==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LYSINE BINDING SITE 26-AUG-98 4KIV . COMPND 2 MOLECULE: APOLIPOPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.MOCHALKIN,A.TULINSKY,A.SCANU . 79 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4465.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 38.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 15.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A Q 0 0 105 0, 0.0 3,-0.1 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 84.0 13.6 36.5 0.1 2 1 A a - 0 0 37 1,-0.3 2,-0.2 8,-0.0 76,-0.1 0.242 360.0 -61.6 -67.4-131.2 13.4 38.8 3.2 3 2 A Y B -a 78 0A 32 74,-0.9 76,-2.9 7,-0.1 2,-0.3 -0.648 47.9-138.9-117.0 167.9 11.2 36.8 5.6 4 3 A H > - 0 0 121 75,-0.2 3,-1.9 -2,-0.2 5,-0.4 -0.850 60.9 -21.0-123.7 152.5 7.6 35.6 5.3 5 4 A G T 3 S- 0 0 33 -2,-0.3 74,-0.1 1,-0.3 -2,-0.1 -0.122 133.9 -18.1 45.0-130.4 4.9 35.6 7.9 6 5 A N T 3 S- 0 0 60 53,-0.1 53,-0.3 72,-0.1 -1,-0.3 0.362 101.6-116.0 -80.2 6.3 6.2 35.8 11.5 7 6 A G X + 0 0 0 -3,-1.9 3,-0.6 52,-0.2 -2,-0.2 0.902 69.0 145.5 57.7 50.7 9.3 34.7 9.6 8 7 A Q T 3 S+ 0 0 83 -4,-0.3 45,-0.3 1,-0.2 -3,-0.1 0.693 74.1 55.2 -83.1 -18.7 9.7 31.3 11.3 9 8 A S T 3 S+ 0 0 93 -5,-0.4 2,-0.4 43,-0.1 -1,-0.2 0.135 74.9 134.8 -96.2 7.9 11.1 30.1 7.9 10 9 A Y < + 0 0 21 -3,-0.6 43,-0.3 -6,-0.2 -7,-0.1 -0.588 17.3 160.7 -69.9 117.7 13.8 32.7 7.8 11 10 A R + 0 0 123 -2,-0.4 2,-0.2 41,-0.1 -1,-0.1 -0.407 32.2 119.6-135.1 47.1 17.0 31.0 6.7 12 11 A G - 0 0 15 39,-0.4 -10,-0.0 2,-0.1 -2,-0.0 -0.651 68.1-118.9-108.3 174.8 19.0 33.9 5.5 13 12 A T + 0 0 94 -2,-0.2 2,-0.2 37,-0.1 36,-0.1 -0.012 61.6 131.1-108.4 21.9 22.3 35.3 6.5 14 13 A F + 0 0 78 37,-0.2 37,-2.5 1,-0.1 -2,-0.1 -0.602 25.9 173.9 -77.3 134.4 21.3 38.9 7.5 15 14 A S + 0 0 31 -2,-0.2 8,-1.8 35,-0.2 2,-0.3 0.393 34.7 100.7-135.9 19.5 22.7 39.8 11.0 16 15 A T B -B 22 0B 49 6,-0.2 59,-1.8 1,-0.1 6,-0.2 -0.740 60.2-130.1-105.8 138.3 22.0 43.5 11.9 17 16 A T B > -C 74 0C 1 4,-2.2 3,-2.5 -2,-0.3 57,-0.3 -0.400 38.1 -96.1 -84.9 162.4 19.3 