==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 18-FEB-09 2KFD . COMPND 2 MOLECULE: PRE-MRNA-PROCESSING PROTEIN PRP40; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR R.BONET,L.RUIZ,B.MORALES,M.MACIAS . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4913.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 63.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 49.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 5 A N > 0 0 139 0, 0.0 4,-2.2 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -34.3 18.1 -3.3 0.5 2 6 A E H > + 0 0 99 2,-0.2 4,-3.0 1,-0.2 5,-0.1 0.778 360.0 57.3 -73.6 -24.8 15.3 -0.7 0.2 3 7 A R H > S+ 0 0 161 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.910 107.5 46.4 -65.4 -44.2 14.2 -2.7 -2.8 4 8 A R H > S+ 0 0 204 2,-0.2 4,-1.7 1,-0.2 -2,-0.2 0.899 115.8 46.3 -62.8 -41.3 14.0 -5.8 -0.6 5 9 A I H X S+ 0 0 87 -4,-2.2 4,-2.9 2,-0.2 5,-0.2 0.906 108.2 55.8 -67.2 -43.6 12.1 -3.7 2.0 6 10 A L H X S+ 0 0 24 -4,-3.0 4,-2.3 1,-0.2 -2,-0.2 0.870 108.7 47.1 -58.4 -40.7 9.8 -2.2 -0.7 7 11 A E H X S+ 0 0 109 -4,-1.8 4,-2.0 2,-0.2 -1,-0.2 0.883 111.3 51.3 -70.7 -39.8 8.7 -5.7 -1.8 8 12 A Q H X S+ 0 0 111 -4,-1.7 4,-2.0 1,-0.2 -2,-0.2 0.930 115.1 42.4 -57.9 -47.2 8.1 -6.7 1.8 9 13 A K H X S+ 0 0 52 -4,-2.9 4,-3.3 2,-0.2 5,-0.3 0.840 106.3 64.6 -70.5 -32.1 6.0 -3.6 2.3 10 14 A K H X S+ 0 0 77 -4,-2.3 4,-1.3 -5,-0.2 -2,-0.2 0.949 109.7 37.5 -53.2 -51.9 4.4 -4.2 -1.1 11 15 A H H X S+ 0 0 118 -4,-2.0 4,-1.9 1,-0.2 -1,-0.2 0.913 118.7 49.5 -67.2 -41.8 2.8 -7.4 0.1 12 16 A Y H X S+ 0 0 112 -4,-2.0 4,-2.2 1,-0.2 -2,-0.2 0.829 109.9 49.8 -72.4 -30.8 2.1 -6.1 3.6 13 17 A F H X S+ 0 0 0 -4,-3.3 4,-3.4 2,-0.2 -1,-0.2 0.789 111.6 49.4 -76.5 -27.2 0.5 -2.9 2.3 14 18 A W H X S+ 0 0 53 -4,-1.3 4,-2.4 -5,-0.3 -2,-0.2 0.830 111.0 50.4 -73.3 -30.8 -1.6 -5.1 0.1 15 19 A L H X S+ 0 0 72 -4,-1.9 4,-1.8 2,-0.2 -2,-0.2 0.891 116.6 41.2 -71.3 -38.1 -2.3 -7.1 3.2 16 20 A L H X S+ 0 0 18 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.913 117.1 46.1 -70.9 -49.0 -3.2 -3.8 4.9 17 21 A L H X S+ 0 0 0 -4,-3.4 4,-2.8 1,-0.2 -2,-0.2 0.835 118.5 43.5 -69.7 -31.7 -5.2 -2.4 1.9 18 22 A Q H < S+ 0 0 69 -4,-2.4 8,-0.2 2,-0.2 -1,-0.2 0.853 109.7 56.6 -77.9 -38.1 -6.9 -5.8 1.5 19 23 A R H < S+ 0 0 135 -4,-1.8 3,-0.3 -5,-0.2 -2,-0.2 0.910 