==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 02-MAR-09 2KFY . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.H.T.ALLAIN,C.DOMINGUEZ . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7115.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 58.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 20.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 135 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 170.0 -16.2 -15.5 2.0 2 2 A M + 0 0 185 4,-0.0 4,-0.1 3,-0.0 0, 0.0 0.122 360.0 49.8-144.6 15.6 -17.3 -17.9 4.8 3 3 A L S S+ 0 0 147 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.090 111.1 34.8-143.7 18.0 -16.5 -21.3 3.1 4 4 A G S S- 0 0 43 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.907 93.7 -56.2-160.2-178.4 -13.0 -20.8 1.9 5 5 A P - 0 0 128 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.142 46.8-171.2 -70.0 165.4 -9.6 -19.1 2.6 6 6 A E - 0 0 92 -4,-0.1 3,-0.1 1,-0.0 -4,-0.0 -0.865 27.0-169.2-147.3 176.2 -9.1 -15.4 3.2 7 7 A G S S+ 0 0 44 1,-0.3 2,-0.3 -2,-0.3 -1,-0.0 0.188 74.4 18.1-157.6 13.1 -6.4 -12.7 3.6 8 8 A G - 0 0 13 81,-0.1 -1,-0.3 5,-0.0 81,-0.2 -0.964 50.1-143.1-173.3 178.3 -8.3 -9.6 4.8 9 9 A E S S+ 0 0 183 79,-0.8 2,-0.3 -2,-0.3 80,-0.2 0.128 76.8 52.6-145.4 16.0 -11.5 -8.3 6.4 10 10 A G S S- 0 0 19 78,-1.3 2,-1.0 2,-0.2 78,-0.4 -0.950 86.6-100.7-151.6 168.3 -12.1 -5.0 4.6 11 11 A F S S+ 0 0 98 -2,-0.3 50,-1.6 50,-0.1 2,-0.3 -0.294 88.8 102.8 -87.9 48.3 -12.3 -3.3 1.2 12 12 A V E -A 60 0A 8 -2,-1.0 76,-1.8 76,-0.4 2,-0.3 -0.940 50.4-165.8-131.9 150.5 -8.8 -2.0 1.5 13 13 A V E -AB 59 87A 0 46,-1.9 46,-2.7 -2,-0.3 74,-0.2 -0.955 18.4-120.4-137.8 157.8 -5.5 -3.2 -0.0 14 14 A K E -AB 58 86A 49 72,-3.0 72,-1.1 -2,-0.3 2,-0.3 -0.521 24.6-156.7 -89.3 161.1 -1.7 -2.7 0.5 15 15 A L E +AB 57 85A 12 42,-2.6 42,-2.7 70,-0.2 2,-0.3 -0.989 15.1 168.4-141.0 147.3 0.6 -1.3 -2.2 16 16 A R E +AB 56 84A 116 68,-1.7 68,-2.2 -2,-0.3 2,-0.3 -0.976 35.8 49.5-154.1 147.2 4.4 -1.5 -2.8 17 17 A G E + B 0 83A 30 38,-1.2 66,-0.2 -2,-0.3 38,-0.1 -0.816 45.3 100.5 127.6-163.2 6.7 -0.6 -5.7 18 18 A L S S- 0 0 24 