44.7 14.3 18 17 A V T 3 S+ 0 0 91 55,-0.7 56,-0.1 1,-0.3 -1,-0.1 0.758 127.4 57.4 -51.7 -19.7 16.9 47.6 13.4 19 18 A T T 3 S- 0 0 72 54,-0.3 -1,-0.3 2,-0.0 3,-0.1 0.190 119.0-107.7 -99.3 17.4 19.4 49.8 15.3 20 19 A G S < S+ 0 0 53 -3,-2.5 -2,-0.1 1,-0.2 54,-0.0 0.382 76.7 136.4 71.7 -4.8 22.5 48.9 13.3 21 20 A R - 0 0 76 1,-0.1 -4,-2.2 -5,-0.1 2,-0.3 -0.238 53.7-114.3 -70.3 160.3 23.8 46.8 16.3 22 21 A T B -B 16 0B 57 -6,-0.2 43,-2.2 -3,-0.1 44,-0.4 -0.829 23.6-109.0-108.8 148.1 25.3 43.4 15.4 23 22 A b B -D 64 0D 6 -8,-1.8 2,-0.4 -2,-0.3 41,-0.2 -0.539 19.9-129.8 -83.0 143.4 24.2 39.9 16.2 24 23 A Q - 0 0 11 39,-1.4 39,-0.4 -2,-0.3 -1,-0.1 -0.651 33.9-103.2 -88.4 123.5 25.7 37.4 18.6 25 24 A S - 0 0 50 -2,-0.4 3,-0.4 1,-0.1 24,-0.3 -0.266 29.0-128.4 -51.4 139.6 26.5 33.8 17.5 26 25 A W S S+ 0 0 1 22,-2.9 -1,-0.1 1,-0.2 23,-0.1 0.543 104.2 57.7 -71.4 -17.1 23.7 31.6 18.8 27 26 A S S S+ 0 0 65 21,-0.3 2,-0.2 10,-0.1 -1,-0.2 0.749 89.3 91.9 -79.3 -36.3 26.3 29.1 20.3 28 27 A S - 0 0 42 -3,-0.4 4,-0.1 2,-0.1 6,-0.1 -0.422 60.8-156.7 -66.9 129.7 28.0 31.7 22.5 29 28 A M + 0 0 75 -2,-0.2 -1,-0.1 4,-0.1 4,-0.1 0.202 59.7 126.1 -93.2 19.4 27.0 32.4 26.1 30 29 A T S S- 0 0 98 -5,-0.2 -5,-0.1 2,-0.2 -2,-0.1 -0.997 74.3 -4.3-139.6 135.2 28.5 35.9 25.7 31 30 A P S S+ 0 0 35 0, 0.0 2,-0.4 0, 0.0 34,-0.1 -0.844 144.1 22.1 -63.8 -40.7 27.6 38.7 26.0 32 31 A H S S- 0 0 14 32,-0.5 2,-0.3 38,-0.2 -2,-0.2 -0.806 74.2-139.3 -96.7 134.5 24.2 37.2 26.8 33 32 A R + 0 0 158 -2,-0.4 2,-0.3 -4,-0.1 -4,-0.1 -0.682 33.1 158.8 -90.7 132.5 23.6 33.7 28.0 34 33 A H - 0 0 7 -2,-0.3 3,-0.1 -8,-0.1 -4,-0.0 -0.899 46.7-134.3-148.5 173.1 20.6 31.8 26.5 35 34 A Q S S+ 0 0 130 -2,-0.3 2,-1.3 1,-0.1 -6,-0.0 0.237 80.2 101.1-115.2 6.2 19.2 28.3 25.9 36 35 A R + 0 0 63 4,-0.1 -1,-0.1 2,-0.0 19,-0.1 -0.450 59.4 137.2 -92.0 63.0 18.2 29.0 22.3 37 37 A T S >> S- 0 0 6 -2,-1.3 3,-2.7 -10,-0.1 4,-2.6 -0.761 71.9-104.7-115.8 157.7 21.2 27.3 20.9 38 38 A P T 34 S+ 0 0 48 0, 0.0 6,-0.1 0, 0.0 7,-0.1 0.550 120.6 52.4 -50.8 -17.0 22.0 24.9 18.0 