==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 01-MAY-09 2KIB . COMPND 2 MOLECULE: NFGAIL SEGMENT FROM HUMAN ISLET AMYLOID . SOURCE 2 SYNTHETIC: YES . AUTHOR J.T.NIELSEN,M.BJERRING,M.D.JEPPESEN,R.O.PEDERSEN, . 56 8 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4519.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 71.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 36 64.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 121 0, 0.0 38,-3.1 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 133.7 35.3 -9.7 -2.8 2 2 A F E +AB 22 38A 35 20,-2.2 20,-3.1 36,-0.2 2,-0.4 -0.905 360.0 173.3-107.6 125.7 38.2 -7.3 -1.8 3 3 A G E +AB 21 37A 20 34,-2.4 34,-2.7 -2,-0.5 2,-0.4 -0.996 2.4 175.5-133.4 134.6 40.6 -6.1 -4.5 4 4 A A E -AB 20 36A 27 16,-2.6 16,-2.6 -2,-0.4 2,-0.4 -0.999 7.1-173.9-142.1 137.8 43.4 -3.5 -4.2 5 5 A I E -AB 19 35A 104 30,-2.8 30,-2.4 -2,-0.4 2,-0.4 -0.989 2.4-175.7-135.5 125.8 46.0 -2.2 -6.6 6 6 A L E AB 18 34A 32 12,-3.2 12,-1.8 -2,-0.4 28,-0.2 -0.981 360.0 360.0-124.6 128.1 48.9 0.2 -5.8 7 7 A S 0 0 98 26,-2.7 27,-0.1 -2,-0.4 -1,-0.1 0.799 360.0 360.0-110.4 360.0 51.3 1.6 -8.4 8 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 9 1 B N 0 0 112 0, 0.0 38,-2.3 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 107.2 33.9 -6.2 6.6 10 2 B F E -DE 30 46B 65 20,-2.5 20,-2.7 37,-0.2 2,-0.4 -0.994 360.0-177.6-132.9 130.0 36.4 -3.4 7.2 11 3 B G E -DE 29 45B 5 34,-2.4 34,-2.8 -2,-0.4 2,-0.4 -0.984 1.0-178.9-129.1 137.1 39.2 -2.3 4.8 12 4 B A E -DE 28 44B 14 16,-2.5 16,-2.7 -2,-0.4 2,-0.4 -0.994 7.4-168.8-139.9 132.7 41.9 0.4 5.4 13 5 B I E -DE 27 43B 33 30,-2.8 30,-2.4 -2,-0.4 2,-0.4 -0.979 6.9-167.0-123.2 125.2 44.7 1.6 3.2 14 6 B L E DE 26 42B 76 12,-2.9 12,-2.4 -2,-0.4 28,-0.2 -0.935 360.0 360.0-115.0 133.0 47.5 3.9 4.5 15 7 B S 0 0 60 26,-2.1 27,-0.2 -2,-0.4 -1,-0.1 0.272 360.0 360.0-171.8 360.0 50.0 5.8 2.3 16 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 17 1 C N 0 0 164 0, 0.0 2,-0.5 0, 0.0 -10,-0.2 0.000 360.0 360.0 360.0 134.4 54.4 -1.9 -8.0 18 2 C F E +A 6 0A 159 -12,-1.8 -12,-3.2 -11,-0.1 2,-0.4 -0.909 360.0 173.0-108.3 126.1 52.2 -3.4 -5.2 19 3 C G E +A 5 0A 58 -2,-0.5 2,-0.4 -14,-0.2 -14,-0.2 -0.997 2.9 175.3-134.3 134.7 49.1 -5.5 -6.0 20 4 C A E -A 4 0A 57 -16,-2.6 -16,-2.6 -2,-0.4 2,-0.4 -0.996 7.3-173.5-142.9 135.1 46.9 -7.5 -3.7 21 5 C I E -A 3 0A 140 -2,-0.4 2,-0.4 -18,-0.2 -18,-0.2 -0.990 4.1-175.8-131.5 125.4 43.7 -9.4 -4.3 22 6 C L E A 2 0A 91 -20,-3.1 -20,-2.2 -2,-0.4 -2,-0.0 -0.977 360.0 360.0-123.8 130.8 41.5 -11.0 -1.5 23 7 C S 0 0 149 -2,-0.4 -20,-0.0 -22,-0.2 -2,-0.0 -0.384 360.0 360.0-163.7 360.0 38.4 -13.1 -2.1 24 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 25 1 D N 0 0 161 0, 0.0 2,-0.4 0, 0.0 -10,-0.2 0.000 360.0 360.0 360.0 107.1 53.1 2.3 2.0 26 2 D F E -D 14 0B 125 -12,-2.4 -12,-2.9 2,-0.0 2,-0.4 -0.994 360.0-177.7-133.0 129.8 51.0 0.2 4.4 27 3 D G E -D 13 0B 50 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.984 1.3-178.6-128.7 136.7 47.7 -1.6 3.6 28 4 D A E -D 12 0B 36 -16,-2.7 -16,-2.5 -2,-0.4 2,-0.4 -0.996 7.0-168.3-139.3 134.0 45.5 -3.7 6.0 29 5 D I E -D 11 0B 62 -2,-0.4 2,-0.4 -18,-0.2 -18,-0.2 -0.980 4.8-168.4-124.0 127.1 42.3 -5.6 5.4 30 6 D L