121.0 30.4 -57.7 -43.6 -7.5 -6.0 5.3 20 24 A T H < S+ 0 0 35 -4,-2.4 2,-0.9 1,-0.3 -2,-0.2 0.969 134.9 28.3 -76.7 -61.9 -9.2 -2.7 5.1 21 25 A Y S < S+ 0 0 17 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.1 -0.776 84.6 166.1-107.7 87.1 -10.7 -2.9 1.6 22 26 A T - 0 0 42 -2,-0.9 6,-0.2 -3,-0.3 -3,-0.1 0.174 52.2 -82.5 -82.9-159.8 -11.2 -6.6 1.0 23 27 A K S S+ 0 0 108 4,-0.1 5,-0.1 41,-0.1 -1,-0.0 0.973 123.3 2.8 -70.2 -59.6 -13.2 -8.4 -1.8 24 28 A T S S+ 0 0 137 3,-0.1 -1,-0.0 2,-0.0 -3,-0.0 0.730 125.6 69.1-100.6 -30.2 -16.6 -8.2 -0.1 25 29 A G S S- 0 0 43 1,-0.2 -4,-0.1 -7,-0.1 -6,-0.1 0.980 116.0 -4.7 -52.3 -79.1 -15.7 -6.2 3.0 26 30 A K S S- 0 0 123 -8,-0.2 -1,-0.2 -6,-0.1 2,-0.0 -0.988 78.2-115.3-124.8 130.5 -14.8 -2.8 1.6 27 31 A P - 0 0 104 0, 0.0 -4,-0.1 0, 0.0 3,-0.1 -0.342 35.9-106.8 -60.6 137.3 -14.7 -1.9 -2.1 28 32 A K - 0 0 31 -6,-0.2 -10,-0.0 -5,-0.1 7,-0.0 -0.605 51.9-101.4 -69.0 110.0 -11.3 -0.9 -3.5 29 33 A P - 0 0 12 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.181 14.0-132.9 -35.8 147.6 -11.7 2.9 -3.9 30 34 A S S S+ 0 0 112 1,-0.2 2,-0.3 -3,-0.1 -2,-0.1 0.793 95.7 26.5 -74.4 -28.5 -12.2 4.4 -7.4 31 35 A T S > S- 0 0 79 1,-0.1 4,-1.3 0, 0.0 3,-0.5 -0.988 74.5-131.3-137.5 143.7 -9.5 6.9 -6.7 32 36 A W H > S+ 0 0 22 -2,-0.3 4,-3.2 1,-0.2 5,-0.3 0.715 102.4 72.2 -68.6 -17.4 -6.5 6.7 -4.4 33 37 A D H > S+ 0 0 98 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.950 104.5 35.3 -60.7 -51.3 -7.5 10.2 -3.0 34 38 A L H > S+ 0 0 80 -3,-0.5 4,-1.7 2,-0.2 5,-0.2 0.796 117.5 57.0 -75.1 -25.7 -10.5 8.8 -1.1 35 39 A A H X S+ 0 0 0 -4,-1.3 4,-2.9 2,-0.2 -2,-0.2 0.970 110.9 39.7 -66.9 -53.3 -8.5 5.7 -0.4 36 40 A S H X S+ 0 0 19 -4,-3.2 4,-2.5 1,-0.2 -2,-0.2 0.816 111.5 59.3 -68.4 -31.3 -5.6 7.4 1.3 37 41 A K H < S+ 0 0 151 -4,-1.7 -1,-0.2 -5,-0.3 -2,-0.2 0.914 117.4 31.3 -63.0 -43.6 -8.0 9.9 3.0 38 42 A E H < S+ 0 0 153 -4,-1.7 -2,-0.2 1,-0.1 -1,-0.2 0.829 119.4 56.6 -80.8 -34.3 -9.8 7.0 4.8 39 43 A L H >< S+ 0 0 3 -4,-2.9 3,-2.0 -5,-0.2 2,-0.6 0.845 73.9 109.9 -65.9 -39.3 -6.6 4.9 4.9 40 44 A G T 3< S+ 0 0 40 -4,-2.5 3,-0.1 1,-0.2 -1,-0.1 -0.212 71.5 49.5 -55.1 96.9 -4.5 7.4 6.8 41 45 A E T 3 S+ 0 0 170 -2,-0.6 2,-0.6 1,-0.4 -1,-0.2 -0.149 79.7 93.9 167.4 -46.4 -4.1 5.8 10.2 42 46 A S S X S- 0 0 22 -3,-2.0 3,-2.2 1,-0.2 4,-0.5 -0.600 