==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 07-JAN-99 1KHM . COMPND 2 MOLECULE: PROTEIN (HNRNP K); . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.BABER,D.LIBUTTI,D.LEVENS,N.TJANDRA . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6984.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 68.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 15.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 31.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 113 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 158.8 20.6 14.2 -12.9 2 2 A S - 0 0 84 1,-0.2 2,-1.4 2,-0.1 3,-0.1 0.977 360.0-159.2 51.0 69.9 21.1 10.7 -14.5 3 3 A P S S+ 0 0 98 0, 0.0 -1,-0.2 0, 0.0 3,-0.0 0.062 78.2 65.2 -70.2 33.8 19.1 8.8 -11.9 4 4 A N S S+ 0 0 125 -2,-1.4 2,-0.2 -3,-0.2 3,-0.1 -0.406 71.1 94.5-154.1 70.0 21.0 5.6 -13.0 5 5 A S S S- 0 0 85 1,-0.7 -1,-0.1 -3,-0.1 4,-0.1 -0.671 89.5 -50.7-164.1 103.2 24.7 5.7 -12.3 6 6 A Y S > S+ 0 0 218 -2,-0.2 3,-0.9 1,-0.2 -1,-0.7 0.049 97.6 92.3 54.1-176.3 26.5 4.3 -9.3 7 7 A G G > S- 0 0 40 1,-0.3 3,-2.4 2,-0.1 -1,-0.2 0.356 93.2-120.2 76.2 -12.1 25.1 5.2 -5.8 8 8 A D G > - 0 0 116 1,-0.3 3,-1.4 2,-0.1 -1,-0.3 0.812 52.9 -82.5 46.8 28.0 23.0 2.1 -6.2 9 9 A L G < S- 0 0 103 -3,-0.9 2,-0.9 1,-0.3 -1,-0.3 0.904 80.6 -62.5 46.2 43.0 20.0 4.4 -5.9 10 10 A G G < S- 0 0 85 -3,-2.4 -1,-0.3 56,-0.0 -2,-0.1 0.083 119.5 -19.7 73.5 -32.9 20.5 4.2 -2.1 11 11 A G S < S- 0 0 18 -3,-1.4 3,-0.1 -2,-0.9 -3,-0.0 -0.906 87.6 -68.1 170.7 162.8 19.7 0.5 -2.5 12 12 A P - 0 0 112 0, 0.0 55,-0.3 0, 0.0 2,-0.2 -0.128 59.3 -93.2 -64.2 166.0 18.1 -2.1 -4.8 13 13 A I - 0 0 104 53,-0.1 2,-0.3 51,-0.0 53,-0.2 -0.588 42.0-160.0 -82.3 142.4 14.3 -2.1 -5.4 14 14 A I E -A 65 0A 71 51,-1.3 51,-1.4 -2,-0.2 2,-0.4 -0.927 6.0-157.6-123.6 149.8 12.3 -4.4 -3.1 15 15 A T E +A 64 0A 88 -2,-0.3 2,-0.3 49,-0.2 49,-0.2 -0.982 12.7 175.7-127.8 137.2 8.7 -5.9 -3.6 16 16 A T E -A 63 0A 48 47,-1.7 47,-2.6 -2,-0.4 2,-0.4 -0.994 18.0-142.0-139.2 145.1 6.4 -7.1 -0.8 17 17 A Q E -A 62 0A 137 -2,-0.3 2,-0.3 45,-0.2 45,-0.2 -0.856 12.1-162.7-111.5 145.7 2.8 -8.4 -0.9 18 18 A V E -A 61 0A 49 43,-3.0 43,-2.9 -2,-0.4 2,-0.4 -0.944 6.0-152.3-125.0 147.1 0.1 -7.7 1.7 19 19 A T E -A 60 0A 93 -2,-0.3 