==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-APR-09 2KHD . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN VC_A0919; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. . AUTHOR T.A.RAMELOT,J.R.CORT,H.WANG,C.CICCOSANTI,M.JIANG,J.LIU, . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8978.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 12.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 27.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 234 0, 0.0 2,-0.0 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 18.2 -12.2 -4.5 27.4 2 2 A S - 0 0 80 1,-0.1 4,-0.1 2,-0.1 0, 0.0 -0.319 360.0-132.3 -63.7 143.5 -9.3 -4.5 29.8 3 3 A N S S+ 0 0 167 2,-0.1 2,-0.2 -2,-0.0 -1,-0.1 0.903 90.8 69.2 -64.5 -40.5 -7.1 -1.4 29.8 4 4 A Q S S- 0 0 148 1,-0.1 -2,-0.1 2,-0.0 2,-0.0 -0.572 88.2-121.9 -82.0 142.7 -3.9 -3.5 29.6 5 5 A T + 0 0 134 -2,-0.2 -1,-0.1 2,-0.0 -2,-0.1 -0.306 33.5 167.0 -78.1 165.6 -3.2 -5.5 26.4 6 6 A C + 0 0 104 -4,-0.1 2,-0.5 -2,-0.0 -4,-0.0 -0.182 6.1 177.7-178.7 72.1 -2.7 -9.3 26.3 7 7 A V - 0 0 136 1,-0.0 2,-0.7 0, 0.0 -2,-0.0 -0.719 24.2-138.3 -88.7 129.0 -2.8 -10.9 22.8 8 8 A E + 0 0 151 -2,-0.5 -1,-0.0 1,-0.2 -2,-0.0 -0.757 34.6 159.0 -90.1 113.2 -2.2 -14.6 22.8 9 9 A N + 0 0 112 -2,-0.7 -1,-0.2 3,-0.0 0, 0.0 0.883 24.6 123.4 -96.2 -67.4 0.1 -15.6 19.9 10 10 A E S S+ 0 0 142 2,-0.0 2,-0.2 0, 0.0 -1,-0.0 -0.110 79.0 17.4 41.5-120.9 1.7 -19.0 20.8 11 11 A V S S+ 0 0 131 3,-0.0 2,-0.3 0, 0.0 3,-0.1 -0.554 76.6 173.0 -79.9 140.8 0.7 -21.3 17.9 12 12 A C - 0 0 84 -2,-0.2 4,-0.1 1,-0.1 -3,-0.0 -0.983 43.0 -13.6-145.7 155.9 -0.4 -19.7 14.6 13 13 A E S S+ 0 0 180 -2,-0.3 -1,-0.1 3,-0.1 0, 0.0 0.155 82.9 95.6 42.4-167.9 -1.2 -20.8 11.0 14 14 A A S S+ 0 0 81 1,-0.1 -3,-0.0 4,-0.1 0, 0.0 0.621 98.1 13.7 62.2 133.3 -0.2 -24.3 9.9 15 15 A C S S+ 0 0 134 1,-0.2 -1,-0.1 3,-0.0 -2,-0.1 0.715 93.7 121.5 45.3 16.6 -2.7 -27.1 10.1 16 16 A G - 0 0 51 2,-0.1 3,-0.2 -4,-0.1 -1,-0.2 0.512 67.4-145.3 -84.4 -3.7 -5.1 -24.2 10.6 17 17 A C + 0 0 113 1,-0.2 2,-1.1 3,-0.0 -1,-0.1 0.783 31.9 