74.4-140.3 -70.8 116.4 -3.0 2.2 9.4 43 47 A L T 3 S+ 0 0 115 -2,-0.6 4,-0.4 1,-0.3 -1,-0.2 0.541 91.3 75.9 -67.3 -5.6 0.7 2.6 9.6 44 48 A E T 3 S+ 0 0 16 1,-0.2 -1,-0.3 2,-0.2 -31,-0.1 0.784 95.2 51.5 -79.0 -17.5 1.5 0.4 6.6 45 49 A Y S X S+ 0 0 55 -3,-2.2 3,-0.5 1,-0.2 -1,-0.2 0.679 106.1 54.9 -86.5 -13.9 0.4 3.2 4.4 46 50 A K G > S+ 0 0 152 -4,-0.5 3,-1.0 1,-0.2 -2,-0.2 0.549 93.1 72.3 -86.4 -8.9 2.8 5.3 6.5 47 51 A A G 3 S+ 0 0 38 -4,-0.4 -1,-0.2 1,-0.3 -2,-0.2 0.552 102.4 42.1 -80.2 -6.0 5.3 2.6 5.4 48 52 A L G X S+ 0 0 3 -3,-0.5 3,-0.6 -5,-0.1 7,-0.3 -0.041 75.1 113.8-129.8 28.3 5.2 4.2 2.0 49 53 A G T < S+ 0 0 51 -3,-1.0 3,-0.3 1,-0.2 -2,-0.1 0.726 89.4 39.9 -69.2 -18.4 5.2 7.8 3.0 50 54 A D T 3 S+ 0 0 164 1,-0.2 -1,-0.2 -4,-0.2 -2,-0.1 0.306 118.5 48.8-111.2 3.3 8.6 8.1 1.3 51 55 A E S <> S+ 0 0 50 -3,-0.6 4,-2.2 1,-0.1 -1,-0.2 -0.389 70.9 148.3-139.0 49.6 7.5 5.8 -1.5 52 56 A D H > + 0 0 57 -3,-0.3 4,-2.5 1,-0.2 5,-0.3 0.914 68.3 50.1 -57.5 -51.0 4.3 7.6 -2.3 53 57 A N H > S+ 0 0 97 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.831 110.9 52.5 -67.2 -30.5 4.1 7.0 -6.0 54 58 A I H > S+ 0 0 42 2,-0.2 4,-3.0 3,-0.2 -1,-0.2 0.973 110.2 46.9 -62.2 -52.1 4.7 3.3 -5.4 55 59 A R H X S+ 0 0 12 -4,-2.2 4,-2.6 -7,-0.3 -2,-0.2 0.902 112.8 47.0 -63.1 -49.1 1.9 3.1 -2.8 56 60 A R H X S+ 0 0 118 -4,-2.5 4,-1.9 1,-0.2 -1,-0.2 0.920 115.3 49.1 -55.0 -42.6 -0.7 4.9 -5.0 57 61 A Q H X S+ 0 0 124 -4,-1.7 4,-2.1 -5,-0.3 -2,-0.2 0.926 112.1 44.7 -68.3 -46.9 0.3 2.7 -7.9 58 62 A I H X S+ 0 0 18 -4,-3.0 4,-1.4 1,-0.2 -1,-0.2 0.926 109.5 58.1 -64.3 -42.3 0.2 -0.6 -6.1 59 63 A F H >X S+ 0 0 0 -4,-2.6 3,-0.6 -5,-0.2 4,-0.5 0.925 110.5 41.7 -50.8 -51.1 -3.1 0.3 -4.5 60 64 A E H 3< S+ 0 0 90 -4,-1.9 3,-0.3 1,-0.2 -1,-0.2 0.905 118.7 45.8 -64.7 -40.0 -4.8 0.8 -7.9 61 65 A D H 3< S+ 0 0 117 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.563 90.1 90.6 -80.6 -8.9 -3.1 -2.3 -9.3 62 66 A F H << - 0 0 19 -4,-1.4 -1,-0.2 -3,-0.6 -2,-0.1 0.936 65.2-170.5 -56.6 -55.7 -3.9 -4.4 -6.3 63 67 A K < - 0 0 113 -4,-0.5 -40,-0.1 -3,-0.3 -2,-0.1 0.894 22.0-114.1 58.7 107.5 -7.3 -5.8 -7.5 64 68 A P 0 0 46 0, 0.0 -42,-0.1 0, 0.0 -41,-0.1 0.179 360.0 360.0 -56.0-177.0 -9.3 -7.7 -4.9 65 69 A E 0 0 175 0, 0.0 -43,-0.0 0, 0.0 0, 0.0 0.882 360.0 360.0 75.8 360.0 -10.1 -11.4 -4.8