==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 21-JAN-09 2KDZ . COMPND 2 MOLECULE: MYB24; . SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; . AUTHOR Y.C.LOU,S.Y.WEI,M.RAJASEKARAN,C.C.CHOU,H.M.HSU,J.H.TAI, . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9102.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 67.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 44.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 3 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 241 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -46.2 2.1 16.0 9.4 2 2 A V - 0 0 132 1,-0.2 3,-0.1 2,-0.1 0, 0.0 0.465 360.0-139.2 -88.8 0.7 1.2 13.1 7.1 3 3 A K + 0 0 122 1,-0.1 -1,-0.2 31,-0.0 31,-0.0 0.085 58.1 61.8 63.4 175.3 4.2 13.9 4.8 4 4 A F - 0 0 64 1,-0.1 2,-0.3 -3,-0.1 -1,-0.1 0.189 51.9-176.5 60.4 176.8 4.3 13.8 1.0 5 5 A T > - 0 0 68 1,-0.1 4,-2.0 -3,-0.1 5,-0.1 -0.908 44.9 -82.5 170.3 172.0 2.2 15.9 -1.3 6 6 A E H > S+ 0 0 158 -2,-0.3 4,-2.3 1,-0.2 5,-0.2 0.911 124.0 55.6 -62.5 -43.5 1.5 16.4 -5.1 7 7 A E H > S+ 0 0 139 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.888 112.8 41.7 -56.6 -42.6 4.6 18.6 -5.5 8 8 A E H > S+ 0 0 55 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.832 110.2 57.8 -75.0 -33.1 6.9 15.9 -4.1 9 9 A D H X S+ 0 0 7 -4,-2.0 4,-1.3 1,-0.2 -2,-0.2 0.886 104.3 51.9 -64.2 -39.2 5.0 13.1 -6.0 10 10 A L H X S+ 0 0 118 -4,-2.3 4,-0.9 1,-0.2 -1,-0.2 0.857 107.8 52.5 -64.9 -35.3 5.8 14.8 -9.3 11 11 A K H X S+ 0 0 101 -4,-1.0 4,-2.9 -5,-0.2 -1,-0.2 0.829 99.1 65.4 -68.8 -31.9 9.4 14.9 -8.3 12 12 A L H X S+ 0 0 2 -4,-1.5 4,-3.4 1,-0.2 5,-0.3 0.927 97.5 53.1 -55.7 -48.8 9.3 11.2 -7.7 13 13 A Q H X S+ 0 0 67 -4,-1.3 4,-1.5 1,-0.2 -1,-0.2 0.872 112.9 45.0 -54.9 -38.8 8.6 10.5 -11.3 14 14 A Q H X S+ 0 0 105 -4,-0.9 4,-1.8 2,-0.2 -1,-0.2 0.909 114.0 48.4 -72.3 -43.0 11.7 12.5 -12.2 15 15 A L H X>S+ 0 0 12 -4,-2.9 4,-3.6 2,-0.2 5,-0.6 0.911 111.0 49.7 -64.2 -44.5 13.8 10.9 -9.5 16 16 A V H X5S+ 0 0 9 -4,-3.4 4,-1.7 1,-0.2 -1,-0.2 0.892 110.5 51.6 -62.4 -39.6 12.8 7.3 -10.4 17 17 A M H <5S+ 0 0 148 -4,-1.5 -1,-0.2 -5,-0.3 -2,-0.2 0.871 119.6 34.8 -65.3 -38.0 13.7 8.1 -14.1 18 18 A R H <5S+ 0 0 155 -4,-1.8 -2,-0.2 2,-0.1 -3,-0.2 0.899 128.9 31.6 -84.8 -45.0 17.1 9.4 -13.1 19 19 A Y H <5S- 0 0 69 -4,-3.6 4,-0.3 1,-0.3 2,-0.3 0.833 104.2-132.4 -85.1 -34.8 18.1 7.1 -10.2 20 20 A G << - 0 0 27 -4,-1.7 -1,-0.3 -5,-0.6 -2,-0.1 -0.745 32.1 -61.9 116.6-164.6 16.2 4.0 -11.3 21 21 A A S S+ 0 0 66 -2,-0.3 -1,-0.1 -4,-0.1 -5,-0.1 0.062 128.1 33.3-112.8 24.1 13.9 1.5 -9.6 22 22 A K S S+ 0 0 175 -3,-0.2 2,-1.9 -6,-0.1 3,-0.4 0.481 93.4 80.0-144.8 -32.9 16.4 0.3 -6.9 23 23 A D >> + 0 0 54 -4,-0.3 3,-1.4 1,-0.2 4,-0.6 -0.227 50.5 139.4 -79.4 50.6 18.6 3.2 -6.0 24 24 A W H 3> + 0 0 13 -2,-1.9 4,-1.8 1,-0.3 -1,-0.2 0.667 57.2 75.2 -69.0 -15.6 15.9 4.5 -3.7 25 25 A I H 34 S+ 0 0 104 -3,-0.4 4,-0.3 1,-0.2 -1,-0.3 0.799 88.4 59.9 -66.3 -28.0 18.6 5.4 -1.2 26 26 A R H X4 S+ 0 0 77 -3,-1.4 3,-0.9 1,-0.2 4,-0.3 0.896 107.5 43.9 -64.9 -40.3 19.5 8.3 -3.4 27 27 A I H >X S+ 0 0 1 -4,-0.6 4,-2.3 1,-0.2 3,-1.5 0.820 103.4 66.0 -74.1 -30.0 15.9 9.7 -3.0 28 28 A S T 3< S+ 0 0 10 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.584 91.8 64.5 -68.1 -9.4 16.1 8.9 0.7 29 29 A Q T <4 S+ 0 0 133 -3,-0.9 -1,-0.3 -4,-0.3 3,-0.2 0.707 110.1 36.1 -84.1 -23.1 18.9 11.6 0.9 30 30 A L T <4 S+ 0 0 113 -3,-1.5 2,-0.5 -4,-0.3 -2,-0.2 0.736 130.7 33.4 -95.9 -32.0 16.3 14.2 -0.1 31 31 A M < + 0 0 23 -4,-2.3 -1,-0.3 1,-0.1 3,-0.2 -0.922 62.0 153.5-128.5 103.6 13.5 12.6 1.9 32 32 A I + 0 0 138 -2,-0.5 -1,-0.1 -3,-0.2 -4,-0.1 0.582 61.5 78.3-105.8 -13.9 14.7 10.9 5.1 33 33 A T S S+ 0 0 99 2,-0.1 2,-0.3 0, 0.0 -1,-0.1 0.225 91.7 65.6 -81.0 15.6 11.4 11.2 7.0 34 34 A R S S- 0 0 45 -3,-0.2 -3,-0.1 -6,-0.1 5,-0.1 -0.990 92.8 -99.7-141.8 148.2 10.0 8.3 5.0 35 35 A N >> - 0 0 90 -2,-0.3 3,-2.0 1,-0.1 4,-0.9 -0.505 33.4-133.6 -63.2 122.3 10.6 4.5 4.6 36 36 A P H >> S+ 0 0 36 0, 0.0 4,-0.9 0, 0.0 3,-0.7 0.837 106.5 56.5 -47.6 -38.9 12.7 4.1 1.4 37 37 A R H 3> S+ 0 0 157 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.763 98.7 61.5 -67.1 -24.1 10.3 1.3 0.3 38 38 A Q H <> S+ 0 0 65 -3,-2.0 4,-1.8 2,-0.2 -1,-0.2 0.792 95.9 58.3 -74.3 -28.4 7.4 3.6 0.6 39 39 A C H S+ 0 0 78 -4,-1.8 4,-0.7 2,-0.2 5,-0.6 0.940 114.3 47.9 -72.0 -47.9 3.8 5.2 -4.3 43 43 A W H >X>S+ 0 0 51 -4,-1.6 5,-2.1 1,-0.2 4,-1.0 0.941 115.7 46.0 -56.5 -47.1 5.6 4.9 -7.7 44 44 A N H 3<5S+ 0 0 23 -4,-3.2 -1,-0.2 1,-0.2 -2,-0.2 0.756 118.9 41.3 -68.9 -26.2 4.4 1.3 -8.0 45 45 A N H 3<5S+ 0 0 18 -4,-1.3 -1,-0.2 -5,-0.2 -2,-0.2 0.284 129.7 19.4-107.2 10.4 0.8 2.2 -6.9 46 46 A Y H <<5S+ 0 0 121 -3,-0.9 -3,-0.2 -4,-0.7 -2,-0.1 0.542 130.2 25.9-141.8 -50.1 0.3 5.4 -8.8 47 47 A I T <> - 0 0 45 -2,-0.1 4,-2.2 -3,-0.1 3,-1.4 -0.430 32.7-101.6 -87.1 163.0 -15.5 -6.6 -11.6 58 58 A P H 3> S+ 0 0 88 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.750 122.4 64.8 -54.4 -23.9 -17.7 -9.3 -9.8 59 59 A E H 3> S+ 