==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/SS-DNA BINDING PROTE20-APR-09 2KI2 . COMPND 2 MOLECULE: SS-DNA BINDING PROTEIN 12RNP2; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR C.MA,J.LEE,J.KIM,S.PARK,A.KWON,B.LEE . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6155.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 23.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 128 0, 0.0 50,-0.3 0, 0.0 51,-0.1 0.000 360.0 360.0 360.0 100.4 2.1 4.3 -14.4 2 2 A R E -A 50 0A 158 48,-1.5 48,-1.4 49,-0.1 2,-0.4 -0.318 360.0-118.6 -89.0 175.3 3.6 5.7 -11.1 3 3 A N E -A 49 0A 58 46,-0.2 74,-2.6 -2,-0.1 2,-0.3 -0.971 19.5-152.2-122.0 129.5 4.8 3.9 -8.1 4 4 A I E -AB 48 76A 5 44,-3.4 44,-1.5 -2,-0.4 2,-0.5 -0.750 2.9-155.2-100.6 146.5 3.3 4.2 -4.6 5 5 A Y E +AB 47 75A 81 70,-3.2 70,-2.9 -2,-0.3 2,-0.4 -0.963 13.9 177.7-125.5 116.4 5.1 3.7 -1.3 6 6 A V E +AB 46 74A 16 40,-1.3 40,-3.6 -2,-0.5 68,-0.2 -0.959 4.0 178.9-120.8 134.2 3.3 2.8 1.9 7 7 A G E +A 45 0A 13 66,-1.5 66,-0.3 -2,-0.4 38,-0.2 -0.458 52.5 64.9-118.0-168.6 4.8 2.0 5.3 8 8 A N E + 0 0 99 36,-1.3 2,-0.3 1,-0.2 37,-0.2 0.835 69.3 163.3 60.0 33.2 3.8 1.1 8.8 9 9 A L E -A 44 0A 11 35,-0.9 35,-1.9 -3,-0.2 -1,-0.2 -0.678 20.3-160.1 -87.7 136.4 2.4 -2.2 7.4 10 10 A V > - 0 0 66 -2,-0.3 3,-0.7 33,-0.2 4,-0.2 -0.465 40.1 -82.4-105.9 179.5 1.7 -5.0 9.9 11 11 A Y T 3 S- 0 0 126 1,-0.3 32,-0.1 -2,-0.2 -2,-0.0 0.919 121.7 -6.1 -46.4 -53.4 1.3 -8.8 9.5 12 12 A S T 3 S+ 0 0 106 1,-0.1 -1,-0.3 3,-0.0 31,-0.0 -0.475 87.9 136.5-146.4 68.1 -2.3 -8.4 8.4 13 13 A A S < S- 0 0 38 -3,-0.7 -2,-0.1 -2,-0.0 -4,-0.1 0.977 78.5 -75.9 -77.4 -76.4 -3.4 -4.7 8.7 14 14 A T S >> S+ 0 0 24 -4,-0.2 4,-2.7 3,-0.0 3,-1.0 0.336 105.9 93.6-163.5 -23.0 -5.3 -3.9 5.6 15 15 A S H 3> S+ 0 0 23 1,-0.3 4,-2.0 2,-0.2 3,-0.5 0.939 97.0 40.2 -47.3 -58.2 -2.9 -3.4 2.7 16 16 A E H 34 S+ 0 0 100 1,-0.2 -1,-0.3 2,-0.2 4,-0.2 0.640 117.2 54.0 -67.2 -12.8 -3.2 -7.0 1.6 17 17 A Q H <4 S+ 0 0 137 -3,-1.0 4,-0.3 2,-0.1 3,-0.3 0.755 110.4 43.0 -90.5 -29.9 -6.9 -6.6 2.3 18 18 A V H >X S+ 0 0 48 -4,-2.7 4,-3.7 -3,-0.5 3,-1.3 0.730 92.2 81.6 -87.5 -25.5 -7.4 -3.5 0.2 19 19 