175.6 44.5 25.9 -7.0 -25.3 7.5 18 18 A A - 0 0 101 2,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.444 55.8 -29.4 -65.0 99.9 -7.5 -21.6 6.9 19 19 A G - 0 0 57 -2,-1.1 3,-0.1 -3,-0.2 0, 0.0 -0.092 53.0-152.6 79.8 175.8 -9.2 -21.6 3.5 20 20 A E + 0 0 179 1,-0.3 2,-0.3 0, 0.0 -1,-0.1 0.343 66.5 81.3-155.8 -34.6 -8.9 -24.1 0.7 21 21 A I S S- 0 0 154 1,-0.0 2,-0.4 2,-0.0 -1,-0.3 -0.648 76.8-123.9 -87.3 139.6 -9.6 -22.4 -2.6 22 22 A G + 0 0 81 -2,-0.3 3,-0.1 1,-0.2 -1,-0.0 -0.676 57.0 128.4 -84.8 129.5 -6.9 -20.3 -4.2 23 23 A F + 0 0 145 -2,-0.4 -1,-0.2 1,-0.1 2,-0.1 0.412 50.4 80.8-148.0 -33.4 -7.7 -16.7 -4.9 24 24 A I S S- 0 0 108 1,-0.1 2,-0.2 41,-0.0 3,-0.1 -0.348 92.3 -85.9 -80.3 164.0 -4.9 -14.6 -3.4 25 25 A I - 0 0 45 1,-0.1 -1,-0.1 -2,-0.1 3,-0.1 -0.507 51.5-101.5 -72.9 133.0 -1.5 -14.0 -5.1 26 26 A R - 0 0 207 -2,-0.2 -1,-0.1 1,-0.1 2,-0.1 -0.259 41.9-111.4 -55.2 132.2 1.0 -16.7 -4.5 27 27 A E + 0 0 149 -3,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.366 58.2 130.4 -67.2 144.0 3.5 -15.6 -1.8 28 28 A G S > S- 0 0 38 3,-0.2 3,-1.6 -3,-0.1 -3,-0.0 -0.983 71.9 -82.4-177.2 175.6 7.1 -15.0 -3.0 29 29 A D T 3 S+ 0 0 111 -2,-0.3 54,-0.1 1,-0.3 53,-0.1 0.754 126.2 58.1 -68.2 -21.0 10.0 -12.5 -3.0 30 30 A D T 3 S+ 0 0 68 52,-0.1 52,-1.4 51,-0.1 2,-0.4 0.337 99.4 75.0 -90.4 9.1 8.3 -10.7 -5.9 31 31 A V E < -A 81 0A 19 -3,-1.6 2,-0.3 50,-0.2 50,-0.2 -0.969 61.8-169.3-124.8 136.1 5.2 -10.1 -3.7 32 32 A A E -A 80 0A 1 48,-2.8 48,-2.3 -2,-0.4 2,-0.4 -0.924 14.7-135.6-123.9 148.1 4.9 -7.7 -0.8 33 33 A E E -A 79 0A 106 -2,-0.3 2,-0.4 46,-0.2 46,-0.2 -0.815 14.8-162.1-104.4 142.0 2.2 -7.3 1.9 34 34 A V E -A 78 0A 9 44,-2.8 44,-1.9 -2,-0.4 2,-0.5 -0.979 4.5-170.2-125.9 132.8 0.7 -4.0 2.9 35 35 A S E +A 77 0A 81 -2,-0.4 2,-0.4 42,-0.2 42,-0.2 -0.933 13.4 168.5-126.2 110.7 -1.3 -3.4 6.2 36 36 A L E -A 76 0A 7 40,-1.6 40,-3.1 -2,-0.5 2,-0.3 -0.921 6.5-178.2-122.0 146.6 -3.1 -0.0 6.6 37 37 A F E +A 75 0A 109 -2,-0.4 2,-0.2 38,-0.2 38,-0.2 -0.972 13.2 138.7-141.9 155.8 -5.7 1.0 9.2 38 38 A G - 0 0 22 36,-1.2 3,-0.1 -2,-0.3 4,-0.0 -0.828 67.7 -45.8-166.7-155.4 -7.8 4.0 10.0 39 39 A S S S- 0 0 74 -2,-0.2 2,-0.3 1,-0.2 36,-0.1 0.912 108.2 -48.7 -63.2 -41.9 -11.3 5.2 11.1 40 40 A D S > S- 0 0 40 34,-0.1 4,-1.9 1,-0.1 32,-0.2 -0.937 72.3 -62.5-171.6-168.2 -13.0 2.8 8.7 41 41 A K H > S+ 0 0 44 30,-1.6 4,-2.9 -2,-0.3 5,-0.3 0.927 123.8 59.8 -62.4 -45.5 -13.1 1.5 5.1 42 42 A A H > S+ 0 0 56 1,-0.2 4,-1.6 29,-0.2 -1,-0.2 0.938 110.1 41.0 -50.4 -51.6 -14.1 4.9 3.7 43 43 A H H > S+ 0 0 100 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.886 113.1 54.8 -67.0 -37.3 -10.9 6.6 5.0 44 44 A L H X S+ 0 0 0 -4,-1.9 4,-2.9 1,-0.2 -2,-0.2 0.913 105.3 53.0 -63.6 -40.3 -8.8 3.5 4.0 45 45 A E H X S+ 0 0 101 -4,-2.9 4,-1.6 2,-0.2 -1,-0.2 0.925 110.4 47.8 -61.6 -42.2 -10.0 3.8 0.4 46 46 A G H X S+ 0 0 45 -4,-1.6 4,-0.9 -5,-0.3 -2,-0.2 0.952 116.6 41.9 -64.6 -48.1 -9.0 7.5 0.3 47 47 A K H X S+ 0 0 81 -4,-2.5 4,-1.8 1,-0.2 3,-0.4 0.858 108.3 62.6 -67.0 -33.9 -5.5 6.7 1.8 48 48 A L H X S+ 0 0 25 -4,-2.9 4,-2.2 -5,-0.3 -1,-0.2 0.901 94.5 60.5 -59.5 -40.2 -5.3 3.6 -0.4 49 49 A A H X S+ 0 0 56 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.909 105.8 48.0 -56.0 -40.0 -5.4 5.9 -3.5 50 50 A E H X S+ 0 0 97 -4,-0.9 4,-1.7 -3,-0.4 -1,-0.2 0.906 106.7 56.4 -68.3 -39.8 -2.2 7.6 -2.3 51 51 A Y H X S+ 0 0 11 -4,-1.8 4,-1.8 1,-0.2 -2,-0.2 0.910 106.3 50.9 -59.1 -40.7 -0.6 4.2 -1.7 52 52 A I H X S+ 0 0 27 -4,-2.2 4,-2.7 2,-0.2 5,-0.3 0.915 102.8 59.7 -64.0 -42.5 -1.2 3.2 -5.3 53 53 A S H X S+ 0 0 69 -4,-1.6 4,-2.2 1,-0.2 -1,-0.2 0.935 107.7 45.4 -53.2 -46.0 0.4 6.5 -6.6 54 54 A L H X S+ 0 0 30 -4,-1.7 4,-3.1 2,-0.2 5,-0.3 0.900 109.7 56.1 -64.7 -39.8 3.6 5.6 -4.9 55 55 A A H X S+ 0 0 0 -4,-1.8 4,-2.9 1,-0.2 -2,-0.2 0.954 110.8 42.5 -59.1 -49.5 3.4 2.0 -6.2 56 56 A K H < S+ 0 0 101 -4,-2.7 -1,-0.2 2,-0.2 -2,-0.2 0.904 114.4 52.4 -64.6 -39.7 3.1 3.2 -9.8 57 57 A Q H < S+ 0 0 144 -4,-2.2 -2,-0.2 -5,-0.3 -1,-0.2 0.957 114.8 40.5 -62.1 -49.2 5.9 5.8 -9.2 58 58 A V H < S+ 0 0 38 -4,-3.1 2,-0.4 1,-0.3 -2,-0.2 0.927 134.2 16.7 -66.5 -44.4 8.3 3.2 -7.8 59 59 