==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 12-MAR-09 2KGI . COMPND 2 MOLECULE: HISTONE DEMETHYLASE JARID1A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.SONG,Z.WANG,D.J.PATEL . 59 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4184.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 50.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 18.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 70 0, 0.0 2,-0.4 0, 0.0 11,-0.3 0.000 360.0 360.0 360.0 130.9 -6.2 -9.1 -2.7 2 2 A V - 0 0 87 8,-0.1 2,-0.2 9,-0.1 8,-0.1 -0.840 360.0-152.8-107.9 142.4 -2.5 -9.5 -2.0 3 3 A C - 0 0 14 -2,-0.4 2,-1.0 6,-0.2 26,-0.2 -0.545 30.3 -96.1-106.6 175.8 -0.0 -6.8 -2.9 4 4 A A + 0 0 50 24,-1.5 2,-0.3 -2,-0.2 23,-0.1 -0.530 68.8 127.0-104.5 69.6 3.7 -7.3 -3.6 5 5 A A > - 0 0 19 -2,-1.0 3,-0.8 1,-0.1 29,-0.1 -0.944 65.7-115.9-111.1 150.3 5.6 -6.6 -0.5 6 6 A Q T 3 S+ 0 0 157 -2,-0.3 2,-0.5 1,-0.3 28,-0.1 0.849 111.9 24.6 -44.9 -50.9 8.2 -9.1 1.1 7 7 A N T 3 S+ 0 0 132 26,-0.5 2,-0.3 2,-0.0 -1,-0.3 -0.717 91.1 159.1-121.0 74.4 6.2 -9.7 4.3 8 8 A C < - 0 0 33 -3,-0.8 2,-0.3 -2,-0.5 -6,-0.0 -0.728 27.5-154.4 -98.4 152.8 2.7 -9.0 3.3 9 9 A Q - 0 0 154 -2,-0.3 -6,-0.2 21,-0.0 24,-0.1 -0.931 18.6-130.3-119.8 147.7 -0.6 -10.0 4.8 10 10 A R + 0 0 170 -2,-0.3 -8,-0.1 1,-0.2 -2,-0.0 -0.861 31.0 171.8 -98.9 99.7 -3.9 -10.3 2.9 11 11 A P + 0 0 40 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.949 5.5 178.7 -76.1 -53.7 -6.4 -8.3 5.1 12 12 A C + 0 0 55 -11,-0.3 -2,-0.0 1,-0.1 -10,-0.0 0.603 32.5 140.6 56.0 19.2 -9.5 -8.3 2.8 13 13 A K - 0 0 136 2,-0.0 47,-0.5 46,-0.0 3,-0.3 -0.104 69.9 -73.9 -76.2-175.6 -11.4 -6.3 5.5 14 14 A D S S+ 0 0 111 1,-0.2 46,-3.5 45,-0.2 2,-0.5 0.922 114.0 3.1 -48.6 -69.0 -13.9 -3.5 4.8 15 15 A K E S+A 59 0A 123 44,-0.3 2,-0.4 2,-0.0 -1,-0.2 -0.967 71.2 173.6-130.9 118.5 -11.6 -0.7 3.9 16 16 A V E -A 58 0A 18 42,-1.8 42,-2.0 -2,-0.5 2,-0.3 -0.946 25.7-123.4-124.3 146.0 -7.8 -1.2 3.7 17 17 A D E -A 57 0A 77 -2,-0.4 14,-1.2 40,-0.2 15,-0.3 -0.645 22.7-170.7 -98.9 145.1 -5.2 1.3 2.5 18 18 A W E -AB 56 30A 16 38,-2.9 