==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 07-APR-09 2KHJ . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S1; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR P.SALAH,M.BISAGLIA,P.ALIPRANDI,M.UZAN,C.SIZUN,F.BONTEMS . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6410.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 52.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 25.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M >> 0 0 19 0, 0.0 3,-0.7 0, 0.0 4,-0.6 0.000 360.0 360.0 360.0-116.3 10.5 -4.8 -4.3 2 2 A F H 3> + 0 0 4 1,-0.2 4,-1.8 2,-0.2 7,-0.2 0.610 360.0 81.5 -55.1 -35.3 11.7 -1.8 -2.4 3 3 A N H 34 S+ 0 0 93 1,-0.2 -1,-0.2 2,-0.2 4,-0.1 0.830 107.8 28.8 -52.1 -40.2 14.3 -3.8 -0.3 4 4 A N H X4 S+ 0 0 126 -3,-0.7 3,-0.6 1,-0.1 -1,-0.2 0.694 117.4 64.0 -77.3 -42.6 16.8 -3.5 -3.3 5 5 A W H >X S+ 0 0 68 -4,-0.6 4,-4.0 1,-0.2 3,-1.5 0.645 72.7 85.8 -66.2 -33.7 15.3 -0.2 -4.5 6 6 A V T 3< S+ 0 0 82 -4,-1.8 -1,-0.2 1,-0.3 -3,-0.1 0.734 93.5 51.5 -49.0 -31.3 16.1 2.2 -1.4 7 7 A A T <4 S+ 0 0 94 -3,-0.6 -1,-0.3 1,-0.1 -2,-0.2 0.767 126.8 21.5 -73.2 -37.8 19.5 2.8 -3.1 8 8 A L T <4 S+ 0 0 153 -3,-1.5 2,-0.4 -4,-0.2 -2,-0.2 0.733 123.5 48.4 -96.8 -39.3 17.9 3.8 -6.5 9 9 A N < - 0 0 58 -4,-4.0 2,-0.2 -7,-0.2 -1,-0.2 -0.953 66.9-153.6-126.2 127.8 14.3 4.8 -5.7 10 10 A K - 0 0 171 -2,-0.4 3,-0.4 1,-0.1 56,-0.1 -0.652 22.2 -95.2-106.6 156.7 12.9 7.2 -3.0 11 11 A K S S+ 0 0 88 -2,-0.2 56,-0.2 1,-0.2 -1,-0.1 -0.215 94.6 58.6 -64.7 146.6 9.6 7.8 -0.9 12 12 A G S S+ 0 0 49 54,-2.8 -1,-0.2 1,-0.4 55,-0.1 0.306 85.6 108.8 106.0 -4.2 6.8 10.2 -1.9 13 13 A A S S- 0 0 37 -3,-0.4 53,-3.5 53,-0.2 -1,-0.4 -0.296 72.2-109.7 -93.3 171.7 6.3 8.4 -5.2 14 14 A I E -A 65 0A 92 51,-0.2 2,-0.3 -2,-0.1 51,-0.2 -0.926 31.6-175.7-116.7 135.3 3.4 6.2 -6.2 15 15 A V E -A 64 0A 23 49,-2.5 49,-2.8 -2,-0.4 2,-0.5 -0.979 21.7-127.5-135.9 145.6 3.6 2.3 -6.6 16 16 A T E +A 63 0A 80 -2,-0.3 2,-0.3 47,-0.2 47,-0.2 -0.833 30.2 179.4 -97.4 127.8 1.1 -0.2 -7.8 17 17 A G E -A 62 0A 3 45,-2.4 45,-2.4 -2,-0.5 2,-0.4 -0.884 21.8-125.1-126.8 160.6 0.4 -3.3 -5.6 18 18 A K E -AB 61 30A 77 12,-2.6 12,-3.9 -2,-0.3 43,-0.3 -0.872 23.1-117.8-110.9 130.9 -1.9 -6.3 -5.8 19 19 A V E + B 0 29A 13 41,-2.5 40,-3.0 38,-0.4 10,-0.2 -0.307 56.5 129.5 -65.4 137.1 -4.5 -7.5 -3.2 20 20 A T E + 0 0 58 8,-0.6 2,-0.3 1,-0.5 9,-0.2 0.567 55.3 27.7-160.4 -30.5 -3.7 -10.9 -1.8 21 21 A A E - B 0 28A 41 7,-1.2 7,-2.7 2,-0.0 -1,-0.5 -0.979 65.3-120.7-152.0 154.2 -3.6 -11.4 2.0 22 22 A V E - B 0 27A 127 -2,-0.3 5,-0.3 5,-0.2 2,-0.2 -0.831 12.7-169.0-117.1 146.0 -5.3 -9.9 5.1 23 23 A D - 0 0 70 3,-1.9 3,-0.2 -2,-0.3 5,-0.0 -0.602 48.2 -98.5-105.7 169.5 -4.4 -8.2 8.5 24 24 A A S S+ 0 0 121 1,-0.3 -1,-0.0 -2,-0.2 -2,-0.0 0.895 127.0 10.4 -60.3 -40.2 -7.0 -7.6 11.3 25 25 A K S S+ 0 0 171 2,-0.0 16,-0.5 -3,-0.0 -1,-0.3 0.090 132.7 78.1-107.0 0.9 -7.5 -3.9 10.1 26 26 A G - 0 0 11 -3,-0.2 -3,-1.9 14,-0.1 2,-0.4 -0.736 58.5-150.9-129.7 169.6 -5.5 -4.6 6.9 27 27 A A E -BC 22 39A 5 12,-1.7 12,-2.5 -5,-0.3 2,-0.6 -0.991 23.1-147.6-134.7 131.5 -4.7 -5.9 3.5 28 28 A T E -B 21 0A 29 -7,-2.7 -7,-1.2 -2,-0.4 -8,-0.6 -0.938 22.9-153.6-104.8 114.9 -1.1 -6.8 2.7 29 29 A V E -B 19 0A 2 -2,-0.6 8,-2.4 8,-0.3 2,-0.4 -0.791 16.4-113.0-102.7 133.2 -0.8 -6.0 -1.0 30 30 A E E +BD 18 36A 42 -12,-3.9 -12,-2.6 -2,-0.4 6,-0.2 -0.575 37.2 167.9 -83.6 122.5 1.8 -7.8 -3.2 31 31 A L - 0 0 19 4,-1.4 5,-0.2 -2,-0.4 -1,-0.1 0.285 47.6-107.7-123.0 2.9 4.6 -5.5 -4.4 32 32 A A S > S+ 0 0 60 3,-0.2 3,-0.7 2,-0.1 -1,-0.1 0.374 90.0 68.0 78.2 155.1 7.0 -8.2 -5.8 33 33 A D T 3 S- 0 0 153 1,-0.2 3,-0.1 -32,-0.1 -1,-0.0 0.694 127.8 -60.3 73.1 23.8 10.3 -10.1 -5.3 34 34 A G T 3 S+ 0 0 58 1,-0.2 -1,-0.2 0, 0.0 2,-0.2 -0.220 111.8 109.3 105.2 -38.6 8.4 -11.7 -2.3 35 35 A V < - 0 0 51 -3,-0.7 -4,-1.4 -4,-0.1 2,-0.2 -0.459 48.8-153.0 -89.0 146.5 7.7 -8.5 -0.3 36 36 A E B -D 30 0A 61 -6,-0.2 40,-0.2 -5,-0.2 -6,-0.2 -0.693 3.2-161.2-106.9 154.7 4.3 -6.7 0.4 37 37 A G - 0 0 5 -8,-2.4 2,-0.4 -2,-0.2 -8,-0.3 0.003 39.5 -70.7-108.8-139.7 3.3 -3.1 1.3 38 38 A Y - 0 0 68 -10,-0.2 2,-0.4 -2,-0.1 -10,-0.2 -0.965 35.2-176.8-128.5 138.1 0.0 -1.8 2.9 39 39 A L B -C 27 0A 2 -12,-2.5 -12,-1.7 -2,-0.4 2,-0.1 -0.999 21.5-134.2-133.4 131.2 -3.5 -1.6 1.6 40 40 A R > - 0 0 75 -2,-0.4 3,-2.1 -14,-0.2 -14,-0.1 -0.447 28.9-101.9 -80.6 156.4 -6.4 0.0 3.6 41 41 A A T 3 S+ 0 0 83 -16,-0.5 -15,-0.1 1,-0.3 -1,-0.1 0.631 114.6 70.1 -52.1 -25.4 -10.0 -1.4 4.1 42 42 A S T 3 S- 0 0 74 1,-0.1 2,-2.3 2,-0.0 -1,-0.3 0.566 86.3-154.0 -67.9 -18.8 -11.5 1.0 1.5 43 43 A E < - 0 0 53 -3,-2.1 -1,-0.1 