==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-APR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 10-JUN-09 2KJX . COMPND 2 MOLECULE: JUMPING TRANSLOCATION BREAKPOINT PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.ROUSSEAU,A.LINGEL,B.PAN,W.J.FAIRBROTHER,F.BAZAN . 65 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5332.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 24.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -86.2 25.6 -8.4 2.3 2 2 A S - 0 0 130 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.908 360.0-116.4 -62.9 -43.3 24.0 -11.2 4.3 3 3 A G - 0 0 59 1,-0.0 -1,-0.0 2,-0.0 2,-0.0 0.830 29.8-154.8 105.2 53.7 20.9 -11.1 2.1 4 4 A M - 0 0 151 1,-0.1 2,-0.6 2,-0.0 -1,-0.0 -0.323 8.2-141.6 -60.4 136.3 18.0 -10.0 4.3 5 5 A K + 0 0 153 2,-0.0 2,-0.4 -2,-0.0 -1,-0.1 -0.900 27.6 167.4-107.3 113.6 14.6 -11.2 3.0 6 6 A E + 0 0 158 -2,-0.6 -2,-0.0 0, 0.0 0, 0.0 -0.978 4.9 158.9-130.1 121.2 11.7 -8.8 3.4 7 7 A F - 0 0 136 -2,-0.4 -2,-0.0 1,-0.1 2,-0.0 -0.879 32.0-114.6-135.0 166.8 8.4 -9.2 1.6 8 8 A P - 0 0 16 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.041 24.1-116.7 -87.1-166.9 4.7 -8.0 2.0 9 9 A a S >> S+ 0 0 1 2,-0.1 4,-1.6 3,-0.1 3,-0.7 0.685 107.3 63.3-105.1 -27.6 1.5 -9.9 2.8 10 10 A W T 34 S+ 0 0 60 1,-0.2 5,-0.2 2,-0.2 -1,-0.1 0.702 97.5 60.2 -70.3 -19.3 -0.3 -9.2 -0.4 11 11 A L T 34 S+ 0 0 106 1,-0.2 -1,-0.2 3,-0.1 -2,-0.1 0.717 122.6 21.2 -80.2 -22.0 2.4 -11.2 -2.2 12 12 A V T <4 S+ 0 0 103 -3,-0.7 2,-0.3 -4,-0.1 -2,-0.2 0.368 129.5 42.3-123.6 -1.9 1.6 -14.3 -0.2 13 13 A E S < S- 0 0 22 -4,-1.6 2,-0.4 36,-0.0 -1,-0.0 -0.897 91.2 -87.0-139.8 169.4 -1.9 -13.5 0.9 14 14 A E - 0 0 152 -2,-0.3 33,-1.8 -3,-0.1 34,-0.5 -0.660 45.8-163.7 -81.8 128.3 -5.2 -12.1 -0.4 15 15 A F E -A 46 0A 82 -2,-0.4 2,-0.4 31,-0.2 31,-0.2 -0.786 11.1-157.5-113.8 157.6 -5.3 -8.3 -0.1 16 16 A V E -A 45 0A 89 29,-1.7 29,-1.7 -2,-0.3 2,-1.2 -0.956 25.9-122.4-138.1 116.7 -8.2 -5.8 -0.3 17 17 A V E +A 44 0A 65 -2,-0.4 27,-0.2 27,-0.2 3,-0.2 -0.372 42.8 161.2 -59.0 93.7 -7.8 -2.1 -1.1 18 18 A A E S+ 0 0 58 25,-1.4 2,-0.4 -2,-1.2 -1,-0.2 0.753 70.2 33.6 -86.3 -27.5 -9.4 -0.6 2.0 19 19 A E E S-A 43 0A 109 24,-1.3 24,-2.9 -3,-0.2 -1,-0.3 -0.933 87.8-126.9-134.7 110.5 -7.8 2.8 1.5 20 20 A