38,-1.5 -2,-0.3 2,-0.4 -0.846 7.0-155.8-127.2 161.1 -2.6 0.9 -0.2 19 19 A V E -AB 55 29A 0 10,-2.0 10,-2.7 -2,-0.3 2,-0.4 -0.986 11.0-140.9-137.4 143.4 0.4 2.8 -1.5 20 20 A Q E -AB 54 28A 24 34,-2.0 34,-0.7 -2,-0.4 26,-0.4 -0.894 22.2-122.9-104.8 139.2 2.0 2.9 -4.8 21 21 A C > - 0 0 0 6,-1.8 5,-0.5 -2,-0.4 3,-0.3 -0.662 19.2-171.3 -80.9 134.4 5.8 3.0 -5.1 22 22 A D T 5S+ 0 0 46 24,-3.0 25,-0.2 -2,-0.4 -1,-0.1 0.138 70.6 85.4-108.8 16.9 7.1 6.0 -7.1 23 23 A G T 5S- 0 0 30 23,-0.5 -1,-0.2 0, 0.0 24,-0.1 0.300 116.3 -78.3-102.5 7.6 10.6 4.6 -7.1 24 24 A G T 5S+ 0 0 56 -3,-0.3 -2,-0.1 3,-0.1 23,-0.0 -0.110 115.8 81.1 130.7 -42.1 10.3 2.4 -10.1 25 25 A C T 5 - 0 0 40 1,-0.1 3,-0.1 2,-0.1 -3,-0.1 0.776 66.6-163.2 -72.1 -20.0 8.4 -0.9 -9.2 26 26 A D < + 0 0 74 -5,-0.5 2,-0.2 1,-0.2 -1,-0.1 0.625 40.7 138.3 42.9 24.0 4.9 0.9 -9.5 27 27 A E - 0 0 103 -23,-0.1 -6,-1.8 1,-0.1 2,-0.3 -0.507 54.5-111.2 -93.4 161.1 3.5 -1.9 -7.6 28 28 A W E +B 20 0A 57 -8,-0.2 -24,-1.5 -2,-0.2 2,-0.3 -0.716 32.6 179.5 -98.7 141.3 0.9 -1.6 -4.8 29 29 A F E -B 19 0A 2 -10,-2.7 -10,-2.0 -2,-0.3 2,-0.4 -0.798 32.6-112.0-125.2 171.4 1.5 -2.2 -1.2 30 30 A H E > -B 18 0A 5 -2,-0.3 4,-1.4 -12,-0.3 3,-0.5 -0.888 32.3-123.6 -99.9 142.1 -0.6 -2.1 1.9 31 31 A Q T 4>S+ 0 0 16 -14,-1.2 5,-3.5 -2,-0.4 3,-0.2 0.881 110.2 45.7 -56.5 -39.2 0.7 0.7 4.1 32 32 A V T >45S+ 0 0 132 -15,-0.3 3,-0.7 3,-0.2 -1,-0.2 0.831 109.8 53.3 -71.7 -31.9 1.2 -1.7 7.0 33 33 A C T 345S+ 0 0 22 -3,-0.5 -26,-0.5 1,-0.2 -1,-0.2 0.697 114.8 39.0 -84.3 -19.3 2.9 -4.5 5.0 34 34 A V T 3<5S- 0 0 27 -4,-1.4 -1,-0.2 -3,-0.2 15,-0.2 0.206 118.1-106.7-112.3 15.3 5.6 -2.3 3.5 35 35 A G T < 5 + 0 0 66 -3,-0.7 2,-0.3 1,-0.2 -3,-0.2 0.898 64.1 156.2 60.7 43.5 6.1 -0.2 6.7 36 36 A V < - 0 0 14 -5,-3.5 -1,-0.2 -6,-0.2 -2,-0.1 -0.763 35.7-147.2 -95.4 144.0 4.4 3.0 5.5 37 37 A S >> - 0 0 64 -2,-0.3 4,-1.7 1,-0.1 3,-1.2 -0.949 23.9-123.5-107.6 133.6 3.0 5.4 7.8 38 38 A P H 3> S+ 0 0 72 0, 0.0 4,-1.8 0, 0.0 5,-0.2 0.850 110.4 53.7 -44.1 -44.3 -0.1 7.2 6.3 39 39 A E H 3> S+ 0 0 143 1,-0.2 4,-0.8 2,-0.2 5,-0.2 0.874 108.2 