0 0 130 2,-0.2 4,-0.6 1,-0.2 5,-0.1 0.895 107.8 39.1 -66.6 -38.8 -15.9 -11.8 -12.0 60 60 A E H <> S+ 0 0 45 -3,-1.4 4,-3.7 2,-0.2 5,-0.2 0.850 110.5 60.8 -77.5 -36.5 -12.6 -10.9 -10.2 61 61 A D H X S+ 0 0 33 -4,-2.2 4,-0.6 1,-0.2 -2,-0.2 0.919 111.3 38.5 -56.5 -46.2 -14.4 -10.6 -6.8 62 62 A M H < S+ 0 0 146 -4,-2.2 4,-0.5 2,-0.2 -1,-0.2 0.656 117.9 51.3 -80.8 -15.6 -15.5 -14.3 -7.0 63 63 A L H >X S+ 0 0 74 -4,-0.6 4,-2.8 -5,-0.2 3,-1.0 0.880 103.5 56.2 -85.1 -42.3 -12.2 -15.3 -8.5 64 64 A L H 3< S+ 0 0 3 -4,-3.7 5,-0.2 1,-0.3 -2,-0.2 0.691 93.7 72.1 -62.2 -20.8 -10.1 -13.6 -5.8 65 65 A D T 3X S+ 0 0 112 -4,-0.6 4,-1.0 -5,-0.2 -1,-0.3 0.933 112.1 27.0 -60.2 -44.3 -12.0 -15.6 -3.3 66 66 A Q H <> S+ 0 0 130 -3,-1.0 2,-2.3 -4,-0.5 4,-0.7 0.851 113.4 67.6 -84.7 -38.5 -10.1 -18.7 -4.4 67 67 A K H < S+ 0 0 66 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.1 -0.334 111.2 34.6 -80.5 57.9 -7.1 -16.7 -5.6 68 68 A Y H 4 S+ 0 0 63 -2,-2.3 6,-0.2 -3,-0.2 -1,-0.2 0.070 105.3 62.8-171.7 -47.3 -6.3 -15.8 -2.0 69 69 A A H < S+ 0 0 77 -4,-1.0 -2,-0.2 -5,-0.2 -3,-0.1 0.504 110.5 46.4 -73.1 -2.3 -7.3 -18.8 0.1 70 70 A E S < S+ 0 0 137 -4,-0.7 -1,-0.2 2,-0.2 -3,-0.1 0.700 123.6 28.9-107.7 -32.2 -4.6 -20.7 -1.8 71 71 A Y S > S- 0 0 123 1,-0.4 3,-2.2 -5,-0.2 -2,-0.2 -0.280 99.0-133.2-125.7 48.2 -1.8 -18.2 -1.6 72 72 A G T 3 S- 0 0 35 1,-0.2 -1,-0.4 2,-0.1 -2,-0.2 0.060 70.1 -26.7 34.6-138.6 -2.7 -16.5 1.7 73 73 A P T 3 S+ 0 0 74 0, 0.0 2,-2.2 0, 0.0 3,-0.3 -0.109 89.7 139.9 -93.0 36.5 -2.5 -12.7 1.6 74 74 A K X> + 0 0 118 -3,-2.2 3,-1.9 -6,-0.2 4,-1.8 -0.299 10.6 155.6 -78.5 55.6 0.0 -12.8 -1.2 75 75 A W H 3> + 0 0 11 -2,-2.2 4,-2.9 1,-0.3 -1,-0.2 0.804 67.5 68.3 -50.9 -31.3 -1.6 -9.8 -3.0 76 76 A N H 34 S+ 0 0 83 -3,-0.3 -1,-0.3 1,-0.2 4,-0.2 0.853 107.8 37.0 -56.3 -38.2 1.8 -9.2 -4.6 77 77 A K H X4 S+ 0 0 116 -3,-1.9 3,-0.7 -6,-0.2 4,-0.5 0.793 113.7 57.2 -84.2 -31.5 1.4 -12.5 -6.5 78 78 A I H >X S+ 0 0 0 -4,-1.8 3,-1.4 1,-0.2 4,-1.2 0.869 97.6 60.4 -68.9 -36.7 -2.4 -11.9 -7.0 79 79 A S T 3< S+ 0 0 20 -4,-2.9 5,-0.4 1,-0.3 -1,-0.2 0.690 98.5 61.7 -64.3 -16.2 -1.8 -8.6 -8.8 80 80 A K T <4 S+ 0 0 133 -3,-0.7 3,-0.3 -5,-0.2 -1,-0.3 0.738 103.4 46.8 -81.1 -24.6 0.2 -10.6 -11.3 81 81 A F T <4 S+ 0 0 106 -3,-1.4 2,-0.5 -4,-0.5 -2,-0.2 0.695 115.2 49.4 -87.0 -21.4 -2.9 -12.6 -12.2 82 82 A L S >< S- 0 0 37 -4,-1.2 3,-1.5 3,-0.1 2,-1.5 -0.723 81.2-158.8-120.0 77.1 -4.9 -9.4 -12.5 83 83 A K T 3 S+ 0 0 199 -2,-0.5 -3,-0.1 -3,-0.3 3,-0.1 -0.391 75.9 