==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIFREEZE PROTEIN 08-JUL-96 1KDF . COMPND 2 MOLECULE: ANTIFREEZE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MACROZOARCES AMERICANUS; . AUTHOR F.D.SONNICHSEN,C.I.DELUCA,P.L.DAVIES,B.D.SYKES . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3988.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 55.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 21.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 200 0, 0.0 2,-0.5 0, 0.0 25,-0.0 0.000 360.0 360.0 360.0 119.8 -14.6 -10.2 -5.1 2 2 A Q - 0 0 108 25,-0.1 25,-0.4 31,-0.0 2,-0.3 -0.815 360.0-138.6 -97.1 127.4 -11.1 -9.2 -5.9 3 3 A A - 0 0 32 -2,-0.5 31,-1.0 23,-0.1 23,-0.2 -0.621 19.2-160.6 -85.2 141.3 -8.9 -7.9 -3.0 4 4 A S E -AB 25 33A 0 21,-1.9 21,-1.7 -2,-0.3 2,-1.0 -0.495 31.2 -88.8-110.9-177.9 -6.6 -5.0 -3.5 5 5 A V E -A 24 0A 1 27,-1.5 50,-1.5 50,-0.4 2,-0.2 -0.776 48.4-174.6 -97.9 95.1 -3.5 -3.6 -1.8 6 6 A V E -AC 23 54A 2 17,-1.4 17,-1.1 -2,-1.0 2,-0.3 -0.616 34.7 -97.9 -90.0 149.4 -4.8 -1.2 0.9 7 7 A A - 0 0 2 46,-1.1 45,-1.9 43,-0.3 15,-0.2 -0.492 31.7-171.7 -67.7 122.2 -2.5 0.9 3.0 8 8 A N + 0 0 60 -2,-0.3 2,-0.3 13,-0.2 -1,-0.2 0.589 69.6 17.3 -90.2 -12.5 -1.9 -0.8 6.4 9 9 A Q S S- 0 0 95 12,-0.3 2,-1.2 40,-0.1 12,-0.0 -0.917 101.7 -67.1-149.4 174.1 -0.1 2.2 7.9 10 10 A L - 0 0 115 -2,-0.3 11,-0.0 40,-0.1 -2,-0.0 -0.535 50.6-168.4 -70.9 98.3 0.5 5.9 7.5 11 11 A I B -D 49 0B 2 38,-1.4 38,-1.4 -2,-1.2 6,-0.1 -0.801 7.8-155.6 -92.2 110.9 2.6 6.0 4.2 12 12 A P > - 0 0 61 0, 0.0 3,-0.6 0, 0.0 33,-0.3 -0.296 25.3 -88.9 -81.5 169.4 4.1 9.5 3.7 13 13 A I T 3 S+ 0 0 80 1,-0.2 35,-0.1 35,-0.1 33,-0.1 -0.385 108.6 24.8 -75.7 155.3 5.1 11.0 0.4 14 14 A N T 3 S+ 0 0 126 31,-0.8 2,-0.3 1,-0.2 -1,-0.2 0.842 102.7 116.5 60.0 33.5 8.6 10.5 -1.0 15 15 A T < - 0 0 52 -3,-0.6 30,-1.3 30,-0.2 -1,-0.2 -0.939 66.1-115.3-132.5 154.7 8.9 7.3 1.0 16 16 A A B -E 44 0C 37 -2,-0.3 28,-0.2 28,-0.2 2,-0.1 -0.597 30.7-120.1 -88.8 150.1 9.2 3.6 0.1 17 17 A L - 0 0 0 26,-0.9 25,-1.2 -2,-0.2 2,-0.3 -0.345 28.6-168.0 -83.2 167.6 6.5 1.1 0.9 18 18 A T > - 0 0 50 23,-0.2 3,-0.6 24,-0.1 22,-0.0 -0.945 39.3-100.9-149.8 168.8 6.9 -2.0 3.1 19 19 A L G > S+ 0 0 117 -2,-0.3 3,-1.2 1,-0.3 -1,-0.1 0.840 122.8 55.7 -62.0 -32.6 5.2 -5.2 4.1 20 20 A V G 3 S+ 0 0 88 1,-0.3 -1,-0.3 3,-0.0 -3,-0.0 0.796 106.0 51.2 -70.1 -28.4 4.0 -3.5 7.3 21 21 A M G < S+ 0 0 17 -3,-0.6 2,-0.3 -13,-0.1 -12,-0.3 -0.032 106.6 68.9 -98.5 30.8 2.4 -0.8 5.2 22 22 A M < + 0 0 13 -3,-1.2 2,-0.3 -15,-0.2 -15,-0.2 -0.997 52.3 159.0-149.5 144.1 0.5 -3.3 3.0 23 23 A R E -A 6 0A 79 -17,-1.1 -17,-1.4 -2,-0.3 2,-0.7 -0.987 41.6-103.5-159.7 159.9 -2.3 -5.7 3.5 24 24 A S E +A 5 0A 72 -2,-0.3 2,-0.3 -19,-0.2 -19,-0.2 -0.808 55.3 143.4 -94.6 112.3 -4.9 -7.7 1.6 25 25 A E E -A 4 0A 79 -21,-1.7 -21,-1.9 -2,-0.7 2,-0.4 -0.995 50.8-106.4-148.1 150.4 -8.4 -6.1 2.0 26 26 A V + 0 0 91 -2,-0.3 2,-0.3 -23,-0.2 -23,-0.1 -0.616 53.4 143.6 -79.9 131.4 -11.5 -5.5 -0.2 27 27 A V - 0 0 35 -25,-0.4 4,-0.1 -2,-0.4 -25,-0.1 -0.937 38.1 -69.0-155.5 175.2 -12.0 -2.0 -1.4 28 28 A T S S+ 0 0 121 -2,-0.3 26,-0.2 2,-0.1 2,-0.1 -0.982 95.0 31.1-133.7 145.0 -13.2 0.2 -4.3 29 29 A P S S- 0 0 73 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 0.578 91.9-109.9 -80.9 168.4 -12.3 0.9 -7.0 30 30 A V + 0 0 98 -2,-0.1 -2,-0.1 1,-0.1 -27,-0.1 -0.449 58.6 153.0 -63.4 103.4 -10.6 -2.3 -8.1 31 31 A G - 0 0 19 -2,-0.8 25,-0.2 1,-0.3 -1,-0.1 0.285 51.9 -9.0-103.1-130.2 -6.9 -1.2 -8.2 32 32 A I S S- 0 0 3 23,-1.9 -27,-1.5 -27,-0.2 -1,-0.3 -0.483 74.4-126.3 -71.8 139.2 -3.8 -3.3 -7.7 33 33 A P B > -B 4 0A 28 0, 0.0 3,-0.6 0, 0.0 -29,-0.2 -0.221 18.1-111.2 -80.5 174.6 -4.4 -6.9 -6.5 34 34 A A T 3 S+ 0 0 25 -31,-1.0 3,-0.4 1,-0.2 -30,-0.1 0.177 102.7 82.5 -90.7 17.8 -2.9 -8.6 -3.5 35 35 A E T 3 S+ 0 0 157 1,-0.2 -1,-0.2 2,-0.1 4,-0.1 0.751 89.4 48.5 -90.4 -27.7 -0.9 -10.9 -5.7 36 36 A D S <> S+ 0 0 26 -3,-0.6 4,-1.6 1,-0.2 -1,-0.2 -0.020 72.9 121.8-101.4 30.0 2.0 -8.5 -6.3 37 37 A I T 4 S+ 0 0 40 -3,-0.4 3,-0.3 1,-0.2 -1,-0.2 0.928 80.2 40.4 -58.3 -47.3 2.4 -7.6 -2.6 38 38 A P T >4 S+ 0 0 93 0, 0.0 3,-0.7 0, 0.0 -1,-0.2 0.714 111.8 58.4 -75.4 -18.2 6.1 -8.7 -2.6 39 39 A R T 34 S+ 0 0 191 1,-0.2 -2,-0.2 -4,-0.1 -3,-0.1 0.762 101.6 54.5 -80.0 -25.8 6.7 -7.1 -6.0 40 40 A L T >< S+ 0 0 0 -4,-1.6 3,-0.7 -3,-0.3 2,-0.4 -0.098 81.1 134.7 -98.3 35.0 5.6 -3.7 -4.7 41 41 A V T < S+ 0 0 46 -3,-0.7 -23,-0.2 1,-0.2 3,-0.1 -0.686 73.1 5.0 -88.2 136.3 8.1 -3.8 -1.9 42 42 A S T 3 S+ 0 0 80 -25,-1.2 2,-0.5 -2,-0.4 -1,-0.2 0.885 90.6 159.1 