==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 31-DEC-08 2KD0 . COMPND 2 MOLECULE: LRR REPEATS AND UBIQUITIN-LIKE DOMAIN-CONTAINING . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR G.V.T.SWAPNA,R.SHASTRY,E.FOOTE,C.CICCOSANTI,M.JIANG,R.XIAO, . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6179.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 80.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 7.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 23 27.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 216 0, 0.0 2,-1.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 136.6 7.7 -27.9 -12.3 2 2 A G - 0 0 72 1,-0.0 2,-0.2 2,-0.0 0, 0.0 -0.508 360.0-149.0 -69.5 90.1 6.5 -26.5 -8.9 3 3 A H - 0 0 149 -2,-1.5 2,-1.3 1,-0.1 -1,-0.0 -0.424 16.5-121.8 -63.6 127.2 5.9 -22.9 -9.8 4 4 A H > - 0 0 158 -2,-0.2 3,-0.7 1,-0.2 -1,-0.1 -0.560 29.6-174.2 -74.0 95.2 6.5 -20.6 -6.8 5 5 A H G > + 0 0 152 -2,-1.3 3,-0.6 1,-0.2 -1,-0.2 0.369 64.0 89.2 -79.6 6.6 3.0 -18.9 -6.6 6 6 A H G 3 S+ 0 0 146 1,-0.3 2,-1.0 3,-0.0 -1,-0.2 0.963 94.5 38.4 -63.1 -53.0 4.1 -16.6 -3.8 7 7 A H G < S+ 0 0 133 -3,-0.7 2,-0.3 2,-0.0 -1,-0.3 -0.576 104.1 94.2 -97.9 68.4 5.3 -13.9 -6.3 8 8 A H < + 0 0 105 -2,-1.0 3,-0.1 -3,-0.6 -3,-0.0 -0.939 65.5 32.7-146.8 168.8 2.5 -14.3 -8.9 9 9 A S S S+ 0 0 132 -2,-0.3 2,-0.1 1,-0.2 -1,-0.1 0.668 87.3 135.7 57.0 16.9 -0.9 -12.8 -9.9 10 10 A H - 0 0 88 19,-0.0 2,-0.3 20,-0.0 -1,-0.2 -0.445 31.3-177.7 -92.0 167.0 0.4 -9.5 -8.6 11 11 A S - 0 0 86 -2,-0.1 2,-0.7 -3,-0.1 17,-0.1 -0.946 35.1 -83.2-155.5 172.7 0.1 -6.0 -10.2 12 12 A T - 0 0 82 -2,-0.3 17,-0.2 17,-0.2 2,-0.2 -0.763 41.4-155.2 -91.4 113.2 1.0 -2.3 -9.9 13 13 A I E -A 28 0A 34 15,-2.7 15,-1.5 -2,-0.7 2,-0.6 -0.549 23.6-106.4 -85.5 150.4 -1.3 -0.4 -7.6 14 14 A K E -A 27 0A 128 13,-0.2 61,-3.1 -2,-0.2 62,-1.2 -0.667 33.3-168.5 -81.7 118.1 -1.8 3.4 -7.9 15 15 A L E -Ab 26 76A 0 11,-2.0 11,-2.9 -2,-0.6 2,-1.1 -0.926 10.3-158.3-108.1 117.5 -0.1 5.4 -5.1 16 16 A T E -Ab 25 77A 50 60,-2.5 62,-2.2 -2,-0.6 2,-0.6 -0.764 18.3-173.6 -93.5 92.5 -1.0 9.1 -4.7 17 17 A V E -Ab 24 78A 1 7,-2.3 7,-3.1 -2,-1.1 2,-0.8 -0.788 12.7-147.3 -94.1 120.3 2.0 10.5 -2.8 18 18 A K E -Ab 23 79A 88 60,-2.9 2,-1.7 -2,-0.6 