==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-JAN-09 2KEB . COMPND 2 MOLECULE: DNA POLYMERASE SUBUNIT ALPHA B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.HUANG,B.E.WEINER,H.ZHANG,B.E.FULLER,Y.GAO,B.M.WILE,W.J.CHA . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5533.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 76.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 51.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 217 0, 0.0 2,-0.2 0, 0.0 31,-0.0 0.000 360.0 360.0 360.0 126.9 5.9 -5.7 -1.0 2 2 A S - 0 0 68 1,-0.1 27,-0.1 29,-0.0 26,-0.0 -0.703 360.0-146.8-104.6 155.0 8.3 -3.0 0.3 3 3 A A - 0 0 27 -2,-0.2 35,-0.1 25,-0.1 4,-0.1 0.422 61.6-108.1 -89.7 -4.0 8.2 -0.3 3.1 4 4 A S >> - 0 0 50 3,-0.1 4,-1.5 2,-0.1 3,-1.3 0.967 21.2-146.4 78.2 96.2 10.4 1.9 0.8 5 5 A A H 3> S+ 0 0 27 1,-0.3 4,-2.6 2,-0.2 5,-0.1 0.813 97.3 61.9 -57.9 -33.1 14.1 2.4 1.8 6 6 A Q H 3> S+ 0 0 177 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.779 105.6 46.0 -67.0 -28.2 14.1 6.0 0.3 7 7 A Q H <4 S+ 0 0 122 -3,-1.3 4,-0.5 2,-0.2 3,-0.3 0.838 113.5 49.0 -81.6 -34.5 11.4 7.1 2.9 8 8 A L H >X S+ 0 0 2 -4,-1.5 3,-1.4 1,-0.2 4,-1.2 0.926 104.6 59.6 -67.7 -43.1 13.2 5.4 5.8 9 9 A A H 3X S+ 0 0 20 -4,-2.6 4,-1.2 1,-0.3 -1,-0.2 0.727 93.0 66.5 -60.1 -26.8 16.6 7.0 4.8 10 10 A E H 3< S+ 0 0 118 -4,-0.5 -1,-0.3 -3,-0.3 4,-0.3 0.826 103.4 45.9 -65.0 -30.9 15.1 10.6 5.3 11 11 A E H X> S+ 0 0 59 -3,-1.4 3,-1.6 -4,-0.5 4,-1.2 0.889 104.1 60.4 -79.6 -39.4 14.8 9.9 9.0 12 12 A L H 3X>S+ 0 0 8 -4,-1.2 5,-2.1 1,-0.3 4,-0.9 0.827 99.6 58.7 -55.8 -34.5 18.3 8.4 9.5 13 13 A Q H 3<5S+ 0 0 140 -4,-1.2 -1,-0.3 3,-0.2 -2,-0.2 0.657 101.7 54.7 -71.7 -19.2 19.8 11.8 8.3 14 14 A I H <45S+ 0 0 111 -3,-1.6 -1,-0.2 -4,-0.3 -2,-0.2 0.909 116.1 34.8 -77.4 -45.5 18.0 13.7 11.1 15 15 A F H <5S- 0 0 110 -4,-1.2 -2,-0.2 2,-0.1 -1,-0.1 0.456 111.3-112.5 -93.3 -6.0 19.4 11.7 14.0 16 16 A G T <5 + 0 0 53 -4,-0.9 2,-1.3 1,-0.2 -3,-0.2 0.771 53.5 165.6 79.1 28.4 22.9 11.0 12.4 17 17 A L < - 0 0 16 -5,-2.1 2,-0.7 -6,-0.2 -1,-0.2 -0.637 26.0-152.1 -80.8 89.2 22.3 7.2 12.0 18 18 A D B +a 56 0A 115 -2,-1.3 39,-2.2 37,-0.8 2,-0.3 -0.572 31.1 152.3 -73.6 110.7 25.2 6.3 9.6 19 19 A C - 0 0 22 -2,-0.7 2,-0.2 37,-0.1 39,-0.1 -0.981 39.7-130.3-134.9 144.6 24.1 3.2 7.4 20 20 A E >> - 0 0 138 -2,-0.3 4,-2.1 37,-0.1 3,-1.5 -0.534 44.6 -96.0 -79.8 164.1 25.0 1.8 4.0 21 21 A E H 3> S+ 0 0 147 1,-0.3 4,-2.8 2,-0.2 5,-0.2 0.841 126.4 58.0 -51.2 -38.3 22.1 0.8 1.6 22 22 A A H 3> S+ 0 0 57 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.800 110.5 42.8 -65.0 -28.9 22.4 -2.8 2.8 23 23 A L H <> S+ 0 0 18 -3,-1.5 4,-0.9 2,-0.2 -2,-0.2 0.774 111.8 53.7 -87.8 -27.9 21.8 -1.7 6.5 24 24 A I H >X S+ 0 0 28 -4,-2.1 4,-1.4 1,-0.2 3,-0.8 0.945 108.9 49.8 -65.1 -47.3 18.9 0.7 5.4 25 25 A E H 3X S+ 0 0 99 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.808 98.5 68.8 -62.0 -28.2 17.2 -2.2 3.7 26 26 A K H 3X S+ 0 0 47 -4,-0.6 4,-1.5 1,-0.2 -1,-0.2 0.897 102.1 44.8 -59.6 -37.7 17.7 -4.3 6.9 27 27 A L H S+ 0 0 5 -4,-2.7 5,-1.6 1,-0.2 4,-1.0 0.881 116.0 42.3 -56.1 -39.9 8.9 -3.2 8.6 32 32 A V H <5S+ 0 0 74 -4,-2.3 -2,-0.2 3,-0.2 -1,-0.2 0.884 117.4 45.2 -75.4 -42.6 7.7 -5.8 6.1 33 33 A Q H <5S+ 0 0 148 -4,-2.6 -2,-0.2 -5,-0.2 -3,-0.2 0.891 122.7 35.2 -69.4 -43.1 8.1 -8.9 8.3 34 34 A Y H <5S- 0 0 38 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.634 102.8-126.0 -87.7 -17.1 6.5 -7.2 11.5 35 35 A G T <5 + 0 0 67 -4,-1.0 2,-0.3 -5,-0.4 -3,-0.2 0.914 63.3 142.1 71.0 43.2 3.9 -5.1 9.5 36 36 A Q < - 0 0 95 -5,-1.6 -1,-0.2 -6,-0.2 -2,-0.1 -0.924 56.9-106.4-127.8 140.6 5.1 -2.0 11.3 37 37 A N >> - 0 0 77 -2,-0.3 3,-1.9 1,-0.1 4,-0.8 -0.399 30.8-122.0 -66.3 141.1 5.7 1.7 10.4 38 38 A E H 3> S+ 0 0 37 1,-0.3 4,-2.9 2,-0.2 5,-0.3 0.667 103.8 75.8 -63.4 -21.3 9.4 2.8 10.0 39 39 A E H 3> S+ 0 0 129 2,-0.2 4,-1.4 1,-0.2 -1,-0.3 0.767 99.9 47.1 -63.0 -22.3 9.2 5.5 12.7 40 40 A G H <> S+ 0 0 21 -3,-1.9 4,-2.5 3,-0.2 5,-0.4 0.933 112.6 47.0 -77.0 -50.4 9.3 2.6 15.2 41 41 A M H < S+ 0 0 1 -4,-0.8 4,-0.4 1,-0.2 -2,-0.2 0.842 123.7 34.5 -61.9 -37.4 12.3 0.8 13.5 42 42 A V H X S+ 0 0 3 -4,-2.9 4,-0.7 2,-0.1 -1,-0.2 0.890 121.4 47.2 -79.6 -44.9 14.2 4.2 13.2 43 43 A G H >X S+ 0 0 30 -4,-1.4 3,-0.6 -5,-0.3 4,-0.6 0.905 113.1 43.3 -71.7 -44.6 13.0 5.7 16.6 44 44 A E H 3X S+ 0 0 88 -4,-2.5 4,-0.8 1,-0.2 3,-0.3 0.742 106.0 64.6 -76.4 -22.2 13.5 2.8 19.0 45 45 A L H 3> S+ 0 0 1 -5,-0.4 4,-2.3 -4,-0.4 -1,-0.2 0.774 89.4 68.3 -67.4 -29.0 17.0 2.0 17.5 46 46 A I H S+ 0 0 9 -4,-2.3 4,-0.9 2,-0.2 5,-0.7 0.846 112.5 50.6 -62.3 -35.3 22.9 3.3 19.6 50 50 A T H <5S+ 0 0 92 -4,-2.6 3,-0.4 2,-0.2 -2,-0.2 0.938 109.8 49.8 -65.1 -47.0 22.9 5.8 