39 39 A E T 34 S+ 0 0 135 2,-0.1 -3,-0.0 1,-0.1 -12,-0.0 0.060 115.6 38.6-104.3 6.8 22.3 22.0 20.6 40 40 A N T <4 S+ 0 0 72 -3,-2.7 -4,-0.1 0, 0.0 3,-0.1 0.604 126.6 34.4-128.5 -35.8 18.9 22.7 22.1 41 41 A Y >< + 0 0 76 -4,-2.6 3,-1.1 1,-0.1 5,-0.4 -0.733 67.9 172.3-128.7 76.8 17.1 23.6 19.0 42 42 A P T 3 S+ 0 0 93 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.717 76.0 47.6 -59.8 -19.8 18.6 21.4 16.4 43 43 A N T 3 S+ 0 0 137 1,-0.2 0, 0.0 -3,-0.1 0, 0.0 -0.229 85.2 87.1-120.4 41.3 16.0 22.3 13.7 44 44 A D S < S- 0 0 39 -3,-1.1 9,-0.3 -6,-0.1 -1,-0.2 0.304 92.5-117.1-129.0 20.4 15.9 26.1 13.9 45 45 A G + 0 0 22 -3,-0.3 2,-5.5 1,-0.2 5,-0.1 0.545 48.9 168.9 54.5 16.7 18.7 27.2 11.6 46 46 A L + 0 0 9 -5,-0.4 2,-0.4 -9,-0.1 -1,-0.2 -0.178 16.5 162.7 -55.7 58.9 20.4 28.7 14.5 47 47 A T > - 0 0 68 -2,-5.5 3,-1.5 -3,-0.1 2,-0.0 -0.731 55.8 -52.3 -87.2 138.7 23.5 29.1 12.4 48 48 A M T 3 S- 0 0 95 -2,-0.4 -22,-2.9 1,-0.2 -21,-0.3 -0.106 110.0 -35.1 42.8-112.6 26.3 31.5 13.4 49 49 A N T 3 S+ 0 0 42 -24,-0.3 -1,-0.2 -23,-0.1 3,-0.1 0.298 92.4 140.3-124.1 -0.6 24.7 34.9 14.1 50 50 A Y < - 0 0 42 -3,-1.5 2,-0.4 1,-0.1 -35,-0.2 -0.226 62.9 -94.7 -55.2 146.4 22.0 35.0 11.5 51 51 A c + 0 0 0 -37,-2.5 -39,-0.4 9,-0.1 -37,-0.2 -0.456 57.8 165.9 -68.3 120.8 18.6 36.4 12.3 52 52 A R B -E 61 0E 8 9,-0.9 9,-3.1 -2,-0.4 -41,-0.1 -0.543 41.7-137.1-126.5 177.2 16.2 33.6 13.3 53 53 A N > + 0 0 2 -9,-0.3 3,-0.9 -45,-0.3 -2,-0.0 -0.515 35.3 157.0-141.2 63.3 12.8 33.0 14.9 54 54 A P T 3 S+ 0 0 9 0, 0.0 -1,-0.1 0, 0.0 -11,-0.1 0.771 74.8 40.2 -59.2 -27.6 13.5 30.1 17.3 55 55 A D T 3 S- 0 0 69 -3,-0.1 -47,-0.0 -19,-0.1 -2,-0.0 0.169 112.4 -99.1-122.5 32.6 10.5 31.0 19.5 56 56 A A < + 0 0 60 -3,-0.9 -49,-0.1 -49,-0.1 -48,-0.1 0.921 67.0 153.7 62.8 39.6 7.5 32.1 17.4 57 57 A D - 0 0 31 -51,-0.1 4,-0.0 2,-0.1 -49,-0.0 -0.023 60.9 -89.3 -81.1-155.3 8.1 35.8 17.8 58 58 A T S S- 0 0 104 1,-0.2 -51,-0.1 2,-0.1 -50,-0.1 0.094 97.7 -12.1-106.4 17.5 6.8 38.2 15.1 59 60 A G S S- 0 0 3 -53,-0.3 -1,-0.2 -52,-0.1 -52,-0.2 -0.713 