A Y S >< S- 0 0 82 -4,-2.9 3,-0.9 -5,-0.3 -1,-0.3 -0.979 80.5-130.2-135.7 125.2 7.3 0.6 -10.4 60 60 A A T 3 S+ 0 0 69 -2,-0.4 3,-0.1 1,-0.2 -3,-0.1 -0.416 92.5 12.5 -71.4 144.8 5.5 1.3 -13.7 61 61 A N T 3 S- 0 0 151 1,-0.2 -1,-0.2 -2,-0.1 2,-0.1 0.885 89.8-176.0 57.3 37.4 2.5 -0.9 -14.6 62 62 A V < - 0 0 13 -3,-0.9 2,-0.4 -10,-0.1 -1,-0.2 -0.406 12.7-145.7 -67.6 138.7 2.5 -2.2 -11.0 63 63 A E E +B 81 0A 122 18,-0.8 18,-2.3 -3,-0.1 2,-0.3 -0.850 24.2 165.0-108.9 142.7 -0.0 -4.9 -10.2 64 64 A Y E -B 80 0A 94 -2,-0.4 2,-0.3 16,-0.2 16,-0.2 -0.981 18.2-157.3-151.2 161.9 -1.8 -5.3 -6.9 65 65 A E E -B 79 0A 56 14,-1.6 14,-2.2 -2,-0.3 2,-0.5 -0.998 7.5-149.0-144.2 145.6 -4.8 -7.0 -5.3 66 66 A V E -B 78 0A 64 -2,-0.3 12,-0.2 12,-0.2 3,-0.1 -0.958 14.0-140.3-120.7 130.0 -7.0 -6.4 -2.2 67 67 A A - 0 0 31 10,-1.7 10,-0.3 -2,-0.5 -43,-0.0 -0.265 48.1 -61.5 -78.6 170.7 -8.7 -9.1 -0.1 68 68 A P - 0 0 121 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.233 56.5-172.2 -54.6 134.1 -12.2 -8.8 1.4 69 69 A V - 0 0 37 -3,-0.1 2,-0.1 7,-0.1 7,-0.1 -0.993 15.0-137.5-134.8 132.8 -12.6 -5.9 3.9 70 70 A A > - 0 0 65 -2,-0.4 3,-1.2 5,-0.2 4,-0.3 -0.385 26.7-113.7 -82.4 163.7 -15.6 -5.1 6.1 71 71 A D T 3 S+ 0 0 101 1,-0.3 -30,-1.6 2,-0.1 3,-0.4 0.910 121.3 36.7 -64.9 -40.7 -16.8 -1.6 6.7 72 72 A N T 3 S+ 0 0 133 1,-0.2 -1,-0.3 -32,-0.2 -2,-0.0 0.112 85.1 111.9 -97.9 21.8 -15.8 -1.7 10.4 73 73 A A < - 0 0 24 -3,-1.2 -1,-0.2 1,-0.1 -2,-0.1 0.882 57.7-162.7 -62.4 -36.5 -12.7 -3.7 9.5 74 74 A T + 0 0 66 -3,-0.4 -36,-1.2 -4,-0.3 2,-0.4 0.432 65.9 75.9 67.8 -6.4 -10.5 -0.7 10.5 75 75 A E E -A 37 0A 54 -38,-0.2 2,-0.5 -5,-0.2 -38,-0.2 -0.989 66.5-153.0-137.9 146.0 -7.8 -2.6 8.5 76 76 A L E -A 36 0A 5 -40,-3.1 -40,-1.6 -2,-0.4 2,-0.7 -0.965 6.2-155.3-121.1 128.9 -7.1 -3.1 4.8 77 77 A H E +A 35 0A 96 -2,-0.5 -10,-1.7 -10,-0.3 2,-0.3 -0.887 27.1 158.2-106.1 114.5 -5.1 -6.1 3.5 78 78 A A E -AB 34 66A 5 -44,-1.9 -44,-2.8 -2,-0.7 2,-0.4 -0.953 23.9-154.0-135.1 154.6 -3.4 -5.5 0.1 79 79 A R E -AB 33 65A 64 -14,-2.2 -14,-1.6 -2,-0.3 2,-0.4 -0.962 