==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN, TRANSPORT PROTEIN 18-JUN-09 2KKC . COMPND 2 MOLECULE: SEQUESTOSOME-1; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR M.YOKOCHI,F.INAGAKI