60.9 39.5 10.2 -0.6 -1.2 43 43 A M < - 0 0 35 -3,-0.7 -26,-0.9 19,-0.0 2,-0.3 -0.839 37.5-133.6 -99.6 126.7 8.2 1.2 -3.9 44 44 A Q B -E 16 0C 121 -2,-0.5 17,-0.9 17,-0.3 2,-0.2 -0.602 19.4-142.4 -80.0 133.7 8.2 5.0 -3.8 45 45 A V B -F 60 0D 5 -30,-1.3 -31,-0.8 -2,-0.3 -30,-0.2 -0.590 11.6-135.2 -94.4 157.4 4.8 6.7 -4.2 46 46 A N S S+ 0 0 65 13,-1.3 2,-0.2 -2,-0.2 -1,-0.1 0.803 87.7 13.8 -79.7 -30.5 4.1 9.9 -6.1 47 47 A R S S- 0 0 136 12,-0.1 2,-0.5 -34,-0.1 -33,-0.1 -0.751 97.1 -72.9-134.3-178.4 1.9 11.3 -3.3 48 48 A A - 0 0 52 -2,-0.2 -35,-0.1 -35,-0.1 -2,-0.0 -0.684 41.3-167.6 -83.9 125.9 0.9 10.7 0.3 49 49 A V B -D 11 0B 2 -38,-1.4 -38,-1.4 -2,-0.5 -40,-0.1 -0.929 6.8-163.6-117.1 109.2 -1.2 7.6 0.8 50 50 A P - 0 0 63 0, 0.0 -43,-0.3 0, 0.0 3,-0.2 -0.108 39.1 -62.0 -80.4-176.9 -2.9 7.2 4.3 51 51 A L S S+ 0 0 85 1,-0.2 -43,-0.2 -43,-0.1 -41,-0.1 -0.294 117.7 29.2 -65.4 150.3 -4.5 4.1 5.9 52 52 A G S S+ 0 0 53 -45,-1.9 2,-0.4 1,-0.2 -1,-0.2 0.976 88.0 133.6 63.7 57.0 -7.5 2.6 4.2 53 53 A T - 0 0 38 -3,-0.2 -46,-1.1 -46,-0.1 -1,-0.2 -0.971 59.4-118.2-142.9 124.2 -6.6 3.7 0.7 54 54 A T B -C 6 0A 20 -2,-0.4 2,-0.8 -26,-0.2 -48,-0.2 -0.393 29.2-132.6 -61.6 126.0 -6.6 1.6 -2.5 55 55 A L - 0 0 4 -50,-1.5 -23,-1.9 -23,-0.2 -50,-0.4 -0.731 25.4-165.4 -86.2 112.8 -3.1 1.4 -3.9 56 56 A M > - 0 0 54 -2,-0.8 4,-0.9 -25,-0.2 -25,-0.1 -0.589 24.1-133.2 -95.1 158.9 -3.2 2.1 -7.7 57 57 A P T 4 S+ 0 0 40 0, 0.0 6,-0.2 0, 0.0 5,-0.1 0.763 103.4 61.7 -81.2 -26.0 -0.3 1.4 -10.2 58 58 A D T 4 S+ 0 0 114 1,-0.2 4,-0.1 3,-0.1 -3,-0.0 0.841 106.4 46.1 -68.1 -33.0 -0.5 4.8 -11.8 59 59 A M T 4 S+ 0 0 23 1,-0.1 -13,-1.3 2,-0.1 2,-0.9 0.831 97.9 80.0 -77.6 -33.5 0.4 6.4 -8.5 60 60 A V B >< S-F 45 0D 2 -4,-0.9 3,-1.2 -15,-0.2 2,-0.4 -0.658 82.8-138.8 -79.9 105.7 3.2 3.9 -7.9 61 61 A K T 3 S+ 0 0 154 -17,-0.9 -17,-0.3 -2,-0.9 3,-0.1 -0.496 87.9 19.1 -67.9 121.3 6.2 5.2 -9.9 62 62 A G T 3 S+ 0 0 80 -2,-0.4 2,-0.5 1,-0.3 -1,-0.2 -0.076 101.2 102.5 110.1 -31.9 7.9 2.2 -11.5 63 63 A Y < + 0 0 31 -3,-1.2 2,-0.4 -6,-0.2 -1,-0.3 -0.755 45.0 173.0 -89.9 124.4 4.9 -0.2 -11.1 64 64 A A 0 0 84 -2,-0.5 -6,-0.1 -3,-0.1 -3,-0.0 -0.973 360.0 360.0-136.5 121.0 2.9 -0.8 -14.3 65 65 A A 0 0 113 -2,-0.4 -2,-0.0 0, 0.0 -1,-0.0 0.624 360.0 360.0 60.6 360.0 0.1 -3.3 -14.7