -14.1 22 22 A D S S- 0 0 16 -4,-0.4 2,-0.5 -10,-0.0 -1,-0.3 -0.785 82.4-147.6-148.3 94.4 -6.7 -4.3 -11.8 23 23 A T - 0 0 17 17,-0.4 17,-1.9 -2,-0.2 2,-0.3 -0.558 21.1-164.7 -67.7 114.1 -4.9 -5.0 -8.5 24 24 A R E +A 39 0A 57 -2,-0.5 59,-1.7 15,-0.2 2,-0.3 -0.816 10.3 178.8-107.0 145.0 -6.5 -2.6 -5.8 25 25 A I E -Ab 38 83A 0 13,-2.3 13,-2.2 -2,-0.3 2,-1.0 -0.997 31.2-128.3-146.2 139.4 -5.0 -1.8 -2.4 26 26 A N E -Ab 37 84A 37 57,-2.3 59,-2.4 -2,-0.3 2,-0.7 -0.814 29.8-157.7 -89.4 101.6 -6.0 0.4 0.6 27 27 A V E -Ab 36 85A 0 9,-2.7 9,-1.8 -2,-1.0 2,-0.8 -0.772 4.3-163.1 -87.3 110.2 -2.9 2.5 1.1 28 28 A V E -Ab 35 86A 55 57,-2.3 59,-1.1 -2,-0.7 7,-0.2 -0.874 14.4-142.1 -98.2 100.2 -2.9 3.9 4.7 29 29 A D > - 0 0 13 5,-2.4 4,-1.5 -2,-0.8 59,-0.1 -0.561 11.8-156.8 -61.2 112.3 -0.3 6.7 4.9 30 30 A P T 4 S+ 0 0 85 0, 0.0 -1,-0.2 0, 0.0 58,-0.1 0.678 85.8 34.8 -77.2 -17.8 1.2 6.1 8.4 31 31 A E T 4 S+ 0 0 129 56,-0.1 -2,-0.1 3,-0.1 -3,-0.0 0.849 130.9 26.8 -96.9 -48.9 2.4 9.7 9.0 32 32 A T T 4 S- 0 0 86 2,-0.1 -3,-0.0 0, 0.0 -4,-0.0 0.779 96.9-126.9 -90.9 -31.3 -0.3 11.9 7.2 33 33 A G < + 0 0 49 -4,-1.5 2,-0.7 1,-0.2 0, 0.0 0.511 47.7 160.2 95.1 6.3 -3.3 9.5 7.5 34 34 A K - 0 0 132 -6,-0.1 -5,-2.4 1,-0.0 2,-0.7 -0.521 18.7-170.7 -63.8 106.7 -4.2 9.5 3.8 35 35 A V E +A 28 0A 96 -2,-0.7 2,-0.3 -7,-0.2 -7,-0.2 -0.908 21.2 155.1-103.9 106.9 -6.3 6.3 3.2 36 36 A E E -A 27 0A 116 -9,-1.8 -9,-2.7 -2,-0.7 2,-1.0 -0.994 47.7-120.9-138.4 139.4 -6.8 5.9 -0.5 37 37 A I E +A 26 0A 85 -2,-0.3 -11,-0.2 -11,-0.2 2,-0.2 -0.731 44.4 174.1 -83.1 100.8 -7.5 2.9 -2.8 38 38 A A E -A 25 0A 1 -13,-2.2 -13,-2.3 -2,-1.0 2,-0.4 -0.487 30.8-111.3 -96.8 173.2 -4.5 2.9 -5.2 39 39 A E E -A 24 0A 35 -15,-0.2 2,-0.8 -2,-0.2 28,-0.4 -0.929 24.3-121.8-107.6 134.6 -3.6 0.3 -7.9 40 40 A I + 0 0 14 -17,-1.9 -17,-0.4 -2,-0.4 26,-0.3 -0.687 33.1 179.3 -75.6 110.3 -0.5 -1.9 -7.6 41 41 A R + 0 0 