==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 10-JUN-09 2KJV . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S6; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR A.OHMAN,M.OLIVEBERG,T.OMAN . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8501.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 10.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 23.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 182 0, 0.0 2,-0.3 0, 0.0 65,-0.0 0.000 360.0 360.0 360.0 106.8 -8.5 -13.4 3.7 2 2 A R - 0 0 123 65,-0.3 65,-0.9 2,-0.0 2,-0.4 -0.983 360.0 -94.8-178.5-177.0 -5.5 -11.2 2.9 3 3 A R - 0 0 118 -2,-0.3 90,-0.9 63,-0.2 2,-0.3 -0.928 32.0-176.8-122.9 146.8 -4.0 -7.7 3.0 4 4 A Y E -A 92 0A 6 -2,-0.4 61,-0.8 88,-0.2 2,-0.4 -0.903 24.1-118.5-136.0 166.2 -4.1 -4.9 0.4 5 5 A E E -A 91 0A 29 86,-1.2 86,-1.1 -2,-0.3 2,-0.5 -0.888 21.5-142.1-109.4 135.5 -2.7 -1.3 0.0 6 6 A V E -A 90 0A 24 57,-0.4 2,-0.6 -2,-0.4 57,-0.2 -0.818 13.4-170.6 -98.4 128.6 -5.1 1.6 -0.4 7 7 A N E +A 89 0A 50 82,-1.7 82,-1.4 -2,-0.5 2,-0.4 -0.877 16.1 162.2-119.6 102.1 -4.0 4.4 -2.8 8 8 A I - 0 0 6 -2,-0.6 2,-0.6 53,-0.3 53,-0.5 -0.962 23.0-156.7-122.6 134.2 -6.2 7.5 -2.7 9 9 A V - 0 0 53 78,-0.4 77,-1.2 -2,-0.4 78,-0.4 -0.912 14.6-171.8-110.6 118.1 -5.3 11.0 -4.0 10 10 A L B -B 85 0B 45 -2,-0.6 49,-0.2 49,-0.4 75,-0.2 -0.802 39.5 -88.7-108.7 151.4 -7.2 13.9 -2.4 11 11 A N > - 0 0 60 73,-1.0 2,-1.5 -2,-0.3 3,-0.8 -0.391 34.7-154.0 -58.8 110.1 -7.1 17.6 -3.5 12 12 A P T 3 + 0 0 32 0, 0.0 -1,-0.2 0, 0.0 46,-0.1 -0.223 68.9 101.3 -80.9 47.9 -4.2 19.0 -1.5 13 13 A N T 3 + 0 0 142 -2,-1.5 -2,-0.1 2,-0.0 6,-0.1 0.589 48.5 109.4-106.2 -14.9 -5.7 22.5 -1.6 14 14 A L S < S- 0 0 35 -3,-0.8 0, 0.0 1,-0.1 0, 0.0 -0.230 70.8-116.8 -60.3 151.4 -7.2 22.6 2.0 15 15 A D > - 0 0 83 1,-0.1 4,-2.5 4,-0.0 5,-0.2 -0.089 34.5 -90.3 -78.6-174.9 -5.4 24.9 4.4 16 16 A Q H > S+ 0 0 162 2,-0.2 4,-1.9 1,-0.2 -1,-0.1 0.959 126.8 49.1 -65.1 -48.8 -3.6 23.7 7.6 17 17 A S H > S+ 0 0 101 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.946 115.3 44.3 -57.5 -46.3 -6.7 24.0 9.8 18 18 A Q H >> S+ 0 0 87 1,-0.2 4,-1.2 2,-0.2 3,-0.6 0.921 107.6 59.3 -65.9 -40.1 -8.8 22.0 7.3 19 19 A L H 3X S+ 0 0 53 -4,-2.5 4,-1.2 1,-0.2 3,-0.5 0.885 98.5 60.0 -56.5 -35.9 -6.0 19.5 6.8 20 20 A A H 3X S+ 0 0 48 -4,-1.9 4,-1.1 1,-0.2 3,-0.4 0.910 98.3 57.4 -60.4 -39.7 -6.2 18.7 10.5 21 