==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 02-MAR-09 2KG0 . COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.H.T.ALLAIN,C.DOMINGUEZ . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5770.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 53.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A N 0 0 191 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 150.9 1.3 6.7 -21.0 2 104 A S + 0 0 91 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.239 360.0 42.8-144.8 8.0 2.1 4.8 -17.7 3 105 A A - 0 0 17 1,-0.1 -1,-0.1 4,-0.0 4,-0.0 -0.953 37.8-177.1-152.1 168.4 -1.1 2.7 -17.1 4 106 A D S S+ 0 0 156 -2,-0.3 3,-0.1 -3,-0.1 -1,-0.1 0.268 91.2 31.1-150.9 4.8 -3.7 0.5 -18.7 5 107 A S S S+ 0 0 94 1,-0.2 2,-0.3 79,-0.1 -2,-0.0 0.244 113.9 48.9-149.9 7.9 -6.1 -0.4 -15.9 6 108 A A + 0 0 10 79,-0.1 -1,-0.2 1,-0.1 79,-0.1 -0.985 31.9 166.9-152.9 157.1 -6.0 2.7 -13.6 7 109 A N + 0 0 118 -2,-0.3 53,-0.3 -3,-0.1 2,-0.3 0.015 62.5 82.8-161.4 29.8 -6.3 6.5 -13.7 8 110 A D S S- 0 0 61 76,-0.3 76,-0.2 2,-0.2 50,-0.1 -0.865 89.1-102.9-136.3 165.5 -6.8 7.4 -10.0 9 111 A G S S+ 0 0 0 -2,-0.3 48,-2.8 48,-0.3 76,-0.1 0.433 78.6 127.7 -72.6 1.3 -4.6 7.9 -7.0 10 112 A F E +A 56 0A 6 46,-0.3 74,-1.1 74,-0.1 2,-0.3 -0.283 30.8 162.5 -61.6 144.5 -5.6 4.4 -5.7 11 113 A V E -AB 55 83A 0 44,-2.0 44,-1.8 72,-0.3 2,-0.3 -0.889 27.8-126.9-151.8 176.5 -2.8 2.0 -4.9 12 114 A R E -A 54 0A 44 70,-3.2 2,-0.3 -2,-0.3 42,-0.3 -0.974 11.8-153.6-136.6 147.5 -2.2 -1.2 -3.0 13 115 A L E +A 53 0A 1 40,-1.9 40,-2.2 -2,-0.3 2,-0.3 -0.917 16.5 167.6-121.1 148.3 0.3 -2.3 -0.2 14 116 A R E +AC 52 80A 105 66,-1.0 66,-2.3 -2,-0.3 38,-0.2 -0.965 55.4 55.3-152.5 160.3 1.6 -5.7 0.7 15 117 A G S S+ 0 0 26 36,-1.1 37,-0.1 -2,-0.3 -1,-0.0 0.467 71.5 166.6 90.7 3.7 4.4 -7.1 2.9 16 118 A L - 0 0 7 35,-1.1 2,-0.4 1,-0.2 -1,-0.2 -0.203 50.5-116.2 -55.6 140.6 2.9 -5.2 5.8 17 119 A P - 0 0 35 0, 0.0 -1,-0.2 0, 0.0 62,-0.0 0.196 48.0-109.4 -58.8 16.2 4.2 -6.1 9.3 18 120 A F S S+ 0 0 151 -2,-0.4 31,-0.4 1,-0.1 -2,-0.1 0.545 116.8 61.8 57.0 9.4 0.7 -7.4 10.1 19 121 A G S S+ 0 0 61 29,-0.1 -1,-0.1 32,-0.1 5,-0.1 0.363 71.0 116.4-140.0 -3.2 0.6 -4.3 12.4 20 122 A C + 0 0 6 4,-0.1 2,-0.2 3,-0.1 29,-0.1 -0.311 38.4 169.1 -63.6 153.2 1.0 -1.3 10.0 21 123 A T >> - 0 0 54 32,-0.0 4,-2.7 -2,-0.0 3,-1.6 -0.809 54.3 -60.9-150.5-169.2 -1.9 1.1 9.7 22 124 A K