A K T 3< S+ 0 0 68 -4,-2.0 4,-0.5 -5,-0.3 -1,-0.2 0.777 90.8 56.0 -50.7 -26.8 -5.4 -4.7 -2.8 20 20 A E T 34 S+ 0 0 131 -3,-0.3 -1,-0.3 -4,-0.2 4,-0.2 0.842 116.0 34.1 -75.0 -34.6 -8.5 -6.6 -3.7 21 21 A L T X> S+ 0 0 109 -3,-1.3 4,-1.7 -4,-0.3 3,-1.4 0.767 104.7 71.3 -89.6 -30.2 -10.6 -3.5 -3.8 22 22 A F H 3X>S+ 0 0 48 -4,-3.7 4,-1.8 1,-0.3 5,-1.3 0.732 96.3 55.9 -58.1 -21.8 -7.8 -1.2 -5.1 23 23 A S H 345S+ 0 0 44 -4,-0.5 -1,-0.3 3,-0.3 -2,-0.2 0.732 106.2 48.9 -82.6 -24.4 -8.2 -3.0 -8.4 24 24 A Q H <45S+ 0 0 155 -3,-1.4 -2,-0.2 -4,-0.2 -1,-0.2 0.746 129.8 20.7 -85.4 -26.5 -11.9 -2.2 -8.6 25 25 A F H <5S+ 0 0 200 -4,-1.7 -2,-0.2 29,-0.0 -3,-0.2 0.664 145.3 19.3-111.7 -29.3 -11.4 1.5 -7.9 26 26 A G T <5S- 0 0 18 -4,-1.8 25,-0.4 -5,-0.4 -3,-0.3 0.659 86.4-139.6-113.5 -26.8 -7.7 2.0 -8.7 27 27 A K < - 0 0 152 -5,-1.3 -4,-0.3 -6,-0.2 24,-0.2 0.951 24.1-150.5 64.1 51.1 -7.0 -1.1 -11.0 28 28 A V - 0 0 24 -6,-0.4 22,-0.2 -9,-0.2 3,-0.2 -0.242 14.5-165.1 -54.8 135.8 -3.6 -1.7 -9.4 29 29 A F S S+ 0 0 119 20,-3.2 2,-0.4 1,-0.3 21,-0.2 0.851 74.8 16.4 -91.0 -42.5 -1.2 -3.3 -11.9 30 30 A N E +C 49 0A 86 19,-1.0 19,-3.0 2,-0.0 2,-0.4 -0.982 64.5 172.6-138.8 124.9 1.5 -4.5 -9.5 31 31 A V E +C 48 0A 51 -2,-0.4 2,-0.2 17,-0.2 17,-0.2 -0.976 13.0 150.0-136.2 121.5 1.2 -4.9 -5.7 32 32 A K E -C 47 0A 136 15,-1.0 15,-2.4 -2,-0.4 2,-0.3 -0.808 22.7-149.4-138.4 178.8 3.7 -6.5 -3.4 33 33 A L E -C 46 0A 44 13,-0.2 13,-0.2 -2,-0.2 2,-0.2 -0.893 13.8-118.5-145.4 173.8 5.1 -6.3 0.2 34 34 A I - 0 0 41 11,-1.6 9,-0.3 -2,-0.3 2,-0.2 -0.523 21.7-126.2-110.3 179.0 8.2 -6.8 2.2 35 35 A Y - 0 0 136 7,-0.2 10,-0.1 -2,-0.2 -1,-0.0 -0.713 30.1-102.7-121.6 173.2 9.3 -9.1 5.1 36 36 A D - 0 0 28 5,-1.6 -1,-0.0 -2,-0.2 8,-0.0 0.604 51.3-126.9 -70.7 -11.1 10.7 -8.7 8.6 37 37 A R S S+ 0 0 226 4,-0.2 -1,-0.1 1,-0.1 -3,-0.0 0.835 98.8 46.5 67.0 33.2 14.1 -9.8 7.1 38 38 A E S S+ 0 0 141 3,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.240 118.1 29.5-165.3 -43.1 14.4 -12.5 9.8 39 39 A T S S- 0 0 86 2,-0.2 0, 0.0 0, 0.0 0, 0.0 0.391 97.2-121.7-110.6 -1.5 11.1 -14.4 10.1 40 40 A K + 0 0 126 1,-0.2 -5,-0.0 3,-0.1 0, 0.0 0.836 67.9 137.1 