97.4 -57.7 162.1 160.0 9.9 38.3 12.8 60 61 A P + 0 0 3 0, 0.0 14,-1.2 0, 0.0 -7,-0.3 -0.076 58.5 165.1 -57.4 149.2 13.5 37.2 13.1 61 62 A W E -EF 52 73E 3 -9,-3.1 -9,-0.9 12,-0.3 2,-0.2 -0.617 15.9-161.2-139.3-148.7 15.6 38.6 16.0 62 63 A b E - F 0 72E 0 10,-0.6 10,-1.1 -2,-0.2 2,-0.1 -0.773 29.2-100.6 165.7 148.2 18.9 37.8 17.7 63 64 A F E - F 0 71E 13 -39,-0.4 -39,-1.4 -2,-0.2 8,-0.3 -0.346 54.5-108.7 -76.2 173.4 20.7 38.6 21.0 64 65 A T B -D 23 0D 0 6,-2.6 -32,-0.5 5,-0.4 -41,-0.2 -0.726 15.4-138.5-123.1 159.3 23.4 41.4 20.7 65 66 A M S S+ 0 0 117 -43,-2.2 -42,-0.1 -2,-0.3 -1,-0.1 0.690 87.8 95.0 -72.4 -30.5 26.9 42.1 20.7 66 67 A D S > S- 0 0 39 -44,-0.4 3,-0.5 3,-0.2 -2,-0.3 -0.573 71.4-150.8 -69.0 112.4 25.9 45.1 22.8 67 68 A P T 3 S+ 0 0 102 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.714 99.5 51.5 -56.4 -19.6 26.4 43.9 26.4 68 69 A S T 3 S+ 0 0 102 1,-0.2 2,-0.7 2,-0.1 -2,-0.0 0.765 102.5 56.1 -92.8 -36.3 23.7 46.4 27.0 69 70 A I < - 0 0 57 -3,-0.5 -5,-0.4 1,-0.2 -3,-0.2 -0.912 63.2-170.7-101.9 111.7 21.0 45.3 24.5 70 71 A R - 0 0 117 -2,-0.7 -6,-2.6 1,-0.2 2,-0.3 0.993 67.4 -15.7 -63.5 -62.4 20.2 41.6 25.1 71 72 A R E +F 63 0E 78 -8,-0.3 2,-0.3 -48,-0.1 -8,-0.2 -0.794 59.3 174.4-137.8 175.9 18.1 41.2 21.9 72 73 A E E -F 62 0E 28 -10,-1.1 -10,-0.6 -2,-0.3 -3,-0.0 -0.858 39.9 -92.5-171.6 155.1 16.3 43.2 19.4 73 74 A Y E -F 61 0E 92 -2,-0.3 -55,-0.7 -12,-0.2 -54,-0.3 -0.113 48.1-108.7 -65.5-173.0 14.4 42.4 16.1 74 75 A c B -C 17 0C 9 -14,-1.2 2,-2.6 -57,-0.3 -57,-0.3 -0.768 26.3-100.0-119.1 154.9 16.4 42.5 12.8 75 76 A N S S+ 0 0 88 -59,-1.8 2,-0.4 -2,-0.3 -58,-0.1 -0.277 74.8 130.0 -77.9 62.2 16.3 45.0 9.9 76 77 A L - 0 0 34 -2,-2.6 2,-0.1 -16,-0.2 -2,-0.1 -0.879 50.3-135.8-120.1 145.2 14.1 42.8 7.7 77 78 A T - 0 0 98 -2,-0.4 2,-1.0 1,-0.1 -74,-0.9 -0.354 37.3 -93.8 -85.1 170.7 10.9 43.8 5.8 78 79 A R B a 3 0A 165 1,-0.2 -74,-0.2 -76,-0.1 -1,-0.1 -0.805 360.0 360.0 -91.8 107.4 7.8 41.7 5.8 79 80 A a 0 0 70 -76,-2.9 -75,-0.2 -2,-1.0 -1,-0.2 0.943 360.0 360.0 -43.4 360.0 8.3 39.6 2.6