E E - 0 0 97 -2,-0.4 2,-0.2 22,-0.2 21,-0.1 -0.024 39.3 -93.5 -48.9 156.1 -7.2 4.2 -2.0 21 21 A b E - 0 0 2 21,-0.2 21,-0.3 19,-0.1 -1,-0.1 -0.529 47.1-176.5 -79.2 142.5 -3.7 5.3 -2.8 22 22 A S E -A 41 0A 70 19,-1.7 19,-2.7 -2,-0.2 35,-0.1 -0.894 34.1 -67.1-135.0 164.5 -2.7 8.9 -2.3 23 23 A P E -A 40 0A 80 0, 0.0 2,-0.5 0, 0.0 17,-0.2 0.058 47.4-123.3 -46.5 157.8 0.3 11.2 -2.8 24 24 A c - 0 0 23 15,-0.7 5,-0.2 11,-0.1 6,-0.0 -0.943 20.8-131.9-114.3 120.2 3.4 10.7 -0.8 25 25 A S > - 0 0 89 -2,-0.5 4,-2.3 1,-0.1 5,-0.5 0.178 43.8 -81.1 -54.0-177.7 4.8 13.6 1.3 26 26 A N H > S+ 0 0 152 1,-0.2 4,-0.7 2,-0.2 -1,-0.1 0.848 136.9 27.3 -58.1 -35.1 8.5 14.6 1.2 27 27 A F H > S+ 0 0 166 2,-0.2 4,-1.4 3,-0.1 5,-0.3 0.729 113.0 66.7 -97.5 -29.0 9.2 11.7 3.7 28 28 A R H > S+ 0 0 75 1,-0.2 4,-1.5 2,-0.2 -2,-0.2 0.901 115.1 29.4 -58.8 -43.1 6.3 9.5 2.6 29 29 A A H < S+ 0 0 34 -4,-2.3 6,-0.3 2,-0.2 -1,-0.2 0.858 113.7 61.9 -85.0 -40.1 7.8 9.0 -0.8 30 30 A K H < S+ 0 0 183 -4,-0.7 -2,-0.2 -5,-0.5 -1,-0.2 0.733 117.8 32.7 -58.4 -22.2 11.5 9.3 0.2 31 31 A T H < S+ 0 0 98 -4,-1.4 -1,-0.2 1,-0.1 -2,-0.2 0.781 113.9 62.7-102.3 -39.2 10.9 6.3 2.5 32 32 A T >< - 0 0 12 -4,-1.5 3,-0.8 -5,-0.3 -1,-0.1 -0.780 61.1-160.4 -94.0 129.9 8.4 4.3 0.4 33 33 A P G > S+ 0 0 101 0, 0.0 3,-1.3 0, 0.0 -1,-0.1 0.695 84.6 77.7 -78.9 -20.0 9.4 3.0 -3.0 34 34 A E G 3>>S+ 0 0 50 1,-0.3 5,-0.8 20,-0.2 4,-0.7 0.662 83.0 68.3 -63.3 -15.3 5.8 2.6 -4.1 35 35 A c G <45S+ 0 0 17 -3,-0.8 -1,-0.3 -6,-0.3 -11,-0.1 0.052 81.1 82.5 -92.3 25.0 5.8 6.4 -4.6 36 36 A G T <45S+ 0 0 65 -3,-1.3 -1,-0.2 4,-0.1 -2,-0.1 0.883 99.2 24.0 -94.3 -48.7 8.2 6.1 -7.6 37 37 A P T 45S+ 0 0 114 0, 0.0 -2,-0.1 0, 0.0 -3,-0.1 0.917 146.3 9.2 -84.2 -48.8 6.0 5.2 -10.6 38 38 A T T <5S- 0 0 43 -4,-0.7 -3,-0.2 2,-0.2 21,-0.1 0.754 82.3-143.7-100.8 -35.1 2.6 6.6 -9.4 39 39 A G < + 0 0 17 -5,-0.8 -15,-0.7 1,-0.2 2,-0.5 0.414 69.6 106.3 82.8 -3.1 3.6 8.5 -6.3 40 40 A Y E -A 23 0A 77 17,-0.4 17,-1.2 -6,-0.3 2,-0.5 -0.940 53.2-164.0-113.0 127.1 0.3 7.4 -4.8 41 41 A V E -AB 22 56A 15 -19,-2.7 -19,-1.7 -2,-0.5 15,-0.3 -0.947 3.3-163.4-117.7 128.7 0.3 4.7 -2.1 42 42 A E E - B 0 55A 6 13,-1.8 13,-1.2 -2,-0.5 2,-0.5 -0.382 21.7-118.4 -97.1 177.3 -2.8 2.8 -0.9 43 43 A K E -AB 19 54A 59 -24,-2.9 -25,-1.4 