110 24,-1.5 2,-0.3 -2,-0.8 -1,-0.2 0.894 65.5 3.6 -82.0 -48.1 1.5 -0.9 -10.7 42 42 A N B -C 65 0A 56 23,-0.7 23,-2.9 2,-0.1 -1,-0.3 -0.959 53.5-145.2-136.0 153.8 4.5 -3.2 -10.2 43 43 A V > + 0 0 19 -2,-0.3 2,-1.5 21,-0.2 3,-0.5 -0.319 42.0 159.7-110.2 42.3 5.4 -5.8 -7.5 44 44 A V T 3 + 0 0 32 1,-0.2 4,-0.1 2,-0.1 -2,-0.1 -0.564 22.0 122.8 -70.8 87.7 9.1 -4.7 -7.8 45 45 A E T 3 S- 0 0 111 -2,-1.5 -1,-0.2 17,-0.0 3,-0.1 0.629 102.9 -17.4-106.4 -50.4 10.5 -6.0 -4.5 46 46 A N S < S+ 0 0 136 -3,-0.5 2,-1.8 17,-0.1 -2,-0.1 0.530 120.7 88.4-129.2 -30.0 13.2 -8.2 -6.0 47 47 A T - 0 0 17 -4,-0.5 2,-0.3 8,-0.1 -4,-0.1 -0.547 66.6-174.9 -75.3 80.7 12.0 -8.5 -9.7 48 48 A A + 0 0 54 -2,-1.8 -3,-0.0 -4,-0.1 -2,-0.0 -0.665 48.6 14.7 -86.0 137.8 13.8 -5.3 -10.8 49 49 A N S S- 0 0 107 -2,-0.3 2,-0.6 1,-0.1 4,-0.1 0.762 98.1 -84.6 66.5 119.8 13.3 -3.9 -14.4 50 50 A P + 0 0 47 0, 0.0 2,-0.3 0, 0.0 -43,-0.1 -0.398 56.9 165.5 -50.3 100.0 10.3 -5.3 -16.6 51 51 A H S S- 0 0 116 -2,-0.6 3,-0.1 -45,-0.1 -45,-0.1 -0.693 80.0 -57.4-121.0 73.1 11.8 -8.6 -18.1 52 52 A F S S+ 0 0 218 -2,-0.3 2,-0.4 1,-0.2 0, 0.0 0.706 102.0 145.4 61.5 23.9 8.6 -10.4 -19.3 53 53 A V + 0 0 53 1,-0.1 -1,-0.2 -4,-0.1 -4,-0.0 -0.739 25.8 152.5-100.1 137.1 7.3 -10.2 -15.7 54 54 A R + 0 0 230 -2,-0.4 2,-0.2 -3,-0.1 -1,-0.1 -0.061 26.2 167.1-143.2 28.3 3.7 -9.7 -14.6 55 55 A R + 0 0 131 1,-0.1 -12,-0.2 2,-0.1 -8,-0.1 -0.301 16.9 176.8 -59.1 112.0 4.1 -11.5 -11.2 56 56 A N + 0 0 79 -2,-0.2 2,-1.5 2,-0.1 -1,-0.1 -0.126 36.0 130.7-107.5 31.3 1.1 -10.7 -8.9 57 57 A I + 0 0 128 -14,-0.1 2,-0.6 2,-0.0 -2,-0.1 -0.719 37.2 176.2 -82.0 84.8 2.4 -13.0 -6.2 58 58 A I + 0 0 9 -2,-1.5 2,-0.2 4,-0.0 -2,-0.1 -0.898 2.5 178.0-103.0 116.0 1.9 -10.4 -3.5 59 59 A T > - 0 0 83 -2,-0.6 3,-1.5 17,-0.1 14,-0.3 -0.752 37.8 -84.1-117.5 162.9 2.7 -11.4 0.1 60 60 A R T 3 S+ 0 0 166 -2,-0.2 14,-0.2 1,-0.2 3,-0.1 -0.470 116.1 