21 A L H S+ 0 0 44 -4,-1.4 5,-1.4 1,-0.3 -1,-0.2 0.952 108.6 43.3 -55.0 -42.6 -10.2 2.9 7.9 31 31 A E H ><5S+ 0 0 110 -4,-0.8 3,-2.9 -3,-0.4 -1,-0.3 0.889 105.1 62.5 -69.3 -37.4 -13.1 1.6 10.0 32 32 A N H 3<5S+ 0 0 95 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.908 99.4 56.1 -55.2 -37.6 -15.5 2.4 7.2 33 33 A Y T 3<5S- 0 0 23 -4,-2.3 -1,-0.3 -5,-0.2 -2,-0.2 0.486 109.1-130.4 -73.0 0.5 -13.6 -0.1 5.1 34 34 A G T < 5S+ 0 0 58 -3,-2.9 2,-0.3 1,-0.2 -3,-0.2 0.787 70.6 123.9 55.8 21.7 -14.3 -2.6 7.9 35 35 A A < - 0 0 5 -5,-1.4 2,-0.4 32,-0.1 -1,-0.2 -0.833 60.6-129.9-113.5 152.9 -10.5 -3.3 7.6 36 36 A R - 0 0 160 -2,-0.3 2,-0.6 30,-0.1 30,-0.2 -0.821 20.8-125.0-102.2 138.9 -7.9 -3.1 10.4 37 37 A V + 0 0 62 -2,-0.4 28,-0.2 1,-0.2 3,-0.1 -0.693 25.8 179.1 -84.1 118.8 -4.7 -1.1 9.9 38 38 A E S S+ 0 0 105 26,-3.5 2,-0.3 -2,-0.6 -1,-0.2 0.768 72.4 4.2 -88.7 -26.1 -1.6 -3.2 10.5 39 39 A K - 0 0 101 25,-0.5 25,-1.1 2,-0.0 2,-0.6 -0.995 63.9-139.1-155.8 149.6 0.9 -0.4 9.7 40 40 A V E -C 63 0C 92 -2,-0.3 2,-0.5 23,-0.2 23,-0.2 -0.932 17.2-170.2-117.2 117.8 0.8 3.3 8.8 41 41 A E E -C 62 0C 90 21,-2.0 21,-1.1 -2,-0.6 2,-0.6 -0.884 11.1-148.9-107.5 132.1 3.1 4.6 6.1 42 42 A E E -C 61 0C 153 -2,-0.5 19,-0.1 1,-0.2 -2,-0.0 -0.856 14.3-178.5-101.9 119.1 3.4 8.4 5.5 43 43 A L - 0 0 50 -2,-0.6 -1,-0.2 17,-0.5 18,-0.1 0.904 11.9-166.3 -81.4 -42.0 4.2 9.5 1.9 44 44 A G - 0 0 45 16,-0.2 15,-0.1 2,-0.0 -2,-0.1 0.960 17.8-152.5 56.0 51.3 4.4 13.2 2.6 45 45 A L - 0 0 54 13,-0.2 2,-0.7 1,-0.1 12,-0.1 0.056 14.4-114.0 -46.5 167.6 4.2 14.1 -1.1 46 46 A R - 0 0 133 10,-0.3 -1,-0.1 0, 0.0 2,-0.1 -0.846 22.4-143.3-114.3 100.2 5.9 17.4 -2.1 47 47 A R - 0 0 143 -2,-0.7 2,-0.2 10,-0.1 8,-0.0 -0.362 22.5-126.3 -59.9 130.3 3.4 20.0 -3.4 48 48 A L - 0 0 39 7,-0.1 4,-0.1 1,-0.1 -1,-0.1 -0.530 19.8-139.7 -79.7 146.1 5.1 22.0 -6.2 49 49 A A - 0 0 78 2,-0.3 -1,-0.1 -2,-0.2 0, 0.0 0.003 51.8 -57.5 -87.1-160.8 5.2 25.8 -5.9 50 50 A Y S S+ 0 0 229 2,-0.1 2,-0.1 0, 0.0 -2,-0.1 0.944 127.1 59.7 -43.7 -62.7 4.6 28.3 -8.8 51 51 A P S S- 0 0 101 0, 0.0 2,-0.4 0, 0.0 -2,-0.3 -0.365 82.7-145.4 -67.1 143.8 7.4 26.8 -10.8 52 52 A I + 0 0 138 1,-0.1 3,-0.1 -4,-0.1 -2,-0.1 -0.932 51.4 109.7-117.2 136.1 6.9 23.1 -11.7 53 53 A A + 0 0 98 -2,-0.4 -1,-0.1 2,-0.2 -5,-0.0 0.229 60.0 71.7-166.1 -46.0 9.8 20.5 -12.0 54 54 A K S S- 0 0 133 1,-0.2 3,-0.1 -7,-0.0 -6,-0.1 0.203 100.9 -50.9 -67.9-161.1 9.7 18.0 -9.1 55 55 A D S S- 0 0 102 1,-0.1 -2,-0.2 -3,-0.1 -1,-0.2 -0.226 72.2 -82.7 -71.0 167.6 7.0 15.3 -8.8 56 56 A P - 0 0 90 0, 0.0 -10,-0.3 0, 0.0 -1,-0.1 -0.346 48.2-107.8 -69.9 149.6 3.3 16.1 -9.1 57 57 A Q + 0 0 101 -12,-0.1 2,-0.3 -3,-0.1 -10,-0.1 -0.462 64.2 106.2 -77.4 151.4 1.5 17.3 -6.0 58 58 A G - 0 0 7 -2,-0.1 2,-0.4 -46,-0.1 -13,-0.2 -0.951 61.9 -97.3 162.5 179.4 -0.9 15.0 -4.2 59 59 A Y - 0 0 85 -2,-0.3 2,-0.6 -49,-0.2 -49,-0.4 -0.949 29.6-176.4-132.0 116.0 -1.4 12.7 -1.1 60 60 A F - 0 0 60 -2,-0.4 -17,-0.5 -51,-0.1 2,-0.4 -0.929 6.2-166.2-115.1 120.1 -0.8 9.0 -1.2 61 61 A L E -C 42 0C 18 -2,-0.6 2,-0.5 -53,-0.5 -53,-0.3 -0.811 1.5-165.0-104.4 143.8 -1.5 6.9 1.9 62 62 A W E +C 41 0C 62 -21,-1.1 -21,-2.0 -2,-0.4 2,-0.4 -0.952 16.7 162.0-130.2 116.2 -0.3 3.3 2.3 63 63 A Y E -C 40 0C 33 -2,-0.5 2,-0.5 -23,-0.2 -57,-0.4 -0.976 36.1-125.5-133.7 148.6 -1.8 1.0 5.0 64 64 A Q + 0 0 17 -25,-1.1 -26,-3.5 -2,-0.4 -25,-0.5 -0.782 38.2 179.6 -92.6 125.5 -1.9 -2.8 5.6 65 65 A V - 0 0 12 -61,-0.8 2,-0.3 -2,-0.5 -28,-0.1 -0.739 31.1-138.9-122.0 173.4 -5.4 -4.1 6.0 66 66 A E + 0 0 107 -30,-0.2 -63,-0.2 -2,-0.2 -30,-0.1 -0.664 52.0 127.1-131.8 77.1 -7.2 -7.4 6.6 67 67 A M - 0 0 5 -65,-0.9 -65,-0.3 -2,-0.3 -32,-0.1 -0.940 61.1 -95.9-134.1 157.6 -10.3 -7.5 4.4 68 68 A P - 0 0 57 0, 0.0 4,-0.4 0, 0.0 -2,-0.0 -0.306 30.2-126.0 -67.9 150.6 -11.9 -9.8 1.9 69 69 A E S S+ 0 0 94 1,-0.2 4,-0.5 2,-0.2 3,-0.1 0.698 106.2 58.0 -73.5 -17.3 -11.2 -9.0 -1.8 70 70 A D S >> S+ 0 0 89 1,-0.2 4,-0.6 2,-0.2 3,-0.6 0.887 102.6 49.7 -81.8 -38.0 -14.9 -9.0 -2.6 71 71 A R H 3> S+ 0 0 147 1,-0.2 4,-2.3 2,-0.2 5,-0.3 0.574 92.3 83.6 -76.5 -4.7 -15.9 -6.2 -0.2 72 72 A V H 3> S+ 0 0 21 -4,-0.4 4,-2.9 1,-0.2 5,-0.3 0.943 88.2 49.2 -64.6 -44.9 -13.1 -4.1 -1.6 73 73 A N H <> S+ 0 0 106 -3,-0.6 4,-2.2 -4,-0.5 -1,-0.2 0.891 110.8 52.6 -62.4 -36.0 -15.1 -2.8 -4.5 74 74 A D H X S+ 0 0 86 -4,-0.6 4,-1.0 2,-0.2 -2,-0.2 0.967 116.3 36.2 -65.7 -51.4 -18.0 -2.0 -2.1 75 75 A L H X S+ 0 0 15 -4,-2.3 4,-1.4 1,-0.2 3,-0.4 0.887 118.1 52.6 -70.3 -35.2 -15.8 0.1 0.3 76 76 A A H X S+ 0 0 11 -4,-2.9 4,-2.0 -5,-0.3 5,-0.3 0.908 100.9 62.2 -65.4 -38.9 -13.7 1.5 -2.6 77 77 A R H X S+ 0 0 131 -4,-2.2 4,-1.0 -5,-0.3 -1,-0.2 0.855 102.1 51.4 -56.0 -34.5 -17.0 2.5 -4.3 78 78 A E H X S+ 0 0 83 -4,-1.0 4,-1.0 -3,-0.4 -1,-0.2 0.917 105.1 55.4 -71.5 -41.6 -17.6 