==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS 07-DEC-01 1KKG . COMPND 2 MOLECULE: RIBOSOME-BINDING FACTOR A; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR Y.J.HUANG,G.V.T.SWAPNA,P.K.RAJAN,H.KE,B.XIA,K.SHUKLA, . 108 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7523.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 31.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 142 0, 0.0 9,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 76.5 -9.0 -10.1 -1.4 2 2 A A + 0 0 92 8,-0.1 2,-0.3 1,-0.0 8,-0.1 0.231 360.0 115.1 162.6 45.7 -11.2 -13.1 -1.9 3 3 A K - 0 0 103 7,-0.2 2,-1.5 6,-0.2 10,-0.3 -0.754 34.8-178.0-134.9 85.8 -9.2 -15.9 -3.4 4 4 A E + 0 0 187 -2,-0.3 2,-0.2 9,-0.1 6,-0.0 -0.653 39.5 119.9 -87.2 84.2 -9.0 -18.9 -1.1 5 5 A F S S- 0 0 135 -2,-1.5 6,-0.1 2,-0.2 -2,-0.1 -0.758 74.6-110.7-135.5-179.2 -6.8 -21.2 -3.1 6 6 A G S S+ 0 0 76 -2,-0.2 -2,-0.0 4,-0.1 -1,-0.0 0.413 87.3 98.1 -94.7 -1.3 -3.5 -23.0 -3.0 7 7 A R S >> S- 0 0 172 1,-0.1 4,-0.8 -4,-0.0 3,-0.8 -0.156 96.7 -95.7 -78.6 177.6 -2.1 -20.8 -5.7 8 8 A P H 3> S+ 0 0 87 0, 0.0 4,-0.8 0, 0.0 -1,-0.1 0.405 119.1 71.9 -75.1 3.2 0.1 -17.7 -5.3 9 9 A Q H 3> S+ 0 0 89 2,-0.2 4,-1.9 3,-0.1 -6,-0.2 0.841 89.9 55.9 -84.7 -38.3 -3.1 -15.7 -5.5 10 10 A R H X> S+ 0 0 109 -3,-0.8 4,-2.3 2,-0.2 3,-0.9 0.980 111.7 40.6 -56.7 -63.3 -4.4 -16.8 -2.1 11 11 A V H 3X S+ 0 0 62 -4,-0.8 4,-2.4 1,-0.3 5,-0.2 0.879 112.5 58.0 -53.1 -41.0 -1.4 -15.7 -0.1 12 12 A A H 3X S+ 0 0 7 -4,-0.8 4,-2.0 2,-0.2 -1,-0.3 0.854 109.3 46.4 -57.7 -36.1 -1.3 -12.6 -2.3 13 13 A Q H X S+ 0 0 67 -4,-1.7 4,-2.3 2,-0.2 3,-1.7 0.976 116.5 41.6 -72.0 -59.1 -5.8 -2.7 6.1 22 22 A I H 3< S+ 0 0 15 -4,-2.4 5,-0.5 1,-0.3 4,-0.4 0.711 115.1 55.7 -60.9 -19.6 -2.5 -1.5 7.6 23 23 A L T 3< S+ 0 0 5 -4,-1.6 -1,-0.3 3,-0.2 -2,-0.2 0.662 117.9 32.5 -85.1 -19.3 -2.4 0.7 4.5 24 24 A Q T <4 S+ 0 0 54 -3,-1.7 -2,-0.2 -4,-0.5 5,-0.2 0.453 132.3 33.5-112.0 -8.8 -5.8 2.1 5.4 25 25 A R S < S+ 0 0 190 -4,-2.3 4,-0.3 4,-0.1 -3,-0.2 0.785 122.9 37.9-109.0 -62.1 -5.4 1.9 9.2 26 26 A E S S+ 0 0 57 -4,-0.4 -3,-0.2 -5,-0.2 -4,-0.1 0.717 111.5 79.0 -64.7 -21.2 -1.7 2.5 9.9 27 27 A I S