25.8 -67.0 135.7 2.6 -9.7 3.6 61 61 A G T 3 S+ 0 0 44 12,-2.5 -1,-0.2 1,-0.3 2,-0.2 0.353 94.4 131.0 88.1 -2.9 5.9 -7.8 4.3 62 62 A A < - 0 0 11 -3,-1.5 11,-1.7 11,-0.2 2,-0.7 -0.549 60.3-126.0 -82.0 145.8 6.5 -7.3 0.5 63 63 A V E + D 0 72A 6 -2,-0.2 2,-0.3 9,-0.2 9,-0.2 -0.859 36.1 177.5 -90.1 112.2 7.3 -3.9 -1.0 64 64 A V E - D 0 71A 0 7,-2.3 7,-2.3 -2,-0.7 2,-0.4 -0.753 26.7-123.4-107.4 159.6 4.8 -3.2 -3.9 65 65 A E E +CD 42 70A 28 -23,-2.9 -24,-1.5 -2,-0.3 -23,-0.7 -0.899 36.6 167.1-102.6 137.5 4.5 -0.1 -6.1 66 66 A T E > - D 0 69A 8 3,-1.6 3,-1.0 -2,-0.4 -26,-0.2 -0.690 54.5 -82.6-133.5-175.5 1.2 1.9 -6.2 67 67 A N T 3 S+ 0 0 75 -28,-0.4 3,-0.1 1,-0.2 -27,-0.1 0.743 132.5 44.8 -60.6 -27.0 -0.3 5.2 -7.4 68 68 A L T 3 S- 0 0 76 1,-0.4 2,-0.3 -29,-0.1 -1,-0.2 0.401 124.5-101.2-100.2 -0.7 1.0 6.8 -4.1 69 69 A G E < S-D 66 0A 27 -3,-1.0 -3,-1.6 18,-0.0 -1,-0.4 -0.751 72.6 -5.3 112.1-161.7 4.5 5.0 -4.3 70 70 A N E -D 65 0A 8 18,-0.3 18,-2.7 -2,-0.3 2,-0.3 -0.466 64.9-172.6 -73.7 138.1 5.9 1.9 -2.6 71 71 A V E -DE 64 87A 0 -7,-2.3 -7,-2.3 16,-0.3 2,-0.5 -0.947 25.2-124.7-130.4 146.6 3.7 0.3 0.2 72 72 A R E -DE 63 86A 82 14,-2.6 14,-1.7 -2,-0.3 2,-0.7 -0.852 29.6-127.6 -85.2 126.7 4.2 -2.6 2.8 73 73 A V E + E 0 85A 2 -11,-1.7 -12,-2.5 -2,-0.5 12,-0.3 -0.692 33.8 173.8 -73.5 111.7 1.5 -5.2 2.3 74 74 A T + 0 0 61 10,-1.4 11,-0.2 -2,-0.7 -1,-0.2 0.672 63.4 41.1 -95.4 -21.9 0.1 -5.5 5.9 75 75 A S S S- 0 0 11 9,-1.7 -14,-0.1 -16,-0.1 8,-0.1 -0.277 90.4 -99.5-107.2-171.3 -2.8 -7.9 4.9 76 76 A R > - 0 0 117 6,-0.1 3,-2.0 -2,-0.1 2,-0.7 -0.965 41.6-104.9-111.3 136.7 -3.1 -10.9 2.7 77 77 A P T 3 S+ 0 0 59 0, 0.0 5,-0.2 0, 0.0 6,-0.1 -0.517 113.0 35.4 -59.8 103.8 -4.7 -10.5 -0.9 78 78 A G T 3 S+ 0 0 55 3,-0.7 4,-0.2 -2,-0.7 5,-0.1 0.291 86.2 100.2 130.2 -6.1 -8.2 -12.0 -0.3 79 79 A Q S < S+ 0 0 103 -3,-2.0 4,-0.1 2,-0.2 3,-0.1 0.995 109.3 8.8 -67.3 -71.8 -8.9 -10.9 3.4 80 80 A D S S- 0 0 119 2,-0.8 2,-2.1 -4,-0.3 -1,-0.2 0.021 113.4-109.2 -89.3 30.8 -11.2 -7.9 2.6 81 81 A G S S+ 0 0 36 -5,-0.1 -3,-0.7 1,-0.1 -2,-0.2 -0.629 105.2 70.9 64.6 -74.7 -11.1 -9.2 -1.0 82 82 A V S S- 0 0 34 -2,-2.1 -2,-0.8 -4,-0.2 -4,-0.4 -0.130 93.2-110.4 -57.9 156.2 -8.9 -6.1 -1.7 83 83 A I E -b 25 0A 0 -59,-1.7 -57,-2.3 -6,-0.1 2,-0.3 -0.536 31.5-165.9 -84.0 151.5 -5.3 -5.7 -0.4 84 84 A N E +b 26 0A 40 -59,-0.3 -9,-1.7 -2,-0.2 -10,-1.4 -0.979 18.2 139.8-138.0 158.0 -4.4 -3.2 2.4 85 85 A G E -bE 27 73A 1 -59,-2.4 -57,-2.3 -2,-0.3 2,-0.4 -0.910 45.1 -84.8-168.7-171.7 -1.1 -1.8 3.6 86 86 A V E -bE 28 72A 46 -14,-1.7 -14,-2.6 -2,-0.3 -57,-0.2 -0.975 41.3-112.2-122.9 135.2 1.0 1.2 4.8 87 87 A L E - E 0 71A 32 -59,-1.1 -16,-0.3 -2,-0.4 2,-0.2 -0.436 41.8-175.8 -68.4 134.1 2.8 3.8 2.5 88 88 A I - 0 0 36 -18,-2.7 -18,-0.3 -2,-0.1 3,-0.2 -0.824 33.5-130.2-132.0 167.2 6.6 3.6 2.8 89 89 A R + 0 0 174 -2,-0.2 -18,-0.1 1,-0.1 -2,-0.0 -0.398 59.9 126.3-117.7 49.4 9.8 5.4 1.5 90 90 A E S S+ 0 0 95 -20,-0.1 2,-0.2 -2,-0.1 -1,-0.1 0.974 73.5 32.5 -68.2 -58.7 11.9 2.4 0.2 91 91 A L S S+ 0 0 70 -3,-0.2 -21,-0.2 1,-0.2 5,-0.0 -0.500 103.9 37.3 -96.8 166.8 12.4 3.7 -3.3 92 92 A E + 0 0 36 -2,-0.2 -1,-0.2 5,-0.1 4,-0.1 0.975 59.4 140.1 56.9 73.0 12.8 7.2 -4.8 93 93 A H S S+ 0 0 133 2,-0.1 -2,-0.1 -3,-0.1 3,-0.1 0.816 85.2 4.6 -97.0 -70.0 14.8 9.2 -2.2 94 94 A H S S+ 0 0 186 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.962 136.9 43.1 -81.5 -64.2 17.2 11.4 -4.3 95 95 A H - 0 0 113 1,-0.1 -2,-0.1 2,-0.1 -1,-0.1 -0.629 60.8-170.4 -79.4 140.1 15.9 10.5 -7.8 96 96 A H + 0 0 146 -2,-0.3 2,-0.3 -4,-0.1 -1,-0.1 -0.151 64.7 83.8-119.4 35.3 12.1 10.3 -8.2 97 97 A H 0 0 155 1,-0.1 -5,-0.1 0, 0.0 -2,-0.1 -0.993 360.0 360.0-139.1 140.3 12.4 8.8 -11.7 98 98 A H 0 0 116 -2,-0.3 -1,-0.1 -6,-0.0 -2,-0.0 0.205 360.0 360.0-166.2 360.0 12.9 5.1 -12.7