4.9 -1.4 79 79 A L H >< S+ 0 0 36 -4,-1.4 3,-1.0 1,-0.2 6,-0.2 0.946 109.1 46.1 -57.6 -48.4 -14.2 6.5 -1.6 80 80 A R H 3< S+ 0 0 111 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.789 107.7 59.6 -66.9 -24.4 -14.7 7.5 -5.3 81 81 A I H 3< S+ 0 0 107 -4,-1.0 -1,-0.2 -5,-0.3 -2,-0.2 0.702 87.2 97.1 -77.6 -17.4 -18.2 8.8 -4.5 82 82 A R S << S- 0 0 131 -3,-1.0 -3,-0.0 -4,-1.0 0, 0.0 -0.278 78.6-127.4 -70.2 159.8 -16.8 11.3 -2.0 83 83 A D S S+ 0 0 151 1,-0.2 -1,-0.1 3,-0.0 -4,-0.0 0.910 107.4 45.2 -73.7 -44.9 -16.2 14.9 -3.0 84 84 A N S S+ 0 0 59 -74,-0.1 -73,-1.0 2,-0.0 2,-0.3 0.758 98.1 86.3 -73.8 -22.2 -12.6 15.1 -1.8 85 85 A V B -B 10 0B 14 -6,-0.2 -75,-0.2 -75,-0.2 3,-0.1 -0.617 51.9-177.4 -81.5 135.4 -11.7 11.8 -3.4 86 86 A R - 0 0 152 -77,-1.2 2,-0.3 1,-0.3 -1,-0.2 0.794 65.5 -15.0 -99.7 -36.2 -10.7 11.9 -7.1 87 87 A R - 0 0 143 -78,-0.4 -78,-0.4 -8,-0.0 2,-0.4 -0.967 58.0-124.0-157.3 172.3 -10.2 8.2 -7.8 88 88 A V - 0 0 41 -2,-0.3 2,-0.6 -80,-0.1 -80,-0.2 -0.971 18.8-170.7-130.2 121.8 -9.7 4.8 -6.0 89 89 A M E -A 7 0A 105 -82,-1.4 -82,-1.7 -2,-0.4 2,-0.6 -0.920 3.3-175.8-115.3 116.5 -6.7 2.5 -6.7 90 90 A V E +A 6 0A 70 -2,-0.6 2,-0.3 -84,-0.2 -84,-0.1 -0.922 9.2 173.7-112.5 120.6 -6.8 -1.0 -5.2 91 91 A V E -A 5 0A 64 -86,-1.1 -86,-1.2 -2,-0.6 2,-0.3 -0.904 33.4-110.0-124.8 154.3 -3.7 -3.2 -5.7 92 92 A K E -A 4 0A 115 -2,-0.3 2,-1.0 -88,-0.2 -88,-0.2 -0.592 31.5-121.1 -81.3 140.1 -2.7 -6.6 -4.3 93 93 A S + 0 0 41 -90,-0.9 2,-0.2 -2,-0.3 -90,-0.2 -0.678 63.3 116.8 -83.8 104.6 0.1 -6.7 -1.7 94 94 A Q - 0 0 145 -2,-1.0 -90,-0.0 1,-0.1 0, 0.0 -0.858 67.1 -51.3-151.1-174.0 2.8 -8.9 -3.2 95 95 A E - 0 0 139 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.276 62.1-103.8 -65.6 155.8 6.5 -8.9 -4.3 96 96 A P - 0 0 101 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.190 31.8-148.6 -72.9 169.1 7.5 -6.2 -6.8 97 97 A F + 0 0 193 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.970 27.9 143.0-146.3 129.4 8.1 -7.0 -10.5 98 98 A L - 0 0 116 -2,-0.4 2,-0.7 3,-0.0 3,-0.0 -0.969 43.8-119.8-162.9 145.6 10.5 -5.4 -13.1 99 99 A A + 0 0 94 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.787 59.9 121.3 -93.7 113.7 12.7 -6.6 -16.0 100 100 A N 0 0 142 -2,-0.7 -1,-0.1 1,-0.1 0, 0.0 0.065 360.0 360.0-159.7 33.4 16.4 -5.9 -15.4 101 101 A A 0 0 174 -3,-0.0 -1,-0.1 0, 0.0 -3,-0.0 -0.652 360.0 360.0-139.9 360.0 18.3 -9.2 -15.6