S- 0 0 5 -5,-0.5 2,-1.0 -6,-0.3 -3,-0.1 -0.132 101.1 -97.0 -78.4 179.8 -1.8 5.1 7.2 28 28 A K S S+ 0 0 18 1,-0.2 4,-0.2 -5,-0.1 6,-0.1 -0.641 70.4 133.9-101.8 73.1 -3.2 8.6 7.5 29 29 A D S > >S+ 0 0 43 -2,-1.0 5,-2.0 -4,-0.3 3,-0.5 0.885 78.2 40.5 -84.9 -45.5 -6.7 8.0 6.0 30 30 A P G > 5S+ 0 0 95 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 0.702 112.3 58.1 -75.0 -21.1 -8.6 9.8 8.8 31 31 A R G 3 5S+ 0 0 206 1,-0.2 -2,-0.2 3,-0.1 -3,-0.1 0.631 108.8 45.1 -81.5 -15.9 -5.9 12.5 8.7 32 32 A L G < 5S- 0 0 33 -3,-0.5 -1,-0.2 2,-0.3 25,-0.1 0.147 103.1-132.0-110.6 14.5 -6.6 13.1 5.1 33 33 A G T < 5S+ 0 0 69 -3,-0.7 2,-0.3 1,-0.1 -4,-0.1 0.788 77.2 97.3 35.9 37.4 -10.4 13.1 5.5 34 34 A M S +B 49 0B 31 5,-1.5 5,-2.5 -2,-0.4 4,-0.3 -0.910 14.5 160.7-110.2 107.9 8.1 -10.7 -5.1 45 45 A R T 5 + 0 0 117 -2,-0.7 -1,-0.1 3,-0.2 5,-0.1 0.451 54.4 97.7-100.6 -5.6 9.8 -12.9 -2.5 46 46 A D T 5S- 0 0 148 3,-0.2 -1,-0.2 1,-0.1 -2,-0.0 0.706 117.8 -13.5 -54.9 -18.8 11.8 -14.7 -5.2 47 47 A L T 5S- 0 0 146 -3,-0.3 -2,-0.1 2,-0.2 -1,-0.1 0.331 111.9 -72.1-143.9 -71.2 14.5 -12.2 -4.0 48 48 A A T 5S+ 0 0 45 -4,-0.3 46,-1.8 1,-0.1 2,-0.3 0.175 84.4 109.3 159.7 62.0 13.2 -9.4 -1.9 49 49 A Y E < +Bc 44 94B 91 -5,-2.5 -5,-1.5 44,-0.4 2,-0.3 -0.958 30.0 169.9-155.9 134.0 11.2 -6.8 -3.7 50 50 A A E -Bc 43 95B 2 44,-0.9 46,-2.5 -2,-0.3 2,-0.4 -0.911 18.1-150.8-139.7 164.9 7.6 -5.8 -3.8 51 51 A K E -Bc 42 96B 109 -9,-2.3 -9,-1.1 -2,-0.3 2,-0.4 -0.921 12.8-173.2-144.8 113.7 5.4 -3.0 -5.2 52 52 A V E -Bc 41 97B 2 44,-2.4 46,-3.2 -2,-0.4 2,-0.4 -0.836 12.4-144.9-108.7 145.6 2.2 -1.9 -3.7 53 53 A Y E + c 0 98B 78 -13,-2.5 -13,-0.5 -2,-0.4 2,-0.4 -0.886 15.8 179.9-112.6 141.4 -0.2 0.6 -5.2 54 54 A V E - c 0 99B 0 44,-3.0 46,-2.5 -2,-0.4 2,-0.5 -0.968 8.2-163.1-143.8 122.9 -2.3 3.2 -3.3 55 55 A T B -A 37 0A 20 -18,-2.0 -18,-2.0 -2,-0.4 2,-0.3 -0.915 12.8-179.2-110.4 131.1 -4.7 5.7 -4.8 56 56 A F - 0 0 8 -2,-0.5 46,-0.6 -20,-0.2 3,-0.4 -0.773 35.8-131.8-123.2 168.1 -6.0 8.7 -2.9 57 57 A L S > S+ 0 0 78 -2,-0.3 3,-2.2 1,-0.2 4,-0.2 0.118 74.3 113.9-103.8 17.4 -8.3 11.6 -3.5 58 58 A N G > + 0 0 5 1,-0.3 3,-3.5 2,-0.2 7,-0.4 0.787 54.1 