H 3> S+ 0 0 94 1,-0.3 4,-1.3 -2,-0.2 5,-0.1 0.815 132.7 53.2 -51.7 -33.7 -2.9 4.5 8.3 23 125 A E H 3> S+ 0 0 137 2,-0.2 4,-0.8 1,-0.2 -1,-0.3 0.708 112.9 41.6 -76.8 -22.7 -0.2 6.1 10.5 24 126 A E H <> S+ 0 0 72 -3,-1.6 4,-1.6 2,-0.2 -2,-0.2 0.804 112.8 52.4 -94.7 -33.9 2.6 3.7 9.2 25 127 A I H X S+ 0 0 1 -4,-2.7 4,-0.7 2,-0.2 -2,-0.2 0.840 111.9 48.5 -64.3 -34.6 1.5 3.9 5.6 26 128 A V H < S+ 0 0 52 -4,-1.3 6,-0.3 -5,-0.3 -1,-0.2 0.849 111.4 46.9 -81.3 -34.0 1.6 7.7 5.8 27 129 A Q H >< S+ 0 0 122 -4,-0.8 3,-1.0 1,-0.2 -1,-0.2 0.777 109.5 56.1 -72.3 -26.6 5.0 7.8 7.4 28 130 A F H 3< S+ 0 0 10 -4,-1.6 -2,-0.2 1,-0.3 -1,-0.2 0.733 117.0 35.7 -72.1 -23.1 6.2 5.3 4.8 29 131 A F T >< S+ 0 0 1 -4,-0.7 3,-1.8 1,-0.1 -1,-0.3 -0.158 78.8 127.3-118.1 32.9 4.9 7.9 2.2 30 132 A S T < S+ 0 0 79 -3,-1.0 -1,-0.1 1,-0.3 -2,-0.1 0.605 71.4 59.6 -68.3 -11.7 6.0 10.9 4.3 31 133 A G T 3 S+ 0 0 72 -3,-0.2 -1,-0.3 -4,-0.1 2,-0.2 0.158 116.8 34.9 -95.6 15.2 7.9 12.1 1.2 32 134 A L S < S- 0 0 41 -3,-1.8 2,-0.3 -6,-0.3 -3,-0.1 -0.558 86.1-112.5-144.1-162.3 4.5 12.1 -0.6 33 135 A E - 0 0 119 -2,-0.2 25,-0.8 25,-0.0 2,-0.3 -0.972 14.9-158.7-147.9 162.3 0.9 12.9 0.3 34 136 A I E -D 57 0A 34 -2,-0.3 23,-0.2 23,-0.2 3,-0.1 -0.981 28.4-105.2-141.4 148.0 -2.4 11.0 0.7 35 137 A V E > - 0 0 49 21,-2.0 3,-1.6 -2,-0.3 21,-0.2 -0.404 54.2 -78.1 -73.8 153.7 -6.1 12.2 0.7 36 138 A P E 3 S- 0 0 123 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.166 114.3 -3.7 -48.9 139.4 -8.0 12.4 4.0 37 139 A N E 3 S+ 0 0 141 1,-0.2 -2,-0.1 -3,-0.1 -15,-0.0 0.790 93.0 144.1 40.6 37.6 -9.3 9.0 5.3 38 140 A G E < + 0 0 4 -3,-1.6 18,-2.1 18,-0.1 2,-0.4 -0.006 38.5 87.6 -94.9 27.7 -7.8 7.6 2.1 39 141 A I E -D 55 0A 16 16,-0.2 2,-0.3 -5,-0.1 16,-0.2 -0.974 50.0-172.7-133.4 145.3 -6.6 4.3 3.5 40 142 A T E -D 54 0A 24 14,-2.8 14,-2.2 -2,-0.4 -2,-0.0 -0.984 6.4-163.6-137.8 144.8 -8.3 0.9 4.0 41 143 A L - 0 0 26 -2,-0.3 12,-0.2 12,-0.2 -2,-0.0 -0.846 11.8-149.8-137.0 93.7 -7.1 -2.3 5.9 42 144 A P - 0 0 39 0, 0.0 8,-1.0 0, 0.0 9,-0.3 -0.226 22.9-166.2 -54.5 150.8 -8.8 -5.6 5.2 43 145 A V B -E 49 0B 78 6,-0.3 6,-0.3 7,-0.1 -2,-0.0 -0.918 17.9-117.3-141.6 166.7 -8.8 -8.0 8.1 44 146 A D > - 0 0 65 4,-2.8 3,-2.5 -2,-0.3 6,-0.0 -0.345 49.4 -87.6 -92.3 177.0 -9.5 -11.7 9.1 45 147 A P T 3 S+ 0 0 146 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 0.706 130.6 62.5 -58.7 -19.2 -12.2 -13.0 11.5 46 148 A E T 3 S- 0 0 143 2,-0.2 3,-0.1 3,-0.0 0, 0.0 0.515 118.1-115.6 -82.8 -7.6 -9.5 -12.3 14.2 47 149 A G S < S+ 0 0 55 -3,-2.5 2,-0.3 1,-0.3 -1,-0.0 0.602 76.6 126.1 80.9 13.4 -9.6 -8.6 13.3 48 150 A K - 0 0 106 1,-0.1 -4,-2.8 2,-0.0 -1,-0.3 -0.791 68.3 -93.4-105.6 149.1 -6.0 -8.7 12.2 49 151 A I B -E 43 0B 17 -31,-0.4 -6,-0.3 -2,-0.3 -1,-0.1 -0.213 22.0-128.9 -68.9 149.8 -4.9 -7.5 8.7 50 152 A T - 0 0 54 -8,-1.0 -1,-0.1 2,-0.3 -7,-0.1 0.517 57.2 -94.7 -74.9 -7.3 -4.6 -9.9 5.8 51 153 A G S S+ 0 0 10 1,-0.4 -36,-1.1 -9,-0.3 -35,-1.1 0.355 101.1 70.4 106.7 -0.7 -1.1 -8.7 5.1 52 154 A E E -A 14 0A 38 -38,-0.2 -1,-0.4 -10,-0.2 -2,-0.3 -0.883 55.0-176.4-140.4 170.7 -2.2 -6.2 2.4 53 155 A A E -A 13 0A 0 -40,-2.2 -40,-1.9 -2,-0.3 2,-0.3 -0.883 17.5-126.1-157.2-178.7 -4.0 -2.8 2.2 54 156 A F E +AD 12 40A 15 -14,-2.2 -14,-2.8 -42,-0.3 2,-0.3 -0.976 23.4 176.8-144.0 148.9 -5.4 -0.1 -0.1 55 157 A V E -AD 11 39A 0 -44,-1.8 -44,-2.0 -2,-0.3 2,-0.4 -0.927 26.0-135.2-146.8 165.3 -4.9 3.6 -0.3 56 158 A Q E -A 10 0A 49 -18,-2.1 -21,-2.0 -2,-0.3 -46,-0.3 -0.916 23.9-168.2-128.5 106.0 -5.8 6.7 -2.3 57 159 A F E - D 0 34A 0 -48,-2.8 2,-1.6 -2,-0.4 -48,-0.3 -0.273 50.3 -70.6 -74.7 173.0 -2.9 9.1 -2.9 58 160 A A S > S- 0 0 28 -25,-0.8 4,-1.2 -50,-0.1 3,-0.2 -0.547 99.1 -47.1 -71.2 90.7 -3.4 12.6 -4.3 59 161 A S H >> S- 0 0 80 -2,-1.6 4,-1.5 1,-0.2 3,-0.7 0.232 83.7 -64.0 63.1 170.2 -4.5 11.6 -7.8 60 162 A Q H 3> S+ 0 0 51 -53,-0.3 4,-1.3 1,-0.2 -1,-0.2 0.711 129.9 65.4 -62.0 -22.1 -2.8 9.1 -10.1 61 163 A E H 3> S+ 0 0 132 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.916 102.5 45.0 -68.7 -43.5 0.3 11.3 -10.3 62 164 A L H XX S+ 0 0 7 -4,-1.2 4,-2.1 -3,-0.7 3,-0.5 0.897 108.4 58.2 -67.6 -39.1 1.1 10.8 -6.6 63 165 A A H 3X S+ 0 0 0 -4,-1.5 4,-0.6 1,-0.2 -1,-0.2 0.869 103.4 53.1 -57.2 -37.2 0.5 7.1 -6.8 64 166 A E H 3< S+ 0 0 59 -4,-1.3 -1,-0.2 1,-0.2 3,-0.2 0.795 107.9 50.3 -71.8 -28.9 3.2 6.8 -9.5 65 167 A K H X< S+ 0 0 110 -4,-1.0 3,-1.8 -3,-0.5 -1,-0.2 0.875 104.1 58.3 -73.0 -39.2 5.7 8.6 -7.3 66 168 A A H >< S+ 0 0 0 -4,-2.1 3,-1.7 1,-0.3 -1,-0.2 0.662 87.7 77.2 -63.5 -17.9 4.9 6.2 -4.4 67 169 A L G >< S+ 0 0 54 -4,-0.6 3,-1.4 1,-0.3 -1,-0.3 0.643 77.6 73.6 -67.3 -13.0 5.9 3.3 -6.7 68 170 A G G < S+ 0 0 65 -3,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.616 85.5 66.8 -74.0 -11.7 9.5 4.3 -6.0 69 171 A K G X + 0 0 60 -3,-1.7 3,-2.4 -4,-0.1 10,-0.3 0.354 69.6 133.0 -88.5 0.6 8.9 2.7 -2.5 70 172 A H T < S+ 0 0 81 -3,-1.4 10,-0.2 1,-0.3 3,-0.1 -0.354 84.9 1.0 -54.5 133.2 8.6 -0.7 -4.1 71 173 A K T 3 S+ 0 0 143 8,-1.5 -1,-0.3 1,-0.2 9,-0.2 0.468 105.3 130.9 59.5 5.6 10.7 -3.1 -2.0 72 174 A E < - 0 0 94 -3,-2.4 7,-3.2 7,-0.3 2,-0.2 -0.308 56.6-108.1 -77.0 170.4 11.6 -0.2 0.3 73 175 A R B -F 78 0C 173 5,-0.3 5,-0.2 -3,-0.1 -1,-0.1 -0.671 13.2-153.8-112.6 158.3 11.3 -0.6 4.1 74 176 A I S S- 0 0 31 3,-2.3 4,-0.1 -2,-0.2 -1,-0.1 0.497 80.9 -60.6-102.9 -9.5 8.9 0.7 6.8 75 177 A G S S+ 0 0 72 2,-0.6 3,-0.1 -47,-0.0 -2,-0.1 0.054 126.0 2.3 154.4 -29.1 11.5 0.4 9.6 76 178 A H S S+ 0 0 136 1,-0.3 2,-0.3 0, 0.0 -3,-0.0 0.273 123.9 52.8-157.5 1.0 12.5 -3.3 9.8 77 179 A R S S- 0 0 113 0, 0.0 -3,-2.3 0, 0.0 -2,-0.6 -0.959 78.4-112.1-145.6 153.5 10.6 -5.0 7.0 78 180 A Y B -F 73 0C 134 -2,-0.3 -5,-0.3 -5,-0.2 2,-0.3 -0.653 29.2-158.8 -97.0 153.0 10.1 -4.4 3.2 79 181 A I - 0 0 0 -7,-3.2 -8,-1.5 -10,-0.3 2,-0.3 -0.789 6.5-138.8-127.5 162.2 6.9 -3.2 1.6 80 182 A E B -C 14 0A 43 -66,-2.3 -66,-1.0 -2,-0.3 -10,-0.1 -0.887 0.9-156.6-128.7 160.4 5.3 -3.3 -1.8 81 183 A V + 0 0 3 -2,-0.3 -68,-0.2 -68,-0.2 -11,-0.1 -0.251 21.0 172.4-137.0 40.0 3.4 -0.7 -3.7 82 184 A F - 0 0 67 -71,-0.1 -70,-3.2 1,-0.1 2,-0.1 -0.088 36.8-107.5 -52.7 152.9 1.2 -2.4 -6.4 83 185 A K B +B 11 0A 52 -72,-0.3 -72,-0.3 -16,-0.0 2,-0.3 -0.320 41.6 176.3 -80.1 170.2 -1.3 -0.2 -8.2 84 186 A S - 0 0 9 -74,-1.1 -76,-0.3 -76,-0.2 2,-0.3 -0.922 18.2-144.8-158.0 180.0 -5.1 -0.2 -7.6 85 187 A S > - 0 0 26 -2,-0.3 3,-2.1 -79,-0.1 4,-0.2 -0.902 45.1 -86.5-148.2 170.5 -8.4 1.3 -8.5 86 188 A Q G >> S+ 0 0 70 1,-0.3 3,-1.9 -2,-0.3 4,-1.1 0.789 117.7 72.9 -53.9 -31.8 -11.7 2.1 -6.7 87 189 A E G 34 S+ 0 0 119 1,-0.3 -1,-0.3 2,-0.2 -3,-0.0 0.485 102.3 42.9 -64.7 -2.8 -13.0 -1.5 -7.5 88 190 A E G <4 S+ 0 0 95 -3,-2.1 -1,-0.3 2,-0.0 -2,-0.2 0.301 123.2 34.1-122.1 2.2 -10.5 -2.8 -4.9 89 191 A V T X4 S+ 0 0 0 -3,-1.9 3,-0.7 -4,-0.2 -2,-0.2 0.195 73.4 118.7-142.6 11.6 -11.1 -0.2 -2.1 90 192 A R T 3< + 0 0 153 -4,-1.1 -3,-0.1 1,-0.3 -4,-0.1 0.285 41.4 108.8 -69.0 13.0 -14.9 0.6 -2.5 91 193 A S T 3 0 0 101 1,-0.2 -1,-0.3 -5,-0.1 -4,-0.0 0.477 360.0 360.0 -67.2 -2.0 -15.3 -0.8 1.1 92 194 A Y < 0 0 143 -3,-0.7 -1,-0.2 -52,-0.0 -2,-0.1 0.917 360.0 360.0 -56.7 360.0 -15.9 2.9 1.9