54.6 -60.3 87.4 -2.8 -7.2 -14.7 84 84 A N T 3 S+ 0 0 89 -2,-1.5 -34,-0.8 1,-0.5 2,-0.3 0.149 92.5 60.1 177.3 -37.4 -4.3 -3.8 -13.7 85 85 A R < - 0 0 28 -3,-1.5 -1,-0.5 -6,-0.2 2,-0.2 -0.812 61.1-146.0-116.3 156.5 -4.2 -3.3 -9.9 86 86 A S > - 0 0 7 -2,-0.3 4,-3.1 -41,-0.1 3,-0.4 -0.573 31.9 -87.6-113.3 178.0 -1.3 -3.1 -7.3 87 87 A D H > S+ 0 0 45 1,-0.2 4,-2.9 2,-0.2 5,-0.4 0.938 119.9 37.4 -47.3 -78.5 -0.7 -4.1 -3.7 88 88 A N H > S+ 0 0 73 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.617 121.0 52.3 -58.0 -11.3 -1.8 -1.1 -1.5 89 89 A N H > S+ 0 0 16 -3,-0.4 4,-2.2 3,-0.1 -1,-0.2 0.885 113.3 38.5 -90.0 -46.3 -4.7 -0.7 -4.0 90 90 A I H X S+ 0 0 3 -4,-3.1 4,-3.0 -3,-0.2 5,-0.2 0.925 117.0 51.1 -69.8 -45.9 -6.1 -4.2 -4.0 91 91 A R H X S+ 0 0 103 -4,-2.9 4,-2.0 -5,-0.3 5,-0.2 0.930 113.1 46.1 -56.7 -47.1 -5.5 -4.7 -0.2 92 92 A N H X S+ 0 0 87 -4,-0.5 4,-1.8 -5,-0.4 -1,-0.2 0.937 116.6 44.5 -60.7 -48.2 -7.3 -1.4 0.4 93 93 A R H X S+ 0 0 75 -4,-2.2 4,-3.5 2,-0.2 5,-0.3 0.810 108.3 57.9 -68.3 -32.4 -10.2 -2.3 -1.9 94 94 A W H X S+ 0 0 46 -4,-3.0 4,-2.1 2,-0.2 -1,-0.2 0.942 110.9 41.6 -64.1 -47.1 -10.5 -5.8 -0.6 95 95 A M H X S+ 0 0 141 -4,-2.0 4,-1.0 -5,-0.2 -1,-0.2 0.858 117.1 51.3 -67.3 -34.0 -11.1 -4.6 2.9 96 96 A M H >X S+ 0 0 110 -4,-1.8 3,-0.6 -5,-0.2 4,-0.6 0.949 112.7 42.3 -67.3 -51.2 -13.4 -1.9 1.5 97 97 A I H >X S+ 0 0 58 -4,-3.5 4,-2.7 1,-0.2 3,-1.0 0.829 107.8 62.2 -67.0 -31.0 -15.5 -4.3 -0.7 98 98 A A H 3X S+ 0 0 38 -4,-2.1 4,-2.7 -5,-0.3 -1,-0.2 0.822 94.2 62.7 -64.2 -30.4 -15.6 -6.8 2.2 99 99 A R H << S+ 0 0 222 -4,-1.0 -1,-0.3 -3,-0.6 -2,-0.2 0.789 113.7 34.3 -65.2 -27.5 -17.4 -4.2 4.3 100 100 A H H X< S+ 0 0 150 -3,-1.0 3,-1.2 -4,-0.6 -2,-0.2 0.792 116.4 54.1 -94.7 -36.0 -20.2 -4.3 1.7 101 101 A R H 3< S+ 0 0 151 -4,-2.7 -2,-0.2 1,-0.3 -3,-0.2 0.870 100.9 60.1 -66.2 -38.9 -20.0 -8.0 0.9 102 102 A A T 3< S- 0 0 82 -4,-2.7 -1,-0.3 -5,-0.2 -2,-0.1 0.450 103.0-144.4 -70.4 0.9 -20.3 -9.0 4.5 103 103 A K < - 0 0 144 -3,-1.2 2,-0.3 1,-0.1 -1,-0.2 -0.059 15.7 -88.3 63.6-168.5 -23.7 -7.3 4.5 104 104 A H - 0 0 155 -3,-0.1 -1,-0.1 -4,-0.0 2,-0.1 -0.816 31.8-151.5-146.6 100.6 -25.1 -5.4 7.5 105 105 A Q + 0 0 204 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.427 40.9 129.1 -71.1 145.9 -27.2 -7.2 10.2 106 106 A K 0 0 204 1,-0.2 -1,-0.2 -2,-0.1 0, 0.0 0.223 360.0 360.0-158.2 -60.3 -29.8 -5.1 12.1 107 107 A S 0 0 187 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.969 360.0 360.0-168.1 360.0 -33.2 -6.7 12.2