==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIFREEZE PROTEIN 08-JUL-96 1KDE . COMPND 2 MOLECULE: ANTIFREEZE PROTEIN TYPE III ISOFORM HPLC12 . SOURCE 2 ORGANISM_SCIENTIFIC: MACROZOARCES AMERICANUS; . AUTHOR F.D.SONNICHSEN,C.I.DELUCA,P.L.DAVIES,B.D.SYKES . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4020.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 34 52.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 23.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 194 0, 0.0 2,-0.4 0, 0.0 25,-0.0 0.000 360.0 360.0 360.0 142.8 -14.7 -11.0 -4.7 2 2 A Q - 0 0 116 31,-0.0 2,-0.3 1,-0.0 25,-0.3 -0.566 360.0-149.4 -74.6 126.8 -11.6 -9.3 -6.2 3 3 A A - 0 0 31 -2,-0.4 31,-0.7 23,-0.1 2,-0.2 -0.669 15.3-174.1 -97.3 152.6 -9.2 -8.3 -3.5 4 4 A S E -AB 25 33A 1 21,-1.6 21,-1.9 -2,-0.3 2,-0.3 -0.761 29.7 -84.7-134.2-179.8 -6.8 -5.3 -3.7 5 5 A V E -A 24 0A 1 27,-1.6 50,-1.2 50,-0.4 2,-0.3 -0.648 41.1-176.9 -91.5 147.7 -4.0 -3.6 -1.7 6 6 A V E -AC 23 54A 9 17,-1.0 17,-0.5 -2,-0.3 48,-0.2 -0.996 29.5-103.3-144.7 148.0 -4.7 -1.2 1.1 7 7 A A E -A 22 0A 7 46,-0.6 45,-1.0 -2,-0.3 15,-0.2 -0.342 21.6-168.3 -68.5 149.8 -2.5 1.0 3.4 8 8 A N + 0 0 70 13,-1.2 2,-0.3 1,-0.2 13,-0.1 0.621 68.4 6.6-111.5 -23.1 -2.0 -0.2 7.0 9 9 A Q S S- 0 0 85 12,-0.3 2,-1.2 40,-0.1 -1,-0.2 -0.887 100.5 -58.6-149.3 178.4 -0.5 2.9 8.5 10 10 A L - 0 0 118 -2,-0.3 11,-0.0 40,-0.1 38,-0.0 -0.501 54.2-167.3 -68.5 97.1 0.4 6.6 7.7 11 11 A I B -D 49 0B 3 38,-1.5 38,-1.5 -2,-1.2 2,-0.2 -0.780 11.3-141.5 -89.8 118.5 2.6 6.2 4.7 12 12 A P > - 0 0 70 0, 0.0 3,-0.6 0, 0.0 33,-0.2 -0.515 24.4-100.1 -81.4 147.7 4.5 9.5 3.9 13 13 A I T 3 S+ 0 0 73 1,-0.2 35,-0.1 -2,-0.2 33,-0.1 -0.195 106.3 28.3 -61.1 154.9 5.1 10.7 0.3 14 14 A N T 3 S+ 0 0 111 31,-0.9 2,-0.3 1,-0.2 -1,-0.2 0.851 100.0 122.9 60.8 34.3 8.5 10.1 -1.2 15 15 A T < - 0 0 47 -3,-0.6 30,-0.8 30,-0.1 2,-0.3 -0.912 66.2-108.8-127.2 154.6 8.9 7.1 1.1 16 16 A A B -E 44 0C 45 -2,-0.3 28,-0.2 28,-0.2 2,-0.1 -0.598 33.4-128.1 -83.1 140.8 9.6 3.4 0.5 17 17 A L - 0 0 2 26,-1.0 25,-1.4 -2,-0.3 2,-0.2 -0.342 26.0-170.7 -82.5 167.1 6.8 0.9 1.1 18 18 A T > - 0 0 55 23,-0.2 4,-1.1 24,-0.1 -1,-0.0 -0.790 40.5 -92.0-143.9-174.0 7.0 -2.2 3.2 19 19 A L T 4 S+ 0 0 101 -2,-0.2 -1,-0.0 2,-0.2 -2,-0.0 0.820 123.5 49.8 -75.6 -31.9 5.1 -5.4 4.1 20 20 A V T 4 S+ 0 0 92 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.916 109.9 49.1 -72.4 -44.3 3.5 -3.7 7.1 21 21 A M T 4 S+ 0 0 11 -13,-0.1 -13,-1.2 -14,-0.1 -12,-0.3 0.808 110.5 62.8 -65.0 -29.1 2.3 -0.7 5.1 22 22 A M E < +A 7 0A 8 -4,-1.1 2,-0.3 -15,-0.2 -15,-0.1 -0.724 65.4 151.0 -99.5 149.1 0.9 -3.1 2.5 23 23 A R E -A 6 0A 102 -17,-0.5 -17,-1.0 -2,-0.3 2,-0.4 -0.937 41.6 -94.4-160.1 179.4 -1.9 -5.6 3.2 24 24 A S E +A 5 0A 72 -2,-0.3 2,-0.2 -19,-0.2 -19,-0.2 -0.905 51.7 131.7-111.8 135.8 -4.8 -7.5 1.6 25 25 A E E -A 4 0A 85 -21,-1.9 -21,-1.6 -2,-0.4 2,-0.5 -0.860 54.1-106.1-178.0 141.9 -8.4 -6.4 1.7 26 26 A V + 0 0 63 -2,-0.2 2,-0.3 -23,-0.2 -23,-0.1 -0.647 53.0 151.8 -79.7 121.9 -11.4 -5.9 -0.6 27 27 A V - 0 0 32 -2,-0.5 4,-0.1 -25,-0.3 -2,-0.1 -0.931 37.4 -78.7-144.6 167.3 -12.0 -2.2 -1.4 28 28 A T S S+ 0 0 127 -2,-0.3 26,-0.2 1,-0.2 2,-0.1 -0.972 106.2 32.9-125.7 139.0 -13.4 0.0 -4.1 29 29 A P S S- 0 0 83 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 0.407 91.6-134.4 -79.6 137.2 -12.3 1.0 -6.6 30 30 A V + 0 0 84 1,-0.1 -2,-0.1 -2,-0.1 -27,-0.1 -0.390 41.6 158.8 -59.3 106.3 -10.4 -2.3 -7.0 31 31 A G + 0 0 27 -2,-0.6 25,-0.2 1,-0.4 -1,-0.1 0.590 53.4 10.0 -96.1-112.6 -6.9 -1.1 -8.1 32 32 A I S S- 0 0 3 23,-1.9 -27,-1.6 -27,-0.1 -1,-0.4 -0.471 81.3-124.8 -70.9 139.5 -3.8 -3.3 -7.7 33 33 A P B > -B 4 0A 34 0, 0.0 3,-0.7 0, 0.0 -29,-0.3 -0.240 20.0-108.5 -80.4 172.7 -4.6 -7.0 -6.7 34 34 A A G > S+ 0 0 28 -31,-0.7 3,-0.7 1,-0.2 -30,-0.1 0.456 107.1 81.1 -79.5 -0.1 -3.2 -8.9 -3.7 35 35 A E G 3 S+ 0 0 137 1,-0.2 -1,-0.2 -32,-0.2 -31,-0.0 0.163 88.8 54.2 -91.0 19.8 -1.1 -11.0 -6.0 36 36 A D G <> + 0 0 24 -3,-0.7 4,-1.1 2,-0.1 -1,-0.2 0.005 67.3 113.4-140.1 29.9 1.5 -8.2 -6.2 37 37 A I T <4 S+ 0 0 38 -3,-0.7 3,-0.4 1,-0.2 -2,-0.1 0.934 82.6 43.5 -70.3 -46.8 2.4 -7.6 -2.6 38 38 A P T 4 S+ 0 0 101 0, 0.0 3,-0.3 0, 0.0 -1,-0.2 0.549 113.3 55.3 -76.7 -4.2 6.0 -8.9 -2.7 39 39 A R T 4 S+ 0 0 185 1,-0.2 -2,-0.2 -3,-0.1 -3,-0.0 0.712 100.8 55.9 -96.9 -25.8 6.5 -7.0 -6.0 40 40 A L S >< S+ 0 0 0 -4,-1.1 3,-0.7 -3,-0.4 2,-0.3 -0.097 80.5 132.0 -97.5 35.3 5.5 -3.6 -4.7 41 41 A V T 3 S+ 0 0 43 -3,-0.3 -23,-0.2 1,-0.2 3,-0.1 -0.671 71.7 9.1 -90.0 142.4 8.1 -3.6 -2.0 42 42 A S T 3 S+ 0 0 81 -25,-1.4 2,-0.4 -2,-0.3 -1,-0.2 0.837 