86.3 -57.6 -27.7 -5.7 14.1 -2.2 59 59 A D G 3 + 0 0 50 -3,-0.4 -1,-0.3 1,-0.3 6,-0.1 0.814 69.3 79.1 -41.4 -35.6 -5.7 15.3 -5.8 60 60 A K G < S+ 0 0 148 -3,-2.2 2,-0.5 1,-0.2 -1,-0.3 0.854 106.5 28.1 -41.3 -43.1 -8.6 17.5 -4.6 61 61 A D <> - 0 0 79 -3,-3.5 4,-2.1 -4,-0.2 -1,-0.2 -0.983 66.1-158.8-128.6 120.4 -5.9 19.7 -3.1 62 62 A E H > S+ 0 0 116 -2,-0.5 4,-1.8 1,-0.2 5,-0.2 0.687 98.8 57.1 -66.9 -18.4 -2.4 19.9 -4.5 63 63 A D H > S+ 0 0 142 2,-0.2 4,-2.2 3,-0.2 5,-0.4 0.867 111.9 38.4 -78.9 -39.9 -1.4 21.1 -1.0 64 64 A A H > S+ 0 0 30 -6,-0.3 4,-1.1 3,-0.2 5,-0.3 0.724 117.3 52.9 -80.9 -24.0 -2.7 18.0 0.7 65 65 A V H X S+ 0 0 2 -4,-2.1 4,-1.7 -7,-0.4 -2,-0.2 0.891 116.0 37.9 -76.4 -42.6 -1.5 15.9 -2.2 66 66 A K H X S+ 0 0 122 -4,-1.8 4,-1.8 2,-0.2 -2,-0.2 0.967 128.4 33.4 -71.7 -56.2 2.0 17.3 -2.0 67 67 A A H X S+ 0 0 59 -4,-2.2 4,-1.9 -5,-0.2 -3,-0.2 0.961 121.2 50.4 -63.8 -53.7 2.2 17.6 1.8 68 68 A G H >X S+ 0 0 9 -4,-1.1 4,-2.0 -5,-0.4 3,-1.2 0.946 112.8 44.5 -48.0 -61.8 0.1 14.5 2.3 69 69 A I H 3X S+ 0 0 36 -4,-1.7 4,-2.0 -5,-0.3 -1,-0.3 0.853 109.3 59.3 -52.4 -37.0 2.1 12.3 -0.1 70 70 A K H 3X S+ 0 0 113 -4,-1.8 4,-2.1 1,-0.2 -1,-0.3 0.853 105.9 47.8 -60.4 -35.8 5.1 13.8 1.6 71 71 A A H < S+ 0 0 89 -4,-2.0 3,-1.2 -5,-0.3 4,-0.4 0.906 110.6 43.5 -75.6 -44.8 6.8 9.3 1.8 74 74 A E H 3< S+ 0 0 155 -4,-2.1 3,-0.2 1,-0.3 4,-0.2 0.831 113.9 51.6 -68.9 -33.5 8.4 9.9 5.2 75 75 A A T 3X S+ 0 0 15 -4,-1.8 4,-2.4 1,-0.2 -1,-0.3 0.273 85.5 102.1 -85.6 10.5 6.2 7.2 6.7 76 76 A S H X> S+ 0 0 40 -3,-1.2 4,-2.4 2,-0.2 3,-1.2 0.989 83.2 38.2 -55.1 -74.4 7.4 4.9 3.9 77 77 A G H 3> S+ 0 0 41 -4,-0.4 4,-2.2 1,-0.3 -1,-0.2 0.695 115.2 61.3 -51.4 -19.2 10.0 2.9 5.8 78 78 A F H 3> S+ 0 0 144 -4,-0.2 4,-2.5 2,-0.2 -1,-0.3 0.895 106.2 41.1 -75.2 -43.1 7.5 3.1 8.6 79 79 A I H S+ 0 0 17 -4,-2.4 5,-1.5 1,-0.3 -2,-0.2 0.868 121.3 38.0 -44.4 -45.6 7.2 -6.7 8.3 85 85 A K H ><5S+ 0 0 152 -4,-2.3 3,-1.1 2,-0.2 -1,-0.3 0.877 113.3 55.8 -74.4 -40.1 6.8 -6.4 12.0 86 86 A A H 3<5S+ 0 0 55 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.826 122.8 29.0 -60.5 -32.3 3.1 -6.4 11.8 87 87 A M T 3<5S- 0 0 45 -4,-3.5 -1,-0.3 -5,-0.1 -2,-0.2 0.157 101.4-138.9-112.4 14.5 3.4 -9.7 10.0 88 88 A R T < 5 + 0 0 226 -3,-1.1 -3,-0.2 -5,-0.3 2,-0.1 0.782 51.8 141.3 22.4 78.5 6.6 -10.7 11.7 89 89 A L < - 0 0 83 -5,-1.5 -1,-0.1 1,-0.1 -5,-0.0 -0.217 50.4-142.8-119.3-151.0 8.1 -12.1 8.5 90 90 A R S S+ 0 0 203 -2,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.399 81.2 83.8-148.1 -44.7 11.6 -12.1 7.0 91 91 A I + 0 0 39 1,-0.1 3,-0.1 -7,-0.1 -47,-0.0 0.805 60.4 176.3 -37.4 -36.5 11.3 -11.7 3.2 92 92 A V - 0 0 82 1,-0.1 -1,-0.1 -8,-0.1 2,-0.1 0.792 18.1-169.2 23.7 60.1 11.1 -8.0 4.1 93 93 A P - 0 0 10 0, 0.0 2,-3.6 0, 0.0 -44,-0.4 -0.347 38.0 -91.2 -75.0 157.2 11.1 -7.3 0.4 94 94 A E E -c 49 0B 132 -46,-1.8 2,-1.6 -50,-0.2 -44,-0.9 -0.331 53.2-177.9 -67.3 66.5 11.5 -3.8 -1.0 95 95 A L E -c 50 0B 33 -2,-3.6 -44,-0.3 -46,-0.2 -1,-0.1 -0.551 12.5-159.7 -72.8 90.1 7.7 -3.3 -1.0 96 96 A T E -c 51 0B 64 -46,-2.5 -44,-2.4 -2,-1.6 2,-0.6 -0.219 12.8-125.9 -68.4 161.6 7.6 0.2 -2.5 97 97 A F E -c 52 0B 7 -46,-0.2 2,-0.6 -24,-0.1 -44,-0.2 -0.908 21.5-165.9-117.4 103.5 4.7 2.5 -2.0 98 98 A F E -c 53 0B 109 -46,-3.2 -44,-3.0 -2,-0.6 2,-0.8 -0.790 5.4-156.9 -92.4 121.4 3.2 3.8 -5.2 99 99 A Y E +c 54 0B 52 -2,-0.6 2,-0.9 -46,-0.2 -44,-0.2 -0.851 12.4 179.8-101.9 103.3 0.8 6.7 -4.8 100 100 A D + 0 0 20 -46,-2.5 -61,-0.1 -2,-0.8 2,-0.1 -0.787 18.7 160.1-105.3 87.9 -1.6 7.0 -7.7 101 101 A N > - 0 0 9 -2,-0.9 3,-0.8 -46,-0.2 6,-0.3 -0.184 58.1 -94.2 -93.9-170.7 -3.8 9.9 -6.9 102 102 A S T 3 S+ 0 0 7 -46,-0.6 -45,-0.1 1,-0.2 -2,-0.0 0.180 113.4 79.5 -91.4 15.7 -6.0 12.0 -9.2 103 103 A L T 3 S+ 0 0 77 1,-0.1 -1,-0.2 2,-0.1 -46,-0.0 0.338 100.2 37.2-101.1 2.4 -3.1 14.5 -9.5 104 104 A V S < S+ 0 0 109 -3,-0.8 -2,-0.2 0, 0.0 -1,-0.1 0.256 141.2 9.5-132.2 3.1 -1.4 12.3 -12.0 105 105 A E S S- 0 0 74 -4,-0.1 -3,-0.2 0, 0.0 -2,-0.1 0.388 79.9-138.5-150.1 -38.3 -4.4 11.1 -13.9 106 106 A G S S+ 0 0 51 -5,-0.2 -4,-0.2 1,-0.0 -3,-0.1 0.355 93.7 76.3 83.4 -5.2 -7.4 13.1 -12.6 107 107 A M 0 0 134 -6,-0.3 -5,-0.1 1,-0.1 -4,-0.1 -0.006 360.0 360.0-123.7 25.7 -9.4 9.9 -12.6 108 108 A R 0 0 108 -52,-0.1 -6,-0.2 -51,-0.0 -1,-0.1 0.542 360.0 360.0-108.5 360.0 -8.0 8.4 -9.5