64,-1.6 -1,-0.2 -2,-0.3 4,-0.1 0.123 82.9 -39.3 66.6 174.3 7.6 2.2 -8.1 19 19 A P S S- 0 0 89 0, 0.0 -2,-0.1 0, 0.0 36,-0.1 0.119 83.0 -74.5 -51.6 177.7 10.6 4.6 -7.6 20 20 A W S S+ 0 0 233 34,-0.0 33,-0.9 32,-0.0 2,-0.3 0.695 121.9 21.5 -54.2 -18.2 11.6 5.8 -4.2 21 21 A S + 0 0 70 31,-0.1 2,-0.2 34,-0.1 -1,-0.0 -0.967 67.0 168.3-147.6 160.2 8.6 8.1 -4.4 22 22 A C - 0 0 46 -2,-0.3 2,-0.3 -4,-0.1 -4,-0.0 -0.856 24.3-115.7-155.5-174.3 5.3 8.3 -6.4 23 23 A S >> - 0 0 64 -2,-0.2 4,-1.5 1,-0.0 3,-1.2 -0.897 30.5-105.6-136.2 164.3 1.9 10.2 -6.5 24 24 A V H 3> S+ 0 0 39 -2,-0.3 4,-1.3 1,-0.3 5,-0.1 0.670 116.7 60.8 -65.3 -17.1 -1.8 9.4 -6.0 25 25 A E H 3> S+ 0 0 145 2,-0.2 4,-0.8 1,-0.1 -1,-0.3 0.755 102.9 49.6 -81.8 -25.7 -2.3 9.7 -9.8 26 26 A D H <> S+ 0 0 66 -3,-1.2 4,-1.0 2,-0.2 -2,-0.2 0.874 110.7 48.9 -79.4 -39.2 0.1 6.8 -10.5 27 27 A V H X S+ 0 0 9 -4,-1.5 4,-1.2 1,-0.2 3,-0.4 0.893 111.6 48.3 -69.0 -39.4 -1.4 4.4 -8.0 28 28 A Q H < S+ 0 0 75 -4,-1.3 6,-0.2 1,-0.2 -1,-0.2 0.796 107.9 56.7 -71.1 -26.1 -5.0 5.1 -9.3 29 29 A N H >< S+ 0 0 95 -4,-0.8 3,-0.6 1,-0.2 -1,-0.2 0.769 105.4 52.1 -70.1 -26.3 -3.7 4.5 -12.8 30 30 A F H 3< S+ 0 0 18 -4,-1.0 2,-0.3 -3,-0.4 -2,-0.2 0.775 106.5 51.0 -83.6 -27.9 -2.5 1.1 -11.8 31 31 A L T >< S+ 0 0 0 -4,-1.2 3,-2.6 1,-0.1 -1,-0.2 -0.401 72.9 159.6-100.7 52.2 -5.8 -0.1 -10.3 32 32 A S T < + 0 0 90 -3,-0.6 -1,-0.1 -2,-0.3 -3,-0.1 0.287 69.6 50.4 -62.4 8.8 -7.5 1.0 -13.6 33 33 A D T 3 S+ 0 0 96 33,-0.1 -1,-0.3 36,-0.1 2,-0.2 0.265 107.0 62.3-124.8 5.1 -10.5 -1.3 -12.8 34 34 A C S < S- 0 0 19 -3,-2.6 2,-0.3 -6,-0.2 -3,-0.1 -0.544 72.8-118.5-126.1-177.0 -11.2 -0.0 -9.2 35 35 A T - 0 0 77 -2,-0.2 27,-0.5 28,-0.1 2,-0.3 -0.979 14.7-138.6-131.0 142.4 -12.1 3.0 -7.1 36 36 A I > - 0 0 13 -2,-0.3 2,-2.9 25,-0.2 3,-1.2 -0.241 51.0-103.4 -99.1 43.2 -9.9 4.6 -4.4 37 37 A H T 3 S- 0 0 95 -2,-0.3 24,-0.1 1,-0.3 -1,-0.1 -0.141 108.2 -4.5 63.1 -42.6 -12.9 5.2 -2.0 38 38 A D T 3 S- 0 0 116 -2,-2.9 2,-0.5 1,-0.3 -1,-0.3 0.262 102.1-120.0-148.6 -2.3 -12.9 8.9 -3.0 39 39 A G S X S+ 0 0 17 -3,-1.2 3,-1.9 1,-0.2 4,-0.5 -0.854 96.3 13.8 