41,-0.2 41,-0.2 -2,-0.0 -0.970 14.8-178.4-120.4 129.4 -3.2 -9.5 2.3 20 20 A I E -A 59 0A 19 39,-2.2 39,-2.0 -2,-0.4 5,-0.1 -0.981 35.3-102.7-126.7 140.0 -6.3 -7.7 3.8 21 21 A P E > -A 58 0A 64 0, 0.0 4,-2.9 0, 0.0 3,-0.3 -0.272 36.0-115.5 -58.2 142.1 -9.7 -9.2 4.7 22 22 A K H > S+ 0 0 81 35,-2.4 4,-1.7 1,-0.2 5,-0.2 0.884 115.2 54.8 -48.6 -41.4 -12.3 -8.2 2.0 23 23 A D H > S+ 0 0 67 34,-0.3 4,-1.1 1,-0.2 -1,-0.2 0.955 116.3 35.2 -62.3 -45.9 -14.3 -6.2 4.6 24 24 A L H > S+ 0 0 46 -3,-0.3 4,-1.9 1,-0.2 5,-0.2 0.772 109.8 68.2 -77.1 -23.4 -11.2 -4.1 5.7 25 25 A A H X S+ 0 0 0 -4,-2.9 4,-2.2 1,-0.2 5,-0.2 0.896 100.5 46.8 -62.3 -38.8 -10.1 -4.1 2.0 26 26 A R H X S+ 0 0 137 -4,-1.7 4,-2.0 -5,-0.2 -1,-0.2 0.868 109.0 54.0 -74.1 -33.9 -13.0 -2.0 1.0 27 27 A S H < S+ 0 0 24 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.878 113.7 43.0 -67.5 -34.8 -12.4 0.5 3.9 28 28 A I H < S+ 0 0 2 -4,-1.9 -2,-0.2 1,-0.1 -1,-0.2 0.911 115.9 45.3 -78.8 -42.7 -8.8 1.0 2.8 29 29 A I H < S- 0 0 25 -4,-2.2 6,-0.8 -5,-0.2 7,-0.6 0.896 96.1-158.6 -69.4 -37.1 -9.4 1.2 -1.0 30 30 A G < - 0 0 34 -4,-2.0 -1,-0.1 -5,-0.2 -2,-0.1 -0.391 35.1 -73.8 86.9-171.3 -12.3 3.6 -0.5 31 31 A K S S+ 0 0 204 1,-0.1 -1,-0.1 -4,-0.1 -4,-0.0 0.903 131.3 24.3 -91.0 -51.4 -15.0 4.0 -3.2 32 32 A G S S- 0 0 53 1,-0.0 -2,-0.1 0, 0.0 -1,-0.1 0.254 107.6-112.9 -97.1 14.0 -13.1 6.1 -5.8 33 33 A G S >> S+ 0 0 14 -4,-0.2 4,-2.3 1,-0.1 3,-1.2 0.517 72.2 143.0 71.6 -4.5 -9.6 4.9 -4.6 34 34 A Q H 3> S+ 0 0 140 1,-0.3 4,-1.1 2,-0.2 5,-0.1 0.748 71.2 53.9 -42.7 -20.3 -9.0 8.5 -3.5 35 35 A R H 3> S+ 0 0 69 -6,-0.8 4,-1.6 2,-0.2 -1,-0.3 0.875 108.2 43.4 -86.3 -39.4 -7.2 6.7 -0.5 36 36 A I H <> S+ 0 0 24 -3,-1.2 4,-1.0 -7,-0.6 -2,-0.2 0.833 115.1 51.5 -76.3 -28.0 -4.8 4.5 -2.5 37 37 A K H X S+ 0 0 112 -4,-2.3 4,-1.4 2,-0.2 3,-0.3 0.958 109.4 48.0 -72.9 -49.1 -4.0 7.4 -4.9 38 38 A Q H >X S+ 0 0 108 -4,-1.1 4,-2.6 -5,-0.3 3,-0.9 0.970 109.8 51.7 -56.3 -53.6 -3.2 10.0 -2.1 39 39 A I H 3X S+ 0 0 5 -4,-1.6 4,-2.4 1,-0.3 6,-0.5 0.852 103.4 62.4 -53.2 -31.6 -0.9 7.5 -0.3 40 40 A R H 3X S+ 0 0 131 -4,-1.0 4,-1.0 -3,-0.3 -1,-0.3 0.915 111.2 35.4 -62.9 -41.2 0.9 7.0 -3.6 41 41 A H H << S+ 0 0 118 -4,-1.4 -2,-0.2 -3,-0.9 -1,-0.2 0.884 117.8 51.3 -81.3 -38.9 2.0 10.6 -3.8 42 42 A E H < S+ 0 0 157 -4,-2.6 -2,-0.2 -5,-0.2 -3,-0.2 0.919 121.5 32.7 -65.3 -41.9 2.6 11.1 -0.0 43 43 A S H < S- 0 0 12 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.737 95.0-138.8 -87.1 -23.1 4.8 8.0 0.2 44 44 A G < + 0 0 45 -4,-1.0 -3,-0.1 -5,-0.4 2,-0.1 0.536 62.2 131.2 77.1 0.6 6.3 8.3 -3.3 45 45 A A - 0 0 3 -6,-0.5 2,-0.4 24,-0.2 -1,-0.3 -0.463 57.3-129.4 -83.7 160.7 5.8 4.5 -3.4 46 46 A S E -B 64 0A 75 18,-2.1 18,-2.6 -2,-0.1 2,-0.4 -0.878 25.6-172.1-108.7 139.9 4.2 2.7 -6.3 47 47 A I E -B 63 0A 33 -2,-0.4 2,-0.4 16,-0.2 16,-0.2 -0.996 10.5-166.2-137.3 137.6 1.4 0.1 -5.5 48 48 A K E -B 62 0A 148 14,-2.2 14,-2.1 -2,-0.4 2,-0.4 -0.979 11.2-151.0-123.2 127.4 -0.4 -2.4 -7.8 49 49 A I E -B 61 0A 66 -2,-0.4 2,-0.3 12,-0.2 12,-0.2 -0.822 10.9-145.3 -99.6 134.1 -3.7 -4.1 -6.6 50 50 A D - 0 0 50 10,-1.6 10,-0.4 -2,-0.4 3,-0.1 -0.665 28.4 -99.6 -94.1 152.9 -4.4 -7.6 -8.0 51 51 A E - 0 0 168 -2,-0.3 9,-0.1 1,-0.1 -1,-0.1 -0.380 51.6 -91.1 -66.6 149.6 -8.0 -8.7 -8.7 52 52 A P - 0 0 47 0, 0.0 2,-0.6 0, 0.0 7,-0.1 -0.293 41.0-114.6 -61.0 143.3 -9.5 -10.9 -5.9 53 53 A L > - 0 0 105 5,-0.5 3,-0.8 -3,-0.1 5,-0.2 -0.685 33.4-112.6 -82.7 119.4 -9.0 -14.7 -6.4 54 54 A E T 3 S+ 0 0 176 -2,-0.6 3,-0.1 1,-0.2 -1,-0.1 -0.223 105.7 36.2 -49.8 129.9 -12.3 -16.4 -7.0 55 55 A G T 3 S+ 0 0 90 1,-0.2 2,-0.3 -3,-0.0 -1,-0.2 0.647 104.5 84.7 97.7 17.9 -12.9 -18.6 -3.9 56 56 A S < - 0 0 54 -3,-0.8 2,-1.2 2,-0.1 -1,-0.2 -0.920 64.8-149.0-153.4 123.7 -11.4 -16.2 -1.4 57 57 A E S S+ 0 0 150 -2,-0.3 -35,-2.4 -3,-0.1 2,-0.3 -0.241 71.9 94.5 -86.5 50.3 -12.9 -13.2 0.4 58 58 A D E -A 21 0A 60 -2,-1.2 -5,-0.5 -5,-0.2 2,-0.4 -0.980 61.2-145.2-140.1 154.1 -9.5 -11.4 0.5 59 59 A R E -A 20 0A 64 -39,-2.0 -39,-2.2 -2,-0.3 2,-0.4 -0.946 15.4-148.6-119.3 137.9 -7.7 -8.8 -1.6 60 60 A I E -A 19 0A 37 -2,-0.4 -10,-1.6 -10,-0.4 2,-0.4 -0.846 8.9-162.5-109.3 144.4 -3.9 -8.8 -2.1 61 61 A I E -AB 18 49A 2 -43,-2.9 -43,-3.0 -2,-0.4 2,-0.5 -0.956 6.7-151.7-126.0 144.3 -1.7 -5.7 -2.6 62 62 A T E -AB 17 48A 26 -14,-2.1 -14,-2.2 -2,-0.4 2,-0.4 -0.952 9.2-161.3-117.7 122.1 1.9 -5.4 -4.0 63 63 A I E -AB 16 47A 0 -47,-2.6 -47,-1.7 -2,-0.5 2,-0.4 -0.857 8.6-175.7-102.3 133.6 4.1 -2.5 -2.8 64 64 A T E +AB 