5.7-158.2-129.5 146.2 -0.5 -7.0 -1.8 80 80 A F E -AB 32 64A 0 -48,-2.3 -48,-2.8 -2,-0.4 2,-0.5 -0.953 6.7-147.9-126.3 144.5 1.8 -5.6 -4.4 81 81 A K E +AB 31 63A 80 -18,-2.3 -18,-0.8 -2,-0.4 -50,-0.2 -0.939 29.5 152.2-115.2 121.5 4.0 -7.3 -7.1 82 82 A F - 0 0 7 -52,-1.4 3,-0.1 -2,-0.5 -52,-0.1 0.135 50.1-105.5-115.3-129.4 7.3 -5.8 -8.1 83 83 A E S S+ 0 0 118 1,-0.5 2,-0.3 -54,-0.1 -52,-0.1 0.475 90.9 26.4-140.5 -33.3 10.5 -7.4 -9.5 84 84 A V S > S- 0 0 61 -54,-0.1 4,-0.7 1,-0.1 3,-0.5 -0.931 74.3-116.3-135.8 159.8 13.0 -7.4 -6.6 85 85 A S H >> S+ 0 0 66 -2,-0.3 4,-1.6 1,-0.2 3,-1.1 0.861 109.0 70.3 -63.4 -34.9 12.8 -7.4 -2.8 86 86 A A H 3> S+ 0 0 53 1,-0.3 4,-2.7 2,-0.2 5,-0.3 0.923 90.5 60.1 -50.2 -45.9 14.5 -3.9 -2.7 87 87 A E H 3> S+ 0 0 45 -3,-0.5 4,-3.1 1,-0.2 5,-0.3 0.880 102.3 54.0 -52.1 -37.8 11.3 -2.4 -4.2 88 88 A K H S+ 0 0 16 -4,-2.0 4,-1.4 -5,-0.3 5,-0.8 0.881 106.3 56.0 -64.7 -36.3 6.5 7.5 6.1 98 98 A L H <5S+ 0 0 49 -4,-2.4 -1,-0.2 2,-0.2 -2,-0.2 0.951 116.9 34.0 -62.1 -47.8 3.6 8.8 4.1 99 99 A A H <5S+ 0 0 37 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.900 125.1 42.7 -74.9 -40.9 1.1 7.6 6.6 100 100 A R H <5S- 0 0 119 -4,-3.3 -2,-0.2 -5,-0.2 -1,-0.2 0.607 96.0-148.7 -80.5 -10.1 3.4 8.2 9.6 101 101 A L T <5 + 0 0 112 -4,-1.4 -3,-0.2 -5,-0.3 -4,-0.1 0.921 38.9 156.0 40.4 59.7 4.4 11.5 8.1 102 102 A E < + 0 0 132 -5,-0.8 2,-0.3 -6,-0.1 -1,-0.2 0.514 36.9 106.6 -90.2 -5.3 7.9 11.3 9.6 103 103 A H S S- 0 0 161 -6,-0.4 0, 0.0 -5,-0.0 0, 0.0 -0.553 84.1 -11.0 -77.3 136.4 9.3 13.6 6.9 104 104 A H S S- 0 0 121 -2,-0.3 3,-0.1 3,-0.0 0, 0.0 0.207 90.1 -83.1 59.7 168.9 10.1 17.1 8.0 105 105 A H S S- 0 0 125 1,-0.2 -2,-0.0 2,-0.1 0, 0.0 0.248 79.0 -26.1 -84.8-147.9 9.1 18.5 11.4 106 106 A H - 0 0 117 1,-0.1 -1,-0.2 2,-0.1 0, 0.0 -0.187 61.1-115.0 -63.7 158.5 5.7 20.0 12.4 107 107 A H 0 0 154 -3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.935 360.0 360.0 -61.5 -45.7 3.5 21.6 9.7 108 108 A H 0 0 206 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.538 360.0 360.0-105.5 360.0 3.9 25.0 11.4