62,-1.5 -0.768 9.6-165.2 -94.6 106.6 1.8 14.1 -1.7 19 19 A F E > -Ab 22 80A 26 3,-3.3 2,-2.1 -2,-0.8 3,-1.1 -0.600 65.6 -82.3 -79.8 73.5 5.1 16.1 -1.6 20 20 A G T 3 S+ 0 0 74 -2,-1.7 -1,-0.1 60,-0.7 -2,-0.0 -0.376 121.4 4.5 62.4 -82.1 3.5 18.9 0.4 21 21 A G T 3 S+ 0 0 64 -2,-2.1 2,-0.5 1,-0.1 -1,-0.3 0.208 119.9 83.3-115.7 11.9 1.9 20.7 -2.5 22 22 A K E < -A 19 0A 125 -3,-1.1 -3,-3.3 2,-0.0 2,-0.7 -0.937 62.7-155.8-120.8 110.0 2.8 18.2 -5.3 23 23 A S E -A 18 0A 83 -2,-0.5 -5,-0.2 -5,-0.2 -7,-0.0 -0.752 13.2-165.2 -85.0 113.4 0.6 15.1 -5.8 24 24 A I E -A 17 0A 62 -7,-3.1 -7,-2.3 -2,-0.7 2,-0.6 -0.882 10.1-146.4-106.4 110.6 2.7 12.4 -7.5 25 25 A P E +A 16 0A 110 0, 0.0 2,-0.2 0, 0.0 -9,-0.2 -0.647 28.0 175.3 -75.7 117.5 0.8 9.4 -9.1 26 26 A L E -A 15 0A 34 -11,-2.9 -11,-2.0 -2,-0.6 2,-0.3 -0.697 23.7-152.6-116.7 169.5 2.9 6.2 -8.7 27 27 A S E +A 14 0A 69 -13,-0.2 2,-0.2 -2,-0.2 -13,-0.2 -0.809 28.2 152.7-147.5 105.4 2.4 2.5 -9.5 28 28 A V E -A 13 0A 13 -15,-1.5 -15,-2.7 -2,-0.3 -17,-0.1 -0.778 41.2-101.6-127.4 170.7 4.2 -0.2 -7.5 29 29 A S > - 0 0 26 -17,-0.2 3,-2.1 -2,-0.2 38,-0.3 -0.693 25.7-122.9 -94.7 146.4 3.8 -3.9 -6.5 30 30 A P T 3 S+ 0 0 36 0, 0.0 38,-0.6 0, 0.0 39,-0.2 0.580 107.6 75.6 -62.1 -8.6 2.6 -5.1 -3.0 31 31 A D T 3 S+ 0 0 65 35,-0.1 2,-0.0 36,-0.1 -24,-0.0 0.785 83.0 84.9 -69.6 -28.6 5.8 -7.1 -2.9 32 32 A C S < S- 0 0 25 -3,-2.1 35,-1.5 1,-0.1 36,-0.3 -0.294 74.5-132.6 -74.4 157.7 7.7 -3.8 -2.2 33 33 A T B > -E 66 0B 32 33,-0.2 4,-2.0 34,-0.1 33,-0.3 -0.692 25.8-111.7-102.7 162.1 8.2 -2.2 1.3 34 34 A V H > S+ 0 0 3 31,-2.4 4,-1.6 28,-0.4 29,-0.2 0.780 124.9 54.6 -62.7 -24.6 7.6 1.5 2.2 35 35 A K H > S+ 0 0 104 28,-0.8 4,-2.1 30,-0.3 -1,-0.2 0.898 102.5 54.7 -69.8 -43.3 11.4 1.5 2.6 36 36 A D H > S+ 0 0 63 27,-0.3 4,-2.1 1,-0.2 -2,-0.2 0.891 106.1 53.6 -55.6 -40.7 11.8 0.2 -0.9 37 37 A L H X S+ 0 0 2 -4,-2.0 4,-3.1 2,-0.2 5,-0.3 0.926 104.4 53.8 -58.2 -48.2 9.7 3.2 -1.9 38 38 A K H X S+ 0 0 26 -4,-1.6 4,-1.9 1,-0.2 -2,-0.2 0.910 111.6 46.2 -51.9 -44.8 12.1 5.5 -0.1 39 39 A S H < S+ 0 0 74 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.841 114.0 48.0 -68.9 -35.9 14.9 3.9 -2.2 40 40 A Q H < S+ 0 0 80 -4,-2.1 4,-0.4 -5,-0.2 -2,-0.2 0.918 116.5 41.6 -70.4 -45.0 