15 46A 48 -18,-2.6 -18,-2.1 -2,-0.4 2,-0.3 -0.987 35.9 75.4-131.4 129.5 7.2 -1.5 -4.9 65 65 A G E S-A 14 0A 9 -51,-1.4 -51,-1.3 -2,-0.4 -20,-0.1 -0.963 83.0 -35.5 160.8-173.6 9.8 1.1 -4.0 66 66 A T > - 0 0 42 -2,-0.3 4,-2.9 -53,-0.2 5,-0.3 -0.305 64.3-103.6 -70.6 158.5 12.8 1.7 -1.6 67 67 A Q H > S+ 0 0 137 -55,-0.3 4,-2.8 1,-0.2 5,-0.2 0.911 123.8 45.5 -49.8 -45.1 12.6 0.1 1.9 68 68 A D H > S+ 0 0 96 2,-0.2 4,-2.8 1,-0.2 5,-0.3 0.961 111.3 50.3 -67.2 -48.4 11.8 3.5 3.4 69 69 A Q H > S+ 0 0 68 1,-0.2 4,-1.2 2,-0.2 -24,-0.2 0.900 114.2 48.0 -57.0 -35.5 9.2 4.4 0.7 70 70 A I H X S+ 0 0 7 -4,-2.9 4,-3.7 2,-0.2 5,-0.3 0.941 110.0 49.5 -71.3 -46.3 7.6 1.0 1.4 71 71 A Q H X S+ 0 0 115 -4,-2.8 4,-2.4 -5,-0.3 5,-0.3 0.936 110.2 51.4 -59.8 -43.2 7.6 1.4 5.3 72 72 A N H X S+ 0 0 69 -4,-2.8 4,-1.1 1,-0.2 -1,-0.2 0.869 115.3 44.0 -62.3 -32.0 6.0 4.8 4.9 73 73 A A H X S+ 0 0 0 -4,-1.2 4,-1.6 -5,-0.3 -2,-0.2 0.934 110.9 51.7 -78.3 -47.3 3.4 3.1 2.7 74 74 A Q H X S+ 0 0 82 -4,-3.7 4,-2.1 1,-0.2 5,-0.2 0.891 110.4 50.6 -57.9 -37.8 2.9 0.0 4.9 75 75 A Y H X S+ 0 0 156 -4,-2.4 4,-1.8 -5,-0.3 -1,-0.2 0.884 108.6 50.7 -70.6 -34.5 2.3 2.3 7.9 76 76 A L H X S+ 0 0 57 -4,-1.1 4,-1.1 -5,-0.3 -1,-0.2 0.777 109.6 53.1 -74.3 -20.2 -0.3 4.4 6.0 77 77 A L H X S+ 0 0 14 -4,-1.6 4,-1.4 2,-0.2 -2,-0.2 0.935 108.8 46.9 -77.8 -46.4 -2.0 1.1 5.1 78 78 A Q H X S+ 0 0 147 -4,-2.1 4,-0.6 1,-0.2 -2,-0.2 0.888 115.6 46.6 -62.7 -37.4 -2.3 -0.2 8.7 79 79 A N H < S+ 0 0 57 -4,-1.8 3,-0.4 1,-0.2 4,-0.4 0.792 101.9 63.7 -78.4 -24.7 -3.6 3.2 9.8 80 80 A S H >< S+ 0 0 1 -4,-1.1 3,-3.8 1,-0.2 4,-0.3 0.932 89.3 71.4 -64.2 -37.6 -6.1 3.5 7.0 81 81 A V H >< S+ 0 0 39 -4,-1.4 3,-3.4 1,-0.3 5,-0.3 0.901 83.9 66.6 -41.7 -49.8 -7.8 0.4 8.5 82 82 A K T 3X>S+ 0 0 120 -4,-0.6 4,-2.1 -3,-0.4 5,-1.0 0.794 77.1 84.1 -48.9 -21.4 -9.1 2.6 11.4 83 83 A Q T <45 + 0 0 101 -3,-3.8 2,-4.3 -4,-0.4 -1,-0.3 0.719 60.8 104.6 -55.8 -10.1 -11.1 4.3 8.6 84 84 A Y T <45S- 0 0 121 -3,-3.4 -1,-0.2 -4,-0.3 -2,-0.1 -0.181 124.0 -72.4 -66.6 55.1 -13.4 1.3 9.5 85 85 A S T 45S+ 0 0 73 -2,-4.3 -1,-0.2 2,-0.1 -2,-0.2 0.633 115.3 115.6 63.5 8.3 -15.6 3.8 11.4 86 86 A G T <5 + 0 0 49 -4,-2.1 2,-0.8 -5,-0.3 3,-0.3 0.993 64.3 51.3 -72.0 -66.9 -12.7 3.9 14.0 87 87 A K S