==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 11-MAR-09 2KGG . COMPND 2 MOLECULE: HISTONE DEMETHYLASE JARID1A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.SONG,Z.WANG,D.J.PATEL . 51 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4047.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 7.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 173 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.4 -12.3 5.8 3.4 2 2 A V - 0 0 107 1,-0.0 2,-0.1 0, 0.0 3,-0.0 -0.897 360.0-143.9-108.0 135.5 -9.6 6.7 1.0 3 3 A C - 0 0 20 -2,-0.4 2,-0.6 1,-0.1 26,-0.2 -0.239 34.5 -79.1 -87.4-175.9 -6.1 5.3 1.6 4 4 A A S S+ 0 0 17 24,-2.8 26,-0.3 -2,-0.1 2,-0.2 -0.779 77.1 109.4 -90.6 119.7 -2.7 7.0 0.9 5 5 A A > - 0 0 30 -2,-0.6 3,-0.5 24,-0.1 29,-0.1 -0.623 68.8-122.5 178.3 134.2 -1.7 7.0 -2.8 6 6 A Q T 3 S+ 0 0 175 1,-0.3 2,-0.4 -2,-0.2 28,-0.1 0.808 116.0 25.3 -49.4 -33.9 -1.4 9.8 -5.5 7 7 A N T 3 S- 0 0 118 26,-0.3 2,-0.7 -3,-0.1 -1,-0.3 -0.807 80.4-176.4-133.3 92.1 -3.8 7.6 -7.4 8 8 A C < - 0 0 18 -3,-0.5 -3,-0.1 -2,-0.4 26,-0.0 -0.834 17.5-164.3 -95.4 119.2 -5.8 5.4 -5.3 9 9 A Q - 0 0 109 -2,-0.7 -1,-0.1 21,-0.1 -4,-0.0 0.567 32.6-138.8 -69.1 -10.7 -8.1 3.0 -7.2 10 10 A R + 0 0 168 1,-0.2 2,-0.3 20,-0.0 -2,-0.1 0.827 32.1 179.6 49.4 46.0 -9.9 2.6 -3.8 11 11 A P - 0 0 27 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 -0.565 13.3-160.1 -78.5 132.0 -10.3 -1.3 -4.2 12 12 A C + 0 0 126 -2,-0.3 2,-0.3 3,-0.0 0, 0.0 -0.944 26.7 147.0-116.4 111.0 -12.1 -2.9 -1.4 13 13 A K > - 0 0 153 -2,-0.6 3,-0.5 3,-0.2 0, 0.0 -0.955 48.1-136.2-138.4 156.1 -11.6 -6.7 -1.1 14 14 A D T 3 S+ 0 0 149 -2,-0.3 -1,-0.0 1,-0.2 -2,-0.0 0.515 106.2 52.4 -91.5 -6.6 -11.4 -9.0 1.9 15 15 A K T 3 S+ 0 0 180 2,-0.1 2,-0.7 1,-0.0 -1,-0.2 0.158 84.8 102.1-114.0 16.2 -8.4 -10.8 0.5 16 16 A V < - 0 0 33 -3,-0.5 2,-0.2 -5,-0.0 -3,-0.2 -0.881 59.0-154.0-107.8 106.1 -6.3 -7.7 -0.2 17 17 A D - 0 0 123 -2,-0.7 14,-0.7 1,-0.0 2,-0.2 -0.535 14.5-139.4 -71.8 146.1 -3.5 -7.1 2.4 18 18 A W E -A 30 0A 111 -2,-0.2 2,-0.4 12,-0.1 12,-0.2 -0.648 5.0-136.3-108.9 160.7 -2.4 -3.4 2.8 19 19 A V E -A 29 0A 8 10,-2.6 10,-3.5 -2,-0.2 2,-0.4 -0.960 7.2-154.6-124.3 139.2 1.0 -1.9 3.3 20 20 A Q E -A 28 0A 42 -2,-0.4 2,-1.1 8,-0.2 26,-0.4 -0.870 19.9-129.5-107.0 139.5 2.2 0.8 5.7 21 21 A C >>> - 0 0 0 6,-1.9 5,-2.0 -2,-0.4 3,-1.0 -0.786 21.8-173.8 -91.3 102.0 5.1 3.0 5.0 22 22 A D T 345 + 0 0 101 -2,-1.1 -1,-0.1 24,-0.6 25,-0.1 0.150 63.7 94.1 -83.4 24.7 7.2 2.8 8.2 23 23 A G T 345S- 0 0 44 23,-0.4 -1,-0.3 0, 0.0 24,-0.1 0.466 115.8 -64.2 -95.3 -4.4 9.5 5.4 6.9 24 24 A G T <45S+ 0 0 60 -3,-1.0 -2,-0.1 3,-0.1 23,-0.0 0.263 123.2 71.3 145.1 -20.2 7.8 