12.9 4.2 -5.5 41 41 A L H >X>S+ 0 0 8 -4,-3.1 4,-3.3 1,-0.2 3,-1.0 0.805 97.7 77.4 -74.4 -29.8 11.9 7.8 -5.0 42 42 A Q H 3X5S+ 0 0 78 -4,-1.9 4,-2.0 -5,-0.3 -1,-0.2 0.897 98.1 41.8 -51.4 -51.8 15.3 9.0 -3.7 43 43 A P H 345S+ 0 0 97 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.694 121.1 46.5 -68.9 -16.7 17.1 9.1 -7.2 44 44 A I H <45S+ 0 0 122 -3,-1.0 -2,-0.2 -4,-0.4 -3,-0.1 0.912 127.5 20.4 -89.2 -52.8 13.9 10.7 -8.6 45 45 A T H <5S- 0 0 50 -4,-3.3 -3,-0.2 2,-0.1 -4,-0.1 0.662 92.0-137.1 -95.0 -20.4 13.0 13.4 -6.1 46 46 A N << + 0 0 133 -4,-2.0 2,-0.4 -5,-0.7 -4,-0.1 0.748 56.0 135.3 68.7 27.6 16.5 13.8 -4.5 47 47 A V - 0 0 23 -6,-0.2 -1,-0.2 -5,-0.1 -2,-0.1 -0.883 65.2 -94.1-108.6 139.4 15.1 13.9 -1.0 48 48 A L >> - 0 0 124 -2,-0.4 4,-1.7 1,-0.1 3,-0.5 -0.183 24.8-136.7 -51.7 131.5 16.7 12.0 2.0 49 49 A P T 34 S+ 0 0 42 0, 0.0 -1,-0.1 0, 0.0 -11,-0.1 0.806 106.0 57.5 -60.9 -30.6 14.9 8.6 2.6 50 50 A R T 34 S+ 0 0 223 1,-0.2 -2,-0.1 3,-0.1 -12,-0.0 0.866 108.9 45.4 -66.0 -37.5 15.0 9.3 6.4 51 51 A G T <4 S+ 0 0 28 -3,-0.5 2,-2.0 1,-0.1 -1,-0.2 0.768 87.8 95.2 -77.6 -27.7 13.1 12.5 5.8 52 52 A Q < - 0 0 2 -4,-1.7 2,-1.0 -5,-0.1 30,-0.2 -0.454 60.9-174.1 -66.2 83.3 10.6 10.8 3.4 53 53 A K E -C 81 0A 92 -2,-2.0 28,-2.1 28,-1.1 2,-0.6 -0.731 10.5-155.8 -88.1 101.4 7.9 10.2 6.1 54 54 A L E -C 80 0A 6 -2,-1.0 7,-2.6 7,-0.2 2,-0.5 -0.680 14.9-177.2 -78.6 118.6 5.1 8.1 4.6 55 55 A I E +CD 79 60A 39 24,-2.9 24,-1.8 -2,-0.6 2,-0.3 -0.936 8.7 163.4-126.6 109.9 1.9 8.7 6.6 56 56 A F E > + D 0 59A 25 3,-2.6 3,-1.7 -2,-0.5 22,-0.1 -0.960 68.9 12.2-127.6 144.4 -1.4 6.8 5.8 57 57 A K T 3 S- 0 0 138 -2,-0.3 -1,-0.1 20,-0.3 3,-0.1 0.633 131.3 -66.8 66.4 16.1 -4.5 6.3 7.9 58 58 A G T 3 S+ 0 0 78 1,-0.3 2,-0.4 -3,-0.1 -1,-0.3 0.699 118.2 118.2 70.1 21.3 -2.9 9.0 10.1 59 59 A K E < -D 56 0A 93 -3,-1.7 -3,-2.6 11,-0.1 2,-0.3 -0.979 66.1-130.7-125.3 124.6 -0.3 6.3 10.7 60 60 A V E -D 55 0A 90 -2,-0.4 2,-0.2 -5,-0.3 -5,-0.2 -0.567 29.0-127.0 -74.0 133.8 3.4 6.5 9.9 61 61 A L - 0 0 17 -7,-2.6 -7,-0.2 -2,-0.3 2,-0.2 -0.593 16.4-131.2 -89.0 145.3 4.6 3.4 8.0 62 62 A V > - 0 0 92 -2,-0.2 3,-2.3 1,-0.1 -28,-0.4 -0.647 22.3-113.4 -97.0 149.0 7.7 1.4 9.2 63 63 A E T 3 S+ 0 0 116 1,-0.3 -28,-0.8 -2,-0.2 -27,-0.3 0.794 117.6 52.9 -47.3 -33.9 10.6 0.2 7.0 64 64 A T T 3 S+ 0 0 111 -30,-0.1 2,-0.4 -31,-0.1 -1,-0.3 0.649 88.9 97.2 -80.0 -16.5 9.5 -3.5 7.5 65 65 A S < - 0 0 12 -3,-2.3 -31,-2.4 4,-0.1 -30,-0.3 -0.631 61.6-152.4 -83.5 125.0 5.9 -2.8 6.4 66 66 A T B > -E 33 0B 20 -2,-0.4 4,-1.9 -33,-0.3 6,-0.3 -0.391 38.6 -92.7 -82.7 169.3 4.9 -3.7 2.8 67 67 A L T 4>S+ 0 0 1 -35,-1.5 5,-2.2 -38,-0.3 -36,-0.1 0.872 132.8 46.5 -50.6 -39.5 2.1 -1.9 0.8 68 68 A K T >45S+ 0 0 162 -38,-0.6 3,-1.6 -36,-0.3 -1,-0.2 0.943 113.4 46.8 -65.3 -49.3 -0.1 -4.8 2.0 69 69 A Q T 345S+ 0 0 114 1,-0.3 -2,-0.2 -39,-0.2 -1,-0.2 0.645 109.9 56.5 -68.0 -15.8 1.1 -4.5 5.6 70 70 A S T 3<5S- 0 0 0 -4,-1.9 -1,-0.3 2,-0.1 -2,-0.2 0.229 113.4-116.9-100.6 11.1 0.7 -0.7 5.3 71 71 A D T < 5 + 0 0 77 -3,-1.6 2,-0.2 1,-0.2 -3,-0.2 0.613 64.7 152.5 64.5 14.8 -3.1 -1.0 4.4 72 72 A V < + 0 0 16 -5,-2.2 2,-0.3 -6,-0.3 -1,-0.2 -0.507 14.9 165.0 -82.6 140.7 -2.2 0.6 1.0 73 73 A G > - 0 0 31 -2,-0.2 3,-1.9 -59,-0.1 2,-0.6 -0.882 49.6 -59.5-143.0 176.3 -4.2 -0.1 -2.2 74 74 A S T 3 S+ 0 0 72 1,-0.3 -59,-0.2 -2,-0.3 -47,-0.1 -0.453 127.9 23.2 -64.4 110.0 -4.8 1.3 -5.7 75 75 A G T 3 S+ 0 0 50 -61,-3.1 2,-0.3 -2,-0.6 -1,-0.3 0.545 86.7 155.9 106.3 14.1 -6.0 4.8 -5.2 76 76 A A E < -b 15 0A 9 -3,-1.9 -60,-2.5 -62,-1.2 2,-1.0 -0.581 41.0-135.5 -77.2 131.7 -4.5 5.3 -1.7 77 77 A K E -b 16 0A 145 -2,-0.3 2,-0.7 -62,-0.1 -20,-0.3 -0.750 23.8-166.7 -90.0 99.0 -3.7 8.9 -0.7 78 78 A L E -b 17 0A 3 -62,-2.2 -60,-2.9 -2,-1.0 2,-0.5 -0.779 10.2-148.8 -94.0 114.6 -0.2 8.8 0.9 79 79 A M E -bC 18 55A 97 -24,-1.8 -24,-2.9 -2,-0.7 2,-0.6 -0.707 13.1-162.7 -78.7 122.6 0.8 12.0 2.9 80 80 A L E -bC 19 54A 3 -62,-1.5 2,-1.7 -2,-0.5 -60,-0.7 -0.895 10.6-154.4-113.5 104.7 4.6 12.4 2.6 81 81 A M E + C 0 53A 113 -28,-2.1 -28,-1.1 -2,-0.6 2,-0.2 -0.579 48.6 132.2 -75.6 85.8 6.1 14.8 5.2 82 82 A A - 0 0 39 -2,-1.7 2,-0.5 -64,-0.2 -30,-0.1 -0.567 58.0 -95.8-126.0-172.5 9.1 15.8 3.1 83 83 A S + 0 0 89 -2,-0.2 -35,-0.1 1,-0.1 -2,-0.0 -0.948 29.4 168.7-118.8 117.5 11.1 19.0 2.0 84 84 A Q 0 0 160 -2,-0.5 -1,-0.1 1,-0.4 -65,-0.0 0.541 360.0 360.0 -93.8 -11.9 10.4 20.8 -1.3 85 85 A G 0 0 123 0, 0.0 -1,-0.4 0, 0.0 0, 0.0 -0.834 360.0 360.0 107.5 360.0 12.6 23.7 -0.1