98.3-127.1 -9.8 9.2 -5.3 40 40 A A T 3 S+ 0 0 77 -2,-0.5 -1,-0.2 1,-0.3 -16,-0.1 0.360 128.3 62.8 -63.5 5.9 -7.1 11.6 -4.1 41 41 A A T 3 S+ 0 0 72 -5,-0.2 -1,-0.3 1,-0.1 -2,-0.1 0.094 103.9 43.2-119.1 16.7 -9.1 11.4 -0.8 42 42 A G S < S+ 0 0 1 -3,-1.9 18,-1.8 18,-0.1 -2,-0.2 0.268 86.1 111.7-140.5 3.1 -8.6 7.7 -0.1 43 43 A V E -C 59 0A 27 -4,-0.5 2,-0.3 16,-0.2 16,-0.2 -0.358 42.8-174.2 -73.6 160.1 -4.8 7.3 -1.0 44 44 A H E -C 58 0A 46 14,-1.2 14,-0.9 -2,-0.1 2,-0.3 -0.975 6.9-176.4-151.7 159.3 -2.2 6.6 1.7 45 45 A F E -C 57 0A 45 -2,-0.3 2,-0.4 12,-0.2 12,-0.2 -0.921 17.7-133.2-149.2 169.9 1.6 6.3 1.9 46 46 A I E + 0 0 10 10,-1.3 8,-2.3 -2,-0.3 9,-0.6 -0.997 34.7 144.0-135.1 138.4 4.3 5.4 4.4 47 47 A Y E -C 53 0A 130 -2,-0.4 2,-0.3 6,-0.3 6,-0.2 -0.877 31.8-124.1-157.5-179.1 7.6 7.3 5.1 48 48 A T E >> -C 52 0A 13 4,-1.7 3,-1.6 -2,-0.2 4,-0.6 -0.919 33.0-105.1-139.0 165.3 10.1 8.4 7.7 49 49 A R T 34 S+ 0 0 230 -2,-0.3 -1,-0.0 1,-0.3 52,-0.0 0.691 107.7 81.0 -63.5 -21.0 11.7 11.6 9.0 50 50 A E T 34 S- 0 0 124 2,-0.1 -1,-0.3 1,-0.1 51,-0.0 0.800 115.8-102.0 -55.7 -32.6 14.9 10.7 7.1 51 51 A G T <4 S+ 0 0 68 -3,-1.6 2,-0.3 1,-0.4 -2,-0.1 0.712 84.9 79.2 119.0 30.8 13.2 12.1 4.0 52 52 A R E < S- C 0 48A 124 -4,-0.6 -4,-1.7 -31,-0.0 -1,-0.4 -0.967 79.0 -88.2-156.0 163.6 11.9 9.2 1.8 53 53 A Q E - C 0 47A 52 -33,-0.9 -6,-0.3 -2,-0.3 4,-0.1 -0.444 32.3-125.8 -73.8 153.6 9.1 6.7 1.5 54 54 A S E - 0 0 49 -8,-2.3 -7,-0.2 2,-0.3 -1,-0.1 0.705 55.3-100.7 -71.2 -19.6 9.4 3.4 3.4 55 55 A G E S+ 0 0 40 -9,-0.6 -38,-1.2 1,-0.4 2,-0.3 0.335 93.9 77.1 115.7 1.0 8.8 1.6 0.1 56 56 A E E +A 16 0A 79 -10,-0.3 -10,-1.3 -40,-0.2 -1,-0.4 -0.851 45.6 167.4-140.9 169.0 5.1 0.9 0.7 57 57 A A E -AC 15 45A 9 -42,-2.7 -42,-2.6 -2,-0.3 2,-0.3 -0.886 23.2-120.7-162.6-176.7 1.6 2.4 0.8 58 58 A F E -AC 14 44A 7 -14,-0.9 -14,-1.2 -44,-0.3 2,-0.3 -0.930 8.0-152.2-139.2 166.0 -2.1 1.5 1.0 59 59 A V E -AC 13 43A 1 -46,-2.7 -46,-1.9 -2,-0.3 -16,-0.2 -0.909 10.2-149.9-143.7 110.7 -5.3 2.1 -1.1 60 60 A E E -A 12 0A 16 -18,-1.8 2,-0.2 -2,-0.3 -48,-0.2 -0.477 21.9-164.9 -72.1 151.9 -8.8 2.3 0.3 61 