22.6 51 51 A S H <5S+ 0 0 98 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.832 116.7 40.4 -64.2 -34.6 23.5 2.9 25.1 52 52 A T H <5S- 0 0 50 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.2 0.600 102.9-136.6 -83.6 -15.0 26.4 1.5 23.0 53 53 A H T <5 + 0 0 166 -4,-0.9 2,-0.3 -3,-0.4 -3,-0.2 0.483 49.1 154.2 71.2 7.4 27.7 5.1 22.3 54 54 A K < - 0 0 121 -5,-0.7 -1,-0.2 1,-0.1 -2,-0.1 -0.513 36.7-165.1 -75.6 127.2 28.2 4.1 18.6 55 55 A V S S+ 0 0 131 -2,-0.3 -37,-0.8 -38,-0.1 2,-0.3 0.577 79.5 41.0 -83.3 -12.2 28.1 7.0 15.9 56 56 A G B S-a 18 0A 19 -39,-0.1 2,-0.2 -7,-0.1 -37,-0.1 -0.974 79.8-129.8-137.7 150.5 27.8 4.4 13.1 57 57 A L - 0 0 17 -39,-2.2 2,-0.3 -2,-0.3 -37,-0.1 -0.551 16.1-161.3-103.7 162.4 25.9 1.1 12.7 58 58 A T > - 0 0 63 -2,-0.2 4,-2.2 -39,-0.1 5,-0.3 -0.873 39.9-100.8-134.5 165.4 26.9 -2.5 11.6 59 59 A S H > S+ 0 0 96 -2,-0.3 4,-0.9 1,-0.2 5,-0.1 0.768 125.1 54.2 -59.1 -25.2 25.3 -5.7 10.3 60 60 A E H > S+ 0 0 141 2,-0.2 4,-3.0 3,-0.2 -1,-0.2 0.908 106.5 49.7 -75.3 -43.3 25.6 -6.9 13.9 61 61 A I H > S+ 0 0 18 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.948 113.7 44.6 -61.9 -49.3 23.7 -3.9 15.4 62 62 A L H < S+ 0 0 0 -4,-2.2 4,-0.4 2,-0.2 -1,-0.2 0.750 115.0 50.0 -72.3 -20.3 20.8 -4.2 13.0 63 63 A N H >X S+ 0 0 80 -4,-0.9 3,-1.2 -5,-0.3 4,-0.5 0.933 112.0 46.5 -72.6 -50.3 20.7 -8.0 13.6 64 64 A S H >X S+ 0 0 45 -4,-3.0 4,-2.4 1,-0.2 3,-1.1 0.821 97.1 73.7 -64.2 -29.1 20.8 -7.6 17.4 65 65 A F H 3X>S+ 0 0 1 -4,-2.1 4,-1.2 1,-0.3 5,-1.2 0.798 89.0 61.1 -55.0 -30.9 18.0 -4.9 17.2 66 66 A E H <4>S+ 0 0 43 -3,-1.2 5,-2.8 -4,-0.4 6,-0.3 0.878 115.6 31.7 -61.4 -39.3 15.5 -7.7 16.5 67 67 A H H <<5S+ 0 0 122 -3,-1.1 -2,-0.2 -4,-0.5 -1,-0.2 0.710 113.8 61.9 -91.1 -26.1 16.3 -9.3 19.9 68 68 A E H <5S- 0 0 89 -4,-2.4 -2,-0.2 3,-0.1 -3,-0.2 0.726 133.0 -16.5 -73.3 -24.4 17.0 -6.0 21.8 69 69 A F T X5S+ 0 0 59 -4,-1.2 4,-0.6 -5,-0.2 -3,-0.2 0.530 124.9 60.3-148.8 -45.5 13.4 -4.6 21.3 70 70 A L H >> S+ 0 0 76 1,-0.2 3,-1.0 2,-0.1 -1,-0.1 0.738 82.6 68.4 -81.2 -23.4 1.8 -9.5 19.5 76 76 A K T 3 S+ 0 0 147 1,-0.2 -1,-0.2 2,-0.2 -2,-0.1 0.684 95.5 56.0 -71.1 -20.2 1.9 -12.1 16.6 77 77 A A T 3 0 0 85 -3,-0.4 -1,-0.2 1,-0.1 -2,-0.1 0.526 360.0 360.0 -87.8 -10.8 3.6 -14.6 19.0 78 78 A R < 0 0 255 -3,-1.0 -2,-0.2 -4,-0.1 -1,-0.1 0.887 360.0 360.0 -71.8 360.0 0.9 -14.5 21.7