92.4 156.6 60.7 32.6 10.4 -0.6 -1.4 43 43 A M < - 0 0 34 -3,-0.7 -26,-1.0 -25,-0.0 2,-0.6 -0.751 37.6-140.6 -94.4 136.7 8.2 1.3 -3.9 44 44 A Q B -E 16 0C 109 -2,-0.4 17,-0.9 17,-0.4 -28,-0.2 -0.854 16.3-149.3-100.2 119.1 8.2 5.1 -3.7 45 45 A V B -F 60 0D 3 -30,-0.8 -31,-0.9 -2,-0.6 15,-0.2 -0.318 14.4-133.0 -79.9 166.6 4.8 6.7 -4.3 46 46 A N S S+ 0 0 61 13,-1.2 2,-0.3 -33,-0.1 -1,-0.1 -0.077 84.2 28.9-110.3 32.1 4.2 10.1 -5.9 47 47 A R S S- 0 0 130 -35,-0.1 2,-0.2 12,-0.0 -33,-0.1 -0.945 97.4 -70.9-178.4 159.6 1.8 11.3 -3.3 48 48 A A - 0 0 72 -2,-0.3 -2,-0.1 -35,-0.1 -38,-0.0 -0.427 41.7-166.7 -65.2 130.2 0.7 11.0 0.3 49 49 A V B -D 11 0B 2 -38,-1.5 -38,-1.5 -2,-0.2 -40,-0.1 -0.850 10.0-177.1-123.2 95.2 -0.9 7.7 1.0 50 50 A P - 0 0 62 0, 0.0 -43,-0.3 0, 0.0 -41,-0.1 -0.074 43.4 -55.2 -80.0-175.0 -2.8 7.5 4.4 51 51 A L S S+ 0 0 108 1,-0.2 -43,-0.1 -43,-0.1 -41,-0.1 -0.269 119.2 26.4 -61.7 146.9 -4.5 4.6 6.1 52 52 A G S S+ 0 0 59 -45,-1.0 2,-0.4 1,-0.2 -1,-0.2 0.999 81.9 145.2 62.0 71.7 -7.2 2.9 4.0 53 53 A T - 0 0 34 -4,-0.1 2,-0.7 -46,-0.1 -46,-0.6 -0.916 52.0-126.4-145.0 114.4 -6.1 3.7 0.5 54 54 A T B -C 6 0A 23 -2,-0.4 2,-0.4 -48,-0.2 -48,-0.2 -0.427 31.7-130.4 -61.8 104.1 -6.4 1.4 -2.5 55 55 A L - 0 0 3 -50,-1.2 -23,-1.9 -2,-0.7 -50,-0.4 -0.416 29.4-163.3 -61.0 113.2 -2.9 1.1 -3.8 56 56 A M > - 0 0 60 -2,-0.4 4,-1.0 -25,-0.2 7,-0.1 -0.566 24.9-129.3 -96.9 163.1 -3.1 1.8 -7.5 57 57 A P T 4 S+ 0 0 47 0, 0.0 6,-0.2 0, 0.0 5,-0.1 0.765 107.3 54.7 -81.7 -26.3 -0.5 1.1 -10.2 58 58 A D T 4 S+ 0 0 101 1,-0.2 4,-0.1 3,-0.1 -3,-0.0 0.831 106.7 51.2 -75.1 -32.8 -0.6 4.6 -11.7 59 59 A M T 4 S+ 0 0 12 1,-0.1 -13,-1.2 2,-0.1 2,-0.8 0.866 96.4 77.2 -71.7 -36.8 0.2 6.1 -8.3 60 60 A V B >< S-F 45 0D 2 -4,-1.0 3,-1.2 -15,-0.2 2,-0.4 -0.662 85.6-135.5 -80.0 108.4 3.2 3.9 -7.7 61 61 A K T 3 S+ 0 0 150 -17,-0.9 -17,-0.4 -2,-0.8 3,-0.1 -0.491 90.3 17.6 -66.9 119.2 6.0 5.2 -9.8 62 62 A G T 3 S+ 0 0 77 -2,-0.4 2,-1.0 1,-0.2 -1,-0.2 -0.077 95.2 111.2 110.5 -31.9 7.7 2.3 -11.6 63 63 A Y < + 0 0 43 -3,-1.2 -1,-0.2 -6,-0.2 2,-0.2 -0.659 45.6 166.5 -80.6 103.2 4.8 -0.1 -11.1 64 64 A A 0 0 80 -2,-1.0 -6,-0.0 -3,-0.1 -3,-0.0 -0.607 360.0 360.0-111.6 173.7 3.4 -0.7 -14.6 65 65 A A 0 0 149 -2,-0.2 -2,-0.0 -8,-0.0 0, 0.0 -0.749 360.0 360.0 -85.2 360.0 1.0 -3.2 -16.0