61 A L - 0 0 3 -50,-1.6 -25,-0.2 -25,-0.3 -50,-0.1 -0.718 26.9-119.4-131.4-176.8 -11.6 1.2 -2.0 62 62 A G S S- 0 0 37 -27,-0.5 2,-0.3 -2,-0.2 -51,-0.1 0.790 82.3 -0.1 -97.4 -33.1 -15.4 1.4 -2.4 63 63 A S S >> S- 0 0 61 -28,-0.2 4,-1.4 -52,-0.1 3,-0.9 -0.927 73.7 -94.4-151.8 171.3 -16.5 -2.3 -2.3 64 64 A E H 3> S+ 0 0 87 -2,-0.3 4,-2.0 1,-0.3 5,-0.2 0.784 120.3 62.2 -60.1 -28.9 -15.5 -6.0 -2.0 65 65 A D H 3> S+ 0 0 101 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.821 102.2 50.6 -69.8 -28.6 -15.5 -6.1 -5.8 66 66 A D H <> S+ 0 0 18 -3,-0.9 4,-1.6 2,-0.2 -2,-0.2 0.862 108.6 50.2 -76.8 -37.1 -12.7 -3.4 -5.9 67 67 A V H X S+ 0 0 2 -4,-1.4 4,-1.3 2,-0.2 -2,-0.2 0.902 111.5 49.1 -69.2 -39.4 -10.4 -5.3 -3.5 68 68 A K H X S+ 0 0 69 -4,-2.0 4,-0.7 1,-0.2 3,-0.5 0.937 112.5 47.7 -61.5 -46.1 -10.8 -8.5 -5.5 69 69 A M H < S+ 0 0 51 -4,-1.7 3,-0.2 1,-0.2 -1,-0.2 0.761 107.0 57.1 -68.2 -25.8 -10.0 -6.7 -8.7 70 70 A A H >< S+ 0 0 0 -4,-1.6 3,-0.9 1,-0.2 -1,-0.2 0.809 104.2 52.9 -72.2 -30.3 -6.9 -5.0 -7.1 71 71 A L H >< S+ 0 0 48 -4,-1.3 3,-1.4 -3,-0.5 -1,-0.2 0.635 89.3 78.8 -79.2 -16.3 -5.5 -8.4 -6.2 72 72 A K T 3< S+ 0 0 163 -4,-0.7 -1,-0.2 1,-0.3 -2,-0.1 0.544 104.1 35.3 -68.0 -6.9 -5.8 -9.5 -9.9 73 73 A K T X S+ 0 0 22 -3,-0.9 3,-2.2 -4,-0.1 -1,-0.3 -0.032 74.5 147.4-135.1 28.3 -2.6 -7.5 -10.6 74 74 A D T < S+ 0 0 74 -3,-1.4 11,-2.1 1,-0.3 -2,-0.1 0.495 84.4 17.0 -44.8 -14.1 -0.8 -8.2 -7.3 75 75 A R T 3 S+ 0 0 148 9,-0.3 -1,-0.3 -4,-0.1 9,-0.1 0.144 95.5 126.2-148.0 22.0 2.6 -8.1 -9.0 76 76 A E < - 0 0 103 -3,-2.2 7,-3.3 6,-0.1 2,-0.3 0.166 47.3-126.5 -71.1-166.3 2.1 -6.4 -12.4 77 77 A S B -D 82 0B 67 5,-0.3 5,-0.2 1,-0.1 -1,-0.1 -0.978 14.0-132.6-146.0 153.4 3.9 -3.4 -13.9 78 78 A M S S- 0 0 76 3,-1.6 4,-0.1 -2,-0.3 -1,-0.1 0.734 70.3 -89.4 -77.3 -24.3 3.2 0.0 -15.4 79 79 A G S S+ 0 0 53 2,-0.9 3,-0.1 -3,-0.0 -2,-0.0 0.162 119.3 37.4 136.6 -16.9 5.6 -0.7 -18.3 80 80 A H S S+ 0 0 198 1,-0.5 2,-0.3 0, 0.0 -3,-0.0 0.354 123.5 22.3-139.2 -5.7 9.0 0.5 -17.1 81 81 A R S S- 0 0 166 -62,-0.0 -3,-1.6 -63,-0.0 -2,-0.9 -0.949 79.3-115.4-155.5 163.5 8.8 -0.5 -13.4 