63.1 33.0 10.0 -14.0 6.4 41 41 A K - 0 0 93 2,-0.1 -5,-1.6 1,-0.0 2,-0.5 -0.854 65.1 -98.1-113.1 148.1 6.8 -12.3 7.7 42 42 A P + 0 0 38 0, 0.0 -7,-0.2 0, 0.0 2,-0.2 -0.489 67.3 129.1 -66.7 113.2 5.1 -9.1 6.3 43 43 A K + 0 0 98 -2,-0.5 -33,-0.2 -9,-0.3 -2,-0.1 -0.675 49.7 36.8-170.2 109.2 6.2 -6.2 8.5 44 44 A G E S-A 9 0A 27 -35,-1.9 -36,-1.3 -2,-0.2 -35,-0.9 -0.446 102.9 -32.0 150.5 -71.6 7.6 -2.9 7.5 45 45 A F E -A 7 0A 75 -38,-0.2 -11,-1.6 -37,-0.2 -38,-0.3 -0.956 47.7-141.4-165.6 179.1 6.1 -1.4 4.3 46 46 A G E -AC 6 33A 2 -40,-3.6 -40,-1.3 -2,-0.3 2,-0.3 -0.803 10.0-127.9-143.2-175.8 4.6 -2.2 0.9 47 47 A F E -AC 5 32A 65 -15,-2.4 -15,-1.0 -2,-0.2 2,-0.3 -0.969 13.1-171.4-140.7 155.1 4.4 -1.2 -2.7 48 48 A V E -AC 4 31A 17 -44,-1.5 -44,-3.4 -2,-0.3 2,-0.6 -0.968 10.3-154.1-151.4 131.4 1.7 -0.4 -5.3 49 49 A E E +AC 3 30A 60 -19,-3.0 -20,-3.2 -2,-0.3 -19,-1.0 -0.922 32.3 145.5-110.9 116.5 1.8 0.2 -9.1 50 50 A M E -A 2 0A 1 -48,-1.4 -48,-1.5 -2,-0.6 -22,-0.1 -0.911 48.3 -81.4-142.3 168.2 -1.0 2.3 -10.6 51 51 A Q > - 0 0 95 -25,-0.4 4,-0.8 -50,-0.3 -1,-0.2 0.087 49.0 -99.4 -60.0 179.7 -1.6 4.8 -13.3 52 52 A E T 4 S+ 0 0 112 1,-0.2 -1,-0.1 2,-0.1 -49,-0.0 -0.112 113.7 62.7 -96.2 35.5 -0.8 8.5 -12.9 53 53 A E T > S+ 0 0 149 -27,-0.1 4,-0.6 -51,-0.1 -1,-0.2 0.636 105.1 36.1-123.9 -41.1 -4.5 9.4 -12.1 54 54 A S H > S+ 0 0 21 1,-0.2 4,-3.1 2,-0.2 -2,-0.1 0.722 107.1 67.4 -87.8 -24.8 -5.3 7.5 -8.9 55 55 A V H X S+ 0 0 9 -4,-0.8 4,-1.2 1,-0.2 5,-0.2 0.797 94.5 59.7 -65.4 -28.8 -1.9 8.0 -7.4 56 56 A S H > S+ 0 0 93 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.931 120.7 23.6 -65.4 -47.3 -2.6 11.8 -7.1 57 57 A E H X>S+ 0 0 126 -4,-0.6 4,-2.1 2,-0.2 5,-0.5 0.714 108.8 78.1 -90.2 -25.0 -5.6 11.3 -4.9 58 58 A A H <5S+ 0 0 15 -4,-3.1 4,-0.3 1,-0.2 5,-0.3 0.892 111.2 25.2 -50.4 -45.3 -4.6 7.9 -3.6 59 59 A I H <5S+ 0 0 11 -4,-1.2 4,-0.4 3,-0.2 -1,-0.2 0.739 113.6 71.6 -90.4 -28.3 -2.1 9.6 -1.2 60 60 A A H <5S+ 0 0 54 -4,-0.7 -2,-0.2 -5,-0.2 -3,-0.1 0.943 115.0 20.1 -52.3 -58.8 -4.0 12.9 -1.1 61 61 A K T <5S+ 0 0 153 -4,-2.1 -1,-0.2 3,-0.0 -2,-0.1 0.579 131.4 48.3 -90.4 -12.5 -6.9 11.7 1.0 62 62 A L S