11,-0.2 -24,-1.3 -0.861 31.7-179.2-123.8 95.8 -3.5 0.7 2.1 44 44 A I E -AB 17 53A 0 9,-1.5 9,-3.2 -2,-0.5 2,-0.3 -0.828 12.8-151.3 -99.2 129.6 -4.4 -2.9 1.3 45 45 A T E -AB 16 52A 14 -29,-1.7 -29,-1.7 -2,-0.5 2,-0.6 -0.771 10.7-132.9-100.3 143.4 -5.2 -5.3 4.2 46 46 A a E >> -AB 15 51A 0 5,-2.0 5,-1.0 -2,-0.3 4,-0.8 -0.850 3.5-147.3 -99.8 119.6 -4.5 -9.1 4.0 47 47 A S T 45S+ 0 0 100 -33,-1.8 2,-1.0 -2,-0.6 3,-0.3 0.792 88.0 81.8 -50.6 -28.2 -7.4 -11.4 5.1 48 48 A S T 45S- 0 0 69 -34,-0.5 3,-0.2 1,-0.2 -2,-0.1 -0.719 124.3 -18.2 -85.9 101.9 -4.6 -13.6 6.3 49 49 A S T 45S- 0 0 97 -2,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.556 104.4 -96.4 78.8 9.8 -3.5 -12.3 9.7 50 50 A K T <5 + 0 0 156 -4,-0.8 2,-0.5 -3,-0.3 -3,-0.2 0.942 64.8 173.9 42.5 73.8 -5.2 -9.0 8.8 51 51 A R E < -B 46 0A 120 -5,-1.0 -5,-2.0 -3,-0.2 2,-0.6 -0.955 23.8-150.8-118.0 122.9 -2.1 -7.2 7.6 52 52 A N E -B 45 0A 73 -2,-0.5 -7,-0.3 -7,-0.3 2,-0.2 -0.813 18.9-173.2 -94.7 118.9 -2.1 -3.7 6.1 53 53 A E E -B 44 0A 66 -9,-3.2 -9,-1.5 -2,-0.6 2,-0.9 -0.703 29.1-114.1-108.8 161.7 0.6 -3.1 3.5 54 54 A F E +B 43 0A 76 -2,-0.2 -11,-0.2 -11,-0.2 -20,-0.2 -0.798 47.2 166.5 -98.8 96.9 1.7 0.0 1.7 55 55 A K E -B 42 0A 42 -13,-1.2 -13,-1.8 -2,-0.9 2,-0.4 -0.469 31.4-119.0-102.5 176.1 1.0 -0.5 -2.0 56 56 A S E +B 41 0A 23 -15,-0.3 2,-0.3 -2,-0.2 -15,-0.2 -0.959 31.5 173.4-120.7 135.9 0.8 1.8 -5.0 57 57 A b - 0 0 9 -17,-1.2 2,-0.6 -2,-0.4 -17,-0.4 -0.808 37.4 -91.3-133.2 174.3 -2.2 2.4 -7.2 58 58 A R > - 0 0 171 -2,-0.3 4,-1.4 1,-0.2 3,-0.2 -0.790 27.2-175.7 -92.8 122.5 -3.3 4.6 -10.1 59 59 A S H > S+ 0 0 28 -2,-0.6 4,-2.1 2,-0.2 -1,-0.2 0.778 80.3 68.6 -84.6 -29.7 -5.0 7.8 -9.1 60 60 A A H 4 S+ 0 0 62 1,-0.2 -1,-0.2 2,-0.2 4,-0.1 0.691 115.4 28.9 -62.5 -17.9 -5.8 8.9 -12.6 61 61 A L H 4 S+ 0 0 152 -3,-0.2 3,-0.4 2,-0.1 -1,-0.2 0.680 113.7 62.1-111.6 -31.7 -8.2 5.9 -12.7 62 62 A M H < S- 0 0 88 -4,-1.4 2,-0.2 1,-0.2 -2,-0.2 0.947 130.2 -5.1 -60.8 -50.7 -9.2 5.7 -9.1 63 63 A E S < S+ 0 0 133 -4,-2.1 2,-0.3 -5,-0.1 -1,-0.2 -0.679 84.9 133.1-150.6 89.9 -10.8 9.1 -9.0 64 64 A Q 0 0 138 -3,-0.4 -4,-0.0 -2,-0.2 -5,-0.0 -0.785 360.0 360.0-144.3 96.2 -10.5 11.3 -12.1 65 65 A R 0 0 296 -2,-0.3 -2,-0.1 0, 0.0 0, 0.0 0.060 360.0 360.0 -60.3 360.0 -13.5 13.1 -13.4