82 82 A Y B -D 77 0B 104 -2,-0.3 -64,-1.6 -5,-0.2 -5,-0.3 -0.685 20.3-157.6-114.6 163.8 6.9 -3.0 -11.4 83 83 A I E -B 17 0A 1 -7,-3.3 2,-0.3 -2,-0.2 -66,-0.2 -0.811 2.8-149.0-136.2 166.4 4.2 -2.9 -8.6 84 84 A E E -B 16 0A 50 -68,-2.2 -68,-1.7 -2,-0.3 2,-0.3 -0.984 9.5-175.8-142.9 147.6 2.8 -5.0 -5.9 85 85 A V E +B 15 0A 8 -11,-2.1 2,-0.3 -2,-0.3 -70,-0.2 -0.974 3.6 175.7-143.3 153.3 -0.6 -5.4 -4.1 86 86 A F E -B 14 0A 126 -72,-1.1 -72,-3.0 -2,-0.3 2,-0.1 -0.982 36.0 -92.3-157.0 156.0 -2.0 -7.4 -1.2 87 87 A K E +B 13 0A 31 -2,-0.3 2,-0.2 -74,-0.2 -74,-0.2 -0.343 45.0 178.4 -75.1 153.1 -5.2 -7.7 0.7 88 88 A S - 0 0 0 -76,-1.8 -78,-1.3 -78,-0.4 -79,-0.8 -0.774 34.4-147.3-142.7-175.7 -5.9 -5.6 3.8 89 89 A H - 0 0 58 -81,-0.2 2,-0.6 -2,-0.2 -78,-0.1 0.203 44.8-117.7-146.9 9.6 -8.4 -4.9 6.6 90 90 A R S > S+ 0 0 133 1,-0.2 4,-2.1 -80,-0.1 5,-0.2 0.053 100.2 87.7 74.9 -25.4 -7.7 -1.2 7.3 91 91 A T H > S+ 0 0 101 -2,-0.6 4,-1.4 2,-0.2 -1,-0.2 0.895 94.2 43.5 -68.8 -39.0 -6.7 -1.8 11.0 92 92 A E H > S+ 0 0 70 2,-0.2 4,-0.9 1,-0.2 5,-0.2 0.867 109.5 58.2 -68.9 -37.5 -3.1 -2.5 9.8 93 93 A M H >> S+ 0 0 4 1,-0.2 4,-1.9 2,-0.2 3,-0.8 0.929 110.9 41.4 -58.3 -46.7 -3.4 0.6 7.5 94 94 A D H 3< S+ 0 0 76 -4,-2.1 4,-0.5 1,-0.2 -1,-0.2 0.800 106.6 65.4 -69.0 -30.0 -4.1 2.8 10.5 95 95 A W H 3< S+ 0 0 174 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.670 116.4 25.4 -68.9 -19.3 -1.5 0.9 12.6 96 96 A V H XX S+ 0 0 21 -4,-0.9 4,-1.1 -3,-0.8 3,-0.7 0.583 107.2 71.6-120.0 -20.8 1.3 2.2 10.3 97 97 A L T 3< S+ 0 0 44 -4,-1.9 -2,-0.1 -5,-0.2 -3,-0.1 0.556 116.0 29.3 -68.8 -6.5 -0.2 5.5 8.9 98 98 A K T 34 S+ 0 0 155 -4,-0.5 -1,-0.2 -5,-0.1 -2,-0.1 0.185 127.5 39.7-136.9 12.2 0.3 6.8 12.5 99 99 A H T <4 S+ 0 0 136 -3,-0.7 -2,-0.2 2,-0.0 -3,-0.1 0.243 74.6 139.9-148.1 9.5 3.3 4.9 13.8 100 100 A S < + 0 0 44 -4,-1.1 -52,-0.0 -52,-0.0 -3,-0.0 -0.184 22.0 138.2 -58.5 152.8 5.8 4.6 10.8 101 101 A G 0 0 41 -53,-0.1 -53,-0.1 -52,-0.0 -2,-0.0 -0.969 360.0 360.0-179.9 174.4 9.5 5.1 11.5 102 102 A P 0 0 173 0, 0.0 -48,-0.0 0, 0.0 -55,-0.0 -0.439 360.0 360.0 -69.5 360.0 13.0 3.8 10.8