==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 14-JAN-09 2KDQ . COMPND 2 MOLECULE: L-22 CYCLIC PEPTIDE; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.DAVIDSON,T.C.LEEPER,G.VARANI . 14 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1727.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 42.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 35.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 130 0, 0.0 11,-3.1 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 139.3 115.7 52.0 -28.3 2 2 A V E +A 11 0A 107 12,-0.4 2,-0.3 9,-0.3 9,-0.2 -0.956 360.0 149.3-129.9 118.3 118.0 54.7 -26.8 3 3 A R E -A 10 0A 102 7,-3.0 7,-2.8 -2,-0.5 2,-0.4 -0.839 40.6-111.7-137.1 175.1 119.9 54.2 -23.6 4 4 A T E -A 9 0A 92 5,-0.3 2,-0.4 -2,-0.3 5,-0.3 -0.914 23.0-157.8-114.1 139.5 123.1 55.4 -22.0 5 5 A R E > S-A 8 0A 146 3,-3.0 3,-4.3 -2,-0.4 -2,-0.0 -0.937 74.2 -18.8-117.3 135.2 126.1 53.1 -21.3 6 6 A K T 3 S- 0 0 185 -2,-0.4 -1,-0.2 1,-0.3 3,-0.1 0.845 129.6 -53.9 41.6 33.8 128.8 53.8 -18.7 7 7 A G T 3 S+ 0 0 70 1,-0.3 -1,-0.3 -3,-0.1 2,-0.1 0.188 122.0 113.2 88.2 -20.5 127.5 57.4 -18.9 8 8 A R E < S-A 5 0A 193 -3,-4.3 -3,-3.0 -4,-0.1 2,-0.6 -0.389 78.1-103.2 -80.3 163.0 128.1 57.3 -22.7 9 9 A R E -A 4 0A 169 -5,-0.3 2,-0.5 -3,-0.1 -5,-0.3 -0.766 40.6-178.9 -90.9 120.1 125.1 57.4 -25.1 10 10 A I E -A 3 0A 41 -7,-2.8 -7,-3.0 -2,-0.6 2,-0.4 -0.961 4.2-170.0-119.8 128.8 124.2 54.0 -26.6 11 11 A R E -A 2 0A 161 -2,-0.5 2,-0.5 -9,-0.2 -9,-0.3 -0.949 5.7-171.2-119.9 138.4 121.3 53.5 -29.1 12 12 A I - 0 0 76 -11,-3.1 -2,-0.0 -2,-0.4 0, 0.0 -0.930 53.4 -72.7-130.5 109.6 119.9 50.2 -30.3 13 13 A X 0 0 119 -2,-0.5 -1,-0.1 1,-0.3 0, 0.0 -0.144 360.0 360.0 45.4-121.3 117.4 50.3 -33.1 14 14 A P 0 0 136 0, 0.0 -12,-0.4 0, 0.0 -1,-0.3 0.037 360.0 360.0 -83.4 360.0 114.1 51.7 -31.7