==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 04-DEC-01 1KJK . COMPND 2 MOLECULE: INTEGRASE; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; . AUTHOR J.M.WOJCIAK,D.SARKAR,A.LANDY,R.T.CLUBB . 49 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4090.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 61.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 20.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 30.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 11 A D 0 0 218 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 104.8 5.3 4.9 11.3 2 12 A L - 0 0 90 1,-0.1 4,-0.0 4,-0.1 6,-0.0 -0.524 360.0 -95.9 -79.4 149.3 4.2 3.6 7.9 3 13 A P > - 0 0 30 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 -0.157 49.1 -90.6 -60.6 158.7 0.4 3.2 7.3 4 14 A P T 3 S+ 0 0 82 0, 0.0 3,-0.1 0, 0.0 38,-0.0 -0.271 108.3 21.7 -69.6 156.7 -1.2 -0.3 7.9 5 15 A N T 3 S+ 0 0 53 1,-0.2 12,-1.5 11,-0.1 2,-0.4 0.281 105.5 102.8 70.8 -17.3 -1.5 -2.9 5.2 6 16 A L E < +A 16 0A 6 -3,-0.8 2,-0.2 10,-0.2 10,-0.2 -0.776 48.1 173.1 -99.9 142.7 1.4 -1.1 3.4 7 17 A Y E -A 15 0A 114 8,-2.6 8,-2.2 -2,-0.4 2,-0.3 -0.758 20.9-131.0-134.3-177.8 5.0 -2.4 3.5 8 18 A I E -A 14 0A 72 6,-0.2 6,-0.2 -2,-0.2 2,-0.2 -0.989 16.1-125.3-140.0 148.9 8.4 -1.6 2.0 9 19 A R > - 0 0 120 4,-2.8 3,-3.4 -2,-0.3 4,-0.1 -0.575 32.8-108.7 -91.1 156.8 11.1 -3.7 0.2 10 20 A N T 3 S+ 0 0 175 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.721 122.6 62.5 -57.4 -14.4 14.7 -3.8 1.3 11 21 A N T 3 S- 0 0 112 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.505 123.2-107.9 -88.7 -2.1 15.3 -1.7 -1.9 12 22 A G S < S+ 0 0 26 -3,-3.4 2,-0.4 1,-0.3 -2,-0.2 0.622 72.5 144.4 87.0 12.6 13.1 1.1 -0.5 13 23 A Y - 0 0 98 -4,-0.1 -4,-2.8 16,-0.0 -1,-0.3 -0.708 44.8-135.7 -86.5 130.5 10.3 0.3 -2.9 14 24 A Y E +AB 8 28A 20 14,-2.4 13,-1.6 -2,-0.4 14,-0.8 -0.571 26.7 177.6 -84.2 148.9 6.8 0.8 -1.3 15 25 A C E -AB 7 26A 7 -8,-2.2 -8,-2.6 -2,-0.2 2,-0.3 -0.981 19.8-143.0-152.7 138.7 4.1 -1.8 -1.9 16 26 A Y E -AB 6 25A 9 9,-1.4 9,-1.3 -2,-0.3 2,-0.6 -0.740 15.7-136.9-100.9 150.6 0.5 -2.3 -0.8 17 27 A R E - B 0 24A 96 -12,-1.5 7,-0.2 -2,-0.3 6,-0.1 -0.899 12.6-146.2-111.3 113.0 -1.0 -5.7 0.1 18 28 A D > - 0 0 32 5,-1.4 4,-0.9 -2,-0.6 -13,-0.0 -0.530 5.1-146.4 -74.1 139.7 -4.6 -6.4 -1.2 19 29 A P T 4 S+ 0 0 92 0, 0.0 -1,-0.1 0, 0.0 -14,-0.0 0.597 94.0 56.0 -82.8 -10.8 -6.7 -8.6 1.2 20 30 A R T 4 S+ 0 0 164 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 0.871 126.1 17.5 -89.1 -38.8 -8.6 -10.3 -1.7 21 31 A T T 4 S- 0 0 82 2,-0.1 3,-0.1 0, 0.0 -1,-0.1 0.539 89.0-143.7-106.5 -11.1 -5.6 -11.6 -3.6 22 32 A G < + 0 0 44 -4,-0.9 -2,-0.0 1,-0.2 0, 0.0 0.464 62.1 124.1 63.7 -6.4 -3.2 -11.3 -0.7 23 33 A K - 0 0 140 1,-0.1 -5,-1.4 -6,-0.1 2,-0.2 -0.147 62.2-111.4 -75.5 179.7 -0.6 -10.3 -3.5 24 34 A E E -B 17 0A 84 -7,-0.2 2,-0.4 -3,-0.1 -7,-0.2 -0.586 16.0-138.6-107.9 173.0 1.3 -7.0 -3.4 25 35 A F E -B 16 0A 99 -9,-1.3 -9,-1.4 -2,-0.2 2,-0.3 -0.951 15.3-133.0-136.6 116.5 1.1 -3.9 -5.7 26 36 A G E +B 15 0A 80 -2,-0.4 -11,-0.2 -11,-0.2 -13,-0.0 -0.512 35.5 160.4 -69.8 125.8 4.2 -2.0 -6.8 27 37 A L E - 0 0 57 -13,-1.6 2,-0.3 -2,-0.3 -1,-0.2 0.768 46.0 -99.0-110.4 -59.7 3.8 1.7 -6.3 28 38 A G E -B 14 0A 20 -14,-0.8 -14,-2.4 1,-0.0 -1,-0.3 -0.948 35.6 -75.6 157.9-176.1 7.2 3.4 -6.4 29 39 A R S S+ 0 0 155 -2,-0.3 2,-0.9 -16,-0.2 3,-0.1 0.341 97.4 101.2 -93.1 7.8 9.9 4.7 -4.0 30 40 A D > - 0 0 92 1,-0.2 4,-3.0 -16,-0.1 5,-0.3 -0.777 55.3-165.9 -96.0 102.0 7.8 7.8 -3.3 31 41 A R H > S+ 0 0 118 -2,-0.9 4,-1.3 1,-0.2 5,-0.2 0.709 89.5 63.9 -58.8 -12.9 6.1 7.4 0.1 32 42 A R H > S+ 0 0 170 2,-0.2 4,-1.5 3,-0.2 -1,-0.2 0.971 111.7 28.6 -75.6 -56.8 4.1 10.4 -1.1 33 43 A I H > S+ 0 0 100 -3,-0.2 4,-1.8 2,-0.2 5,-0.2 0.874 123.8 52.3 -73.3 -34.7 2.4 8.7 -4.1 34 44 A A H X S+ 0 0 1 -4,-3.0 4,-2.7 2,-0.2 5,-0.2 0.990 110.4 44.9 -65.6 -57.7 2.6 5.3 -2.4 35 45 A I H X S+ 0 0 51 -4,-1.3 4,-2.6 -5,-0.3 5,-0.2 0.895 108.2 62.0 -54.5 -36.8 0.9 6.3 0.8 36 46 A T H X S+ 0 0 66 -4,-1.5 4,-1.6 -5,-0.2 -1,-0.2 0.975 109.3 38.5 -53.7 -56.8 -1.7 8.2 -1.3 37 47 A E H X S+ 0 0 84 -4,-1.8 4,-2.8 1,-0.2 5,-0.3 0.924 111.4 59.1 -62.1 -43.0 -2.9 5.0 -3.0 38 48 A A H X S+ 0 0 0 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.925 103.3 53.8 -53.5 -42.7 -2.6 3.0 0.3 39 49 A I H X S+ 0 0 87 -4,-2.6 4,-1.8 2,-0.2 -1,-0.2 0.954 109.2 46.4 -59.3 -48.3 -5.0 5.4 1.9 40 50 A Q H X S+ 0 0 106 -4,-1.6 4,-1.3 1,-0.2 -1,-0.2 0.930 113.4 50.2 -61.4 -39.7 -7.6 4.9 -0.9 41 51 A A H X S+ 0 0 27 -4,-2.8 4,-1.2 1,-0.2 -1,-0.2 0.869 106.5 56.2 -65.9 -33.1 -7.0 1.1 -0.5 42 52 A N H < S+ 0 0 40 -4,-2.5 4,-0.3 -5,-0.3 -1,-0.2 0.870 101.5 56.2 -67.9 -33.6 -7.5 1.5 3.3 43 53 A I H >X S+ 0 0 105 -4,-1.8 3,-1.1 1,-0.2 4,-0.8 0.871 104.3 53.8 -67.2 -32.1 -11.0 3.0 2.7 44 54 A E H 3X S+ 0 0 92 -4,-1.3 4,-3.3 1,-0.3 3,-0.4 0.839 93.9 68.7 -71.3 -29.7 -11.9 -0.1 0.7 45 55 A L H 3< S+ 0 0 83 -4,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.664 106.0 43.5 -63.7 -9.3 -10.9 -2.3 3.7 46 56 A F H <4 S+ 0 0 183 -3,-1.1 -1,-0.2 -4,-0.3 -2,-0.2 0.636 119.2 40.2-106.7 -22.0 -14.0 -0.7 5.4 47 57 A S H < S- 0 0 79 -4,-0.8 -2,-0.2 -3,-0.4 -3,-0.2 0.657 102.2-141.9 -99.4 -19.8 -16.4 -1.0 2.4 48 58 A G < 0 0 34 -4,-3.3 -2,-0.1 -5,-0.2 -3,-0.1 0.082 360.0 360.0 76.7 163.3 -15.2 -4.5 1.3 49 59 A H 0 0 195 -4,-0.1 -1,-0.1 0, 0.0 -4,-0.1 -0.125 360.0 360.0 -54.9 360.0 -14.9 -5.5 -2.4