E D 10 0B 111 -20,-2.7 -20,-2.5 -2,-0.4 -2,-0.0 -0.951 360.0 360.0-117.4 131.5 40.1 -7.0 8.2 31 7 D S 0 0 136 -2,-0.4 -1,-0.1 -22,-0.2 -20,-0.1 0.342 360.0 360.0-160.0 360.0 37.2 -9.4 7.6 32 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 33 1 E N 0 0 115 0, 0.0 -26,-2.7 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 133.3 48.6 5.9 -8.3 34 2 E F E +BC 6 54A 41 20,-2.0 20,-3.3 -28,-0.2 2,-0.4 -0.905 360.0 173.5-107.5 125.6 46.3 4.4 -5.7 35 3 E G E +BC 5 53A 7 -30,-2.4 -30,-2.8 -2,-0.5 2,-0.4 -0.995 2.9 175.8-133.1 135.9 43.4 2.2 -6.8 36 4 E A E -BC 4 52A 21 16,-2.6 16,-2.7 -2,-0.4 2,-0.4 -0.996 7.4-173.8-143.5 135.6 40.9 0.2 -4.7 37 5 E I E -BC 3 51A 113 -34,-2.7 -34,-2.4 -2,-0.4 2,-0.4 -0.989 4.2-176.5-132.2 125.1 37.8 -1.9 -5.6 38 6 E L E BC 2 50A 25 12,-3.3 12,-2.1 -2,-0.4 -36,-0.2 -0.979 360.0 360.0-124.3 130.7 35.5 -3.5 -3.1 39 7 E S 0 0 90 -38,-3.1 -37,-0.1 -2,-0.4 12,-0.0 -0.405 360.0 360.0-164.5 360.0 32.5 -5.7 -3.9 40 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 41 1 F N 0 0 110 0, 0.0 -26,-2.1 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 107.5 46.8 9.7 1.7 42 2 F F E -EF 14 62B 68 20,-2.5 20,-2.8 -27,-0.2 2,-0.4 -0.995 360.0-177.8-133.1 130.1 44.4 7.5 3.9 43 3 F G E -EF 13 61B 19 -30,-2.4 -30,-2.8 -2,-0.4 2,-0.4 -0.985 1.2-179.3-129.2 137.2 41.3 5.6 2.8 44 4 F A E -EF 12 60B 15 16,-2.6 16,-2.6 -2,-0.4 2,-0.5 -0.992 7.2-168.8-140.5 131.9 38.9 3.6 5.0 45 5 F I E -EF 11 59B 30 -34,-2.8 -34,-2.4 -2,-0.4 2,-0.5 -0.977 5.1-167.2-122.9 125.8 35.8 1.6 4.1 46 6 F L E EF 10 58B 77 12,-2.7 12,-2.5 -2,-0.5 -36,-0.2 -0.942 360.0 360.0-114.5 129.1 33.4 0.3 6.7 47 7 F S 0 0 76 -38,-2.3 -37,-0.2 -2,-0.5 -1,-0.1 0.360 360.0 360.0-161.3 360.0 30.7 -2.3 5.8 48 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 49 1 G N 0 0 178 0, 0.0 2,-0.5 0, 0.0 -10,-0.2 0.000 360.0 360.0 360.0 132.7 29.5 -2.3 -4.7 50 2 G F E +C 38 0A 78 -12,-2.1 -12,-3.3 2,-0.0 2,-0.4 -0.902 360.0 173.3-107.3 126.0 32.2 0.1 -3.5 51 3 G G E +C 37 0A 67 -2,-0.5 2,-0.3 -14,-0.2 -14,-0.2 -0.997 2.4 175.3-133.7 134.7 34.8 1.5 -6.0 52 4 G A E -C 36 0A 35 -16,-2.7 -16,-2.6 -2,-0.4 2,-0.4 -1.000 7.3-173.7-142.3 138.9 37.4 4.1 -5.4 53 5 G I E -C 35 0A 130 -2,-0.3 2,-0.4 -18,-0.2 -18,-0.2 -0.989 3.2-176.5-136.1 125.9 40.3 5.5 -7.5 54 6 G L E C 34 0A 69 -20,-3.3 -20,-2.0 -2,-0.4 -2,-0.0 -0.982 360.0 360.0-125.7 130.6 43.0 7.9 -6.5 55 7 G S 0 0 155 -2,-0.4 -1,-0.1 -22,-0.2 -20,-0.0 0.810 360.0 360.0-109.1 360.0 45.7 9.4 -8.7 56 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 57 1 H N 0 0 168 0, 0.0 2,-0.4 0, 0.0 -10,-0.2 0.000 360.0 360.0 360.0 106.5 27.3 0.8 4.7 58 2 H F E -F 46 0B 122 -12,-2.5 -12,-2.7 2,-0.0 2,-0.4 -0.994 360.0-178.1-132.5 130.3 29.7 3.7 5.5 59 3 H G E -F 45 0B 35 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.985 0.8-178.9-129.5 137.7 32.7 4.8 3.4 60 4 H A E -F 44 0B 34 -16,-2.6 -16,-2.6 -2,-0.4 2,-0.5 -0.995 7.3-168.0-140.4 133.3 35.2 7.6 4.2 61 5 H I E -F 43 0B 96 -2,-0.4 2,-0.4 -18,-0.2 -18,-0.2 -0.979 5.7-168.0-123.4 125.6 38.2 8.9 2.2 62 6 H L E F 42 0B 106 -20,-2.8 -20,-2.5 -2,-0.5 -2,-0.0 -0.942 360.0 360.0-115.6 132.2 40.9 11.2 3.8 63 7 H S 0 0 138 -2,-0.4 -1,-0.1 -22,-0.2 -20,-0.0 0.202 360.0 360.0-167.6 360.0 43.5 13.0 1.7