1,-0.1 2,-0.1 -0.296 52.0 -69.3 73.0 -53.1 -9.7 -1.0 -1.3 44 44 A A + 0 0 26 -2,-2.3 2,-0.6 -3,-0.1 -1,-0.1 -0.519 64.7 162.4 176.4 -93.6 -9.6 2.0 -3.7 45 45 A S - 0 0 10 1,-0.1 7,-0.8 -2,-0.1 5,-0.1 -0.837 52.7-108.9 89.4-112.7 -12.8 3.4 -5.4 46 46 A R S S- 0 0 205 -2,-0.6 -1,-0.1 5,-0.1 4,-0.0 -0.101 94.5 -4.3 173.1 -36.0 -12.1 7.0 -6.7 47 47 A D S S- 0 0 138 1,-0.2 2,-0.3 0, 0.0 4,-0.1 0.397 114.5 -30.0-136.9 -80.8 -14.2 9.0 -4.2 48 48 A R S S+ 0 0 184 2,-0.1 2,-0.5 -3,-0.0 -1,-0.2 -0.977 99.4 1.2-154.1 159.1 -16.3 7.3 -1.5 49 49 A V S S- 0 0 98 -2,-0.3 2,-0.4 4,-0.0 4,-0.1 -0.505 121.5 -8.7 65.7-106.1 -18.4 4.1 -0.8 50 50 A E S S+ 0 0 118 -2,-0.5 -2,-0.1 2,-0.1 2,-0.1 -0.988 76.4 129.7-117.2 128.4 -18.1 1.9 -3.9 51 51 A D S > S- 0 0 81 -2,-0.4 3,-1.1 -4,-0.1 4,-0.2 0.046 97.7 -3.5-122.4-112.6 -16.4 3.2 -7.2 52 52 A A G > S+ 0 0 27 -7,-0.8 3,-1.7 1,-0.2 4,-0.4 0.491 111.9 99.9 -48.4 -12.2 -13.8 0.8 -8.5 53 53 A T G 3 S+ 0 0 35 1,-0.3 -1,-0.2 2,-0.2 3,-0.2 0.720 82.1 48.9 -60.5 -26.1 -14.5 -1.3 -5.2 54 54 A L G < S+ 0 0 149 -3,-1.1 -1,-0.3 1,-0.1 -2,-0.1 0.612 113.7 47.2 -81.1 -20.7 -16.7 -3.7 -7.3 55 55 A V S < S+ 0 0 122 -3,-1.7 2,-0.5 -4,-0.2 -2,-0.2 0.187 95.4 75.8-121.0 17.6 -14.1 -4.2 -10.1 56 56 A L + 0 0 25 -4,-0.4 2,-0.2 -3,-0.2 -1,-0.1 -0.990 60.9 178.0-133.1 132.7 -10.9 -4.8 -8.2 57 57 A S > - 0 0 71 -2,-0.5 3,-2.1 1,-0.1 -38,-0.4 -0.575 43.8 -66.9-111.9 164.4 -10.5 -8.2 -6.7 58 58 A V T 3 S+ 0 0 95 1,-0.3 -38,-0.2 -2,-0.2 3,-0.1 -0.504 126.9 30.9 -61.1 122.5 -7.8 -10.2 -4.7 59 59 A G T 3 S+ 0 0 38 -40,-3.0 2,-0.3 1,-0.4 -1,-0.3 0.234 101.8 105.7 96.9 -3.9 -4.8 -10.6 -7.2 60 60 A D < - 0 0 86 -3,-2.1 -41,-2.5 -41,-0.1 -1,-0.4 -0.766 64.2-126.1-108.7 149.2 -5.7 -7.2 -8.9 61 61 A E E +A 18 0A 111 -2,-0.3 2,-0.3 -43,-0.3 -43,-0.3 -0.678 22.7 179.5-107.6 152.2 -3.7 -4.0 -8.5 62 62 A V E -A 17 0A 19 -45,-2.4 -45,-2.4 -2,-0.2 2,-0.4 -0.922 34.7-103.6-139.6 160.3 -4.2 -0.3 -7.5 63 63 A E E +A 16 0A 103 -2,-0.3 2,-0.3 -47,-0.2 -47,-0.2 -0.761 40.7 175.6 -95.3 128.9 -1.8 2.7 -7.1 64 64 A A E -A 15 0A 5 -49,-2.8 -49,-2.5 -2,-0.4 2,-0.3 -0.760 34.0 -97.0-131.6 170.3 -0.8 3.8 -3.6 65 65 A K E -AE 14 79A 36 14,-3.2 14,-1.7 -2,-0.3 2,-1.0 -0.712 29.3-124.6 -98.5 141.0 1.5 6.4 -2.2 66 66 A F E + E 0 78A 1 -53,-3.5 -54,-2.8 -2,-0.3 -53,-0.2 -0.793 43.6 165.6 -96.0 102.3 5.0 5.3 -1.1 67 67 A T E - 0 0 59 10,-1.8 2,-0.3 -2,-1.0 -1,-0.2 0.970 46.1 -42.4 -85.3 -66.6 4.9 6.6 2.5 68 68 A G E - E 0 77A 16 9,-1.0 9,-2.7 -57,-0.1 2,-0.3 -0.955 44.9-122.0-165.5 166.0 7.8 5.2 4.7 69 69 A V E - E 0 76A 17 -2,-0.3 2,-0.5 7,-0.2 7,-0.3 -0.929 18.9-130.0-122.1 142.4 9.8 2.0 5.5 70 70 A D E >> - E 0 75A 89 5,-2.2 4,-1.4 -2,-0.3 5,-0.8 -0.853 14.2-147.7 -94.4 127.9 10.3 0.3 8.8 71 71 A R T 45S+ 0 0 156 -2,-0.5 -1,-0.1 1,-0.2 0, 0.0 0.751 94.1 51.1 -67.2 -32.1 14.0 -0.4 9.5 72 72 A K T 45S+ 0 0 172 1,-0.2 -1,-0.2 3,-0.1 -2,-0.0 0.719 119.2 34.9 -78.9 -29.4 13.5 -3.7 11.4 73 73 A N T 45S- 0 0 115 -3,-0.4 -2,-0.2 2,-0.2 -1,-0.2 0.569 97.3-141.0-102.7 -13.8 11.2 -5.3 8.8 74 74 A R T <5 + 0 0 156 -4,-1.4 2,-0.3 1,-0.2 -3,-0.2 0.694 61.8 109.7 55.0 33.1 13.1 -3.7 5.8 75 75 A A E < -E 70 0A 16 -5,-0.8 -5,-2.2 -73,-0.1 -1,-0.2 -0.825 65.7-100.4-134.1 164.5 9.9 -3.1 3.9 76 76 A I E -E 69 0A 10 -2,-0.3 2,-0.5 -7,-0.3 -7,-0.2 -0.566 14.6-144.1 -94.5 140.5 7.5 -0.3 2.7 77 77 A S E -E 68 0A 40 -9,-2.7 -10,-1.8 -2,-0.2 -9,-1.0 -0.952 20.3-161.3-109.0 123.8 4.2 1.1 4.0 78 78 A L E -E 66 0A 5 -2,-0.5 2,-0.5 -12,-0.2 -12,-0.2 -0.908 12.3-153.4-110.9 133.5 1.8 2.2 1.3 79 79 A S E > -E 65 0A 17 -14,-1.7 -14,-3.2 -2,-0.4 3,-0.7 -0.960 27.0-129.6-105.9 123.3 -1.2 4.5 1.8 80 80 A V T 3 S+ 0 0 13 -2,-0.5 -17,-0.1 -16,-0.3 3,-0.0 0.241 83.6 76.9 -49.2 -16.9 -3.8 3.6 -1.0 81 81 A R T 3 S- 0 0 129 -2,-0.6 2,-0.4 1,-0.1 -1,-0.2 0.753 85.9-123.2 -81.5 -42.3 -4.6 7.0 -2.4 82 82 A A S < S+ 0 0 27 -3,-0.7 -16,-0.2 -69,-0.1 -3,-0.1 -0.771 99.5 19.2 115.8 -73.3 -1.9 8.4 -4.7 83 83 A K S S+ 0 0 147 -2,-0.4 2,-1.9 1,-0.1 -1,-0.1 0.899 70.1 171.3 -93.6 -49.0 -1.1 11.8 -3.0 84 84 A D S S+ 0 0 38 1,-0.2 2,-1.3 2,-0.1 -1,-0.1 -0.454 71.6 57.4 73.7 -71.6 -2.4 11.4 0.6 85 85 A E S S+ 0 0 114 -2,-1.9 -1,-0.2 1,-0.2 3,-0.0 -0.364 84.4 87.1 -88.7 56.4 -0.8 14.7 2.1 86 86 A A + 0 0 47 -2,-1.3 -1,-0.2 3,-0.1 -2,-0.1 -0.386 52.8 98.8-152.3 59.9 -2.6 17.0 -0.5 87 87 A D S S- 0 0 110 -4,-0.1 -2,-0.1 -3,-0.0 -1,-0.0 0.466 115.6 -48.3-123.3 -13.9 -6.0 17.8 1.2 88 88 A E 0 0 160 -3,-0.0 -3,-0.1 0, 0.0 -2,-0.0 -0.119 360.0 360.0 169.9 -43.9 -5.3 21.2 2.8 89 89 A K 0 0 205 0, 0.0 -3,-0.1 0, 0.0 0, 0.0 -0.712 360.0 360.0 80.2 360.0 -2.0 20.4 4.5