8.3 8.6 25 25 A C T <5 - 0 0 42 -4,-0.7 -3,-0.1 2,-0.1 3,-0.1 0.826 69.4-156.9 -91.0 -34.1 4.2 8.8 7.3 26 26 A D < + 0 0 93 -5,-2.0 2,-0.1 1,-0.2 -4,-0.1 0.657 43.3 144.9 62.6 21.0 2.7 5.7 8.9 27 27 A E - 0 0 98 -6,-0.3 -6,-1.9 1,-0.0 2,-0.5 -0.458 49.3-119.4 -88.1 159.4 0.0 5.9 6.2 28 28 A W E -A 20 0A 133 -8,-0.2 -24,-2.8 -2,-0.1 2,-0.3 -0.875 28.7-175.5-109.0 130.1 -1.6 2.8 4.6 29 29 A F E -A 19 0A 6 -10,-3.5 -10,-2.6 -2,-0.5 2,-0.4 -0.792 26.0-116.4-118.5 157.5 -1.4 2.1 0.9 30 30 A H E > -A 18 0A 6 -26,-0.3 4,-2.6 -2,-0.3 5,-0.3 -0.807 20.6-132.7 -92.1 140.3 -2.9 -0.6 -1.4 31 31 A Q T 4>S+ 0 0 20 -14,-0.7 5,-3.4 -2,-0.4 4,-0.4 0.876 108.0 40.2 -62.4 -36.8 -0.5 -2.9 -3.1 32 32 A V T 45S+ 0 0 80 3,-0.2 -1,-0.2 2,-0.2 3,-0.2 0.917 116.9 48.8 -75.6 -40.8 -2.2 -2.4 -6.4 33 33 A C T 45S+ 0 0 15 1,-0.2 -26,-0.3 -22,-0.1 -2,-0.2 0.847 123.7 30.4 -72.1 -32.9 -2.9 1.4 -6.1 34 34 A V T <5S- 0 0 38 -4,-2.6 -1,-0.2 -29,-0.1 -2,-0.2 0.420 117.1-109.5-104.9 3.2 0.7 2.2 -5.0 35 35 A G T 5 + 0 0 59 -4,-0.4 2,-0.3 -5,-0.3 -3,-0.2 0.998 62.3 146.1 63.6 72.9 2.3 -0.6 -7.0 36 36 A V < - 0 0 15 -5,-3.4 -1,-0.2 -6,-0.1 -2,-0.1 -0.967 41.1-132.8-130.3 145.2 3.6 -3.2 -4.5 37 37 A S >> - 0 0 57 -2,-0.3 4,-1.6 1,-0.1 3,-1.3 -0.767 22.7-118.9 -98.0 151.0 3.7 -6.9 -4.9 38 38 A P H 3> S+ 0 0 94 0, 0.0 4,-1.2 0, 0.0 5,-0.1 0.761 116.3 60.3 -58.4 -21.8 2.3 -9.3 -2.2 39 39 A E H 3> S+ 0 0 146 2,-0.2 4,-1.1 1,-0.2 5,-0.2 0.855 102.4 49.5 -73.6 -35.2 5.9 -10.7 -2.1 40 40 A M H <> S+ 0 0 47 -3,-1.3 4,-3.1 1,-0.2 3,-0.2 0.900 104.4 59.7 -73.0 -38.9 7.3 -7.3 -1.1 41 41 A A H < S+ 0 0 36 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.881 112.5 36.2 -56.9 -46.2 4.8 -6.8 1.7 42 42 A E H < S+ 0 0 173 -4,-1.2 -1,-0.2 1,-0.1 -2,-0.2 0.676 128.7 33.0 -83.1 -17.5 5.8 -9.9 3.6 43 43 A N H < S+ 0 0 129 -4,-1.1 2,-0.2 -3,-0.2 -2,-0.2 0.771 113.1 41.3-112.6 -30.1 9.6 -9.7 2.9 44 44 A E S < S- 0 0 136 -4,-3.1 2,-0.6 -5,-0.2 -1,-0.1 -0.736 78.6-102.2-123.0 168.5 10.7 -6.1 2.6 45 45 A D - 0 0 103 -2,-0.2 2,-0.9 -3,-0.0 -24,-0.1 -0.787 37.9-133.0 -90.0 115.4 10.2 -2.7 4.3 46 46 A Y - 0 0 32 -2,-0.6 -24,-0.6 -26,-0.4 -23,-0.4 -0.633 24.5-176.8 -79.3 108.9 7.8 -0.5 2.3 47 47 A I - 0 0 80 -2,-0.9 2,-0.2 -26,-0.2 -26,-0.1 -0.800 17.4-142.6 -96.0 141.7 9.1 3.0 1.8 48 48 A C - 0 0 10 -2,-0.4 -43,-0.0 1,-0.1 -28,-0.0 -0.508 28.6 -96.0-103.3 177.0 6.7 5.3 -0.0 49 49 A I S S+ 0 0 114 1,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.854 126.5 45.7 -56.1 -38.1 7.2 8.1 -2.5 50 50 A N 0 0 130 1,-0.2 -1,-0.2 0, 0.0 -3,-0.0 0.846 360.0 360.0 -77.9 -34.2 7.1 10.7 0.3 51 51 A C 0 0 63 0, 0.0 -2,-0.2 0, 0.0 -1,-0.2 0.816 360.0 360.0 -72.2 360.0 9.4 8.7 2.5