49.9 -61.8 -37.3 1.4 10.6 6.8 40 40 A M H <> S+ 0 0 112 -3,-1.2 4,-3.1 1,-0.2 3,-0.4 0.945 112.3 43.7 -71.5 -48.8 4.6 9.7 4.9 41 41 A A H < S+ 0 0 0 -4,-1.7 -1,-0.2 1,-0.2 5,-0.2 0.742 115.8 48.2 -70.0 -27.3 2.9 8.1 1.8 42 42 A E H < S+ 0 0 132 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.618 120.3 39.7 -87.4 -15.6 0.4 10.9 1.5 43 43 A N H < S+ 0 0 118 -4,-0.8 2,-0.3 -3,-0.4 -2,-0.2 0.866 118.9 25.8 -96.1 -51.2 3.1 13.5 1.9 44 44 A E S < S- 0 0 117 -4,-3.1 -1,-0.2 -5,-0.2 2,-0.1 -0.749 91.2 -84.9-118.8 162.9 6.1 12.3 -0.0 45 45 A D - 0 0 107 -2,-0.3 2,-0.7 8,-0.1 -24,-0.1 -0.406 50.6-128.1 -60.3 134.5 6.7 10.1 -3.0 46 46 A Y - 0 0 36 -26,-0.4 -24,-3.0 -5,-0.2 2,-0.6 -0.805 28.4-180.0-105.5 119.4 6.9 6.6 -1.7 47 47 A I - 0 0 83 -2,-0.7 -26,-0.1 -26,-0.2 -2,-0.0 -0.944 20.3-139.5-120.1 108.8 9.8 4.6 -2.6 48 48 A C > - 0 0 2 -2,-0.6 3,-1.3 1,-0.1 -23,-0.1 -0.192 29.5-105.9 -63.4 162.6 10.0 1.0 -1.2 49 49 A I T 3 S+ 0 0 126 1,-0.3 -1,-0.1 2,-0.2 -2,-0.0 0.715 119.3 62.8 -65.9 -20.3 13.3 -0.4 0.0 50 50 A N T 3 0 0 107 1,-0.2 -1,-0.3 0, 0.0 -2,-0.0 0.806 360.0 360.0 -73.8 -31.9 13.5 -2.5 -3.1 51 51 A C < 0 0 67 -3,-1.3 -2,-0.2 -27,-0.0 -1,-0.2 0.541 360.0 360.0 -95.2 360.0 13.7 0.7 -5.3 52 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 53 301 B A 0 0 40 0, 0.0 2,-0.6 0, 0.0 -32,-0.1 0.000 360.0 360.0 360.0-174.6 2.7 9.0 -3.7 54 302 B R E -A 20 0A 98 -34,-0.7 -34,-2.0 -8,-0.1 2,-0.2 -0.952 360.0-178.4-108.1 114.1 -0.3 7.5 -5.2 55 303 B T E +A 19 0A 61 -2,-0.6 2,-0.3 -36,-0.2 -36,-0.2 -0.614 8.9 172.2-110.9 171.4 -2.6 6.1 -2.5 56 304 B X E -A 18 0A 123 -38,-1.5 -38,-2.9 -2,-0.2 2,-0.4 -0.970 22.7-141.2-167.4 167.8 -5.9 4.2 -2.4 57 305 B Q E -A 17 0A 104 -2,-0.3 2,-0.5 -40,-0.2 -40,-0.2 -0.957 16.1-149.6-143.3 116.5 -8.4 2.4 -0.2 58 306 B T E -A 16 0A 28 -42,-2.0 -42,-1.8 -2,-0.4 2,-0.7 -0.773 9.6-148.2 -91.4 130.2 -10.2 -0.6 -1.4 59 307 B A E A 15 0A 76 -2,-0.5 -44,-0.3 -44,-0.2 -45,-0.2 -0.881 360.0 360.0-104.8 116.2 -13.6 -1.2 0.1 60 308 B R 0 0 192 -46,-3.5 -2,-0.0 -2,-0.7 0, 0.0 -0.836 360.0 360.0-111.1 360.0 -14.6 -4.8 0.5