==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 13-NOV-01 1KDL . COMPND 2 MOLECULE: YOPD PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.TENGEL,I.SETHSON,M.S.FRANCIS . 23 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2896.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 73.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 278 A D > 0 0 209 0, 0.0 3,-0.6 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0 -60.5 -17.5 -3.5 -9.3 2 279 A N T 3> + 0 0 123 1,-0.2 4,-0.7 2,-0.1 0, 0.0 0.033 360.0 109.4 -93.0 30.1 -15.6 -2.9 -6.0 3 280 A F H 3> S+ 0 0 147 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.789 74.3 54.5 -77.1 -23.1 -13.6 -6.1 -6.4 4 281 A M H <>>S+ 0 0 116 -3,-0.6 4,-4.2 2,-0.2 5,-0.6 0.869 91.9 70.4 -78.1 -33.0 -10.4 -4.2 -7.2 5 282 A K H >5S+ 0 0 150 1,-0.3 4,-1.2 2,-0.2 -1,-0.2 0.913 102.2 47.8 -49.5 -37.4 -10.6 -2.1 -4.0 6 283 A D H X5S+ 0 0 81 -4,-0.7 4,-4.0 2,-0.2 -1,-0.3 0.936 116.3 42.4 -70.5 -42.4 -9.8 -5.4 -2.3 7 284 A V H X5S+ 0 0 40 -4,-1.1 4,-5.0 2,-0.3 5,-0.3 0.981 110.2 53.5 -69.8 -51.6 -6.9 -6.0 -4.8 8 285 A L H X5S+ 0 0 114 -4,-4.2 4,-1.7 1,-0.2 -1,-0.2 0.887 116.7 44.3 -49.4 -29.0 -5.6 -2.4 -4.7 9 286 A R H XS+ 0 0 44 -4,-5.0 4,-2.2 2,-0.3 5,-1.4 0.950 89.7 62.1 -67.5 -50.7 -1.9 -5.0 -3.9 12 289 A E H <5S+ 0 0 122 -4,-1.7 -1,-0.2 -5,-0.3 -2,-0.2 0.841 111.2 45.6 -47.2 -26.1 -0.3 -2.6 -1.5 13 290 A Q H <5S+ 0 0 131 -4,-0.8 4,-0.4 -3,-0.2 -1,-0.3 0.908 124.7 29.7 -81.4 -47.9 0.8 -5.8 0.0 14 291 A Y H >X5S+ 0 0 170 -4,-2.0 4,-1.3 2,-0.2 3,-0.8 0.944 125.4 39.5 -80.0 -55.6 2.0 -7.5 -3.2 15 292 A V T 3<5S+ 0 0 58 -4,-2.2 -3,-0.2 1,-0.2 -1,-0.1 0.865 111.0 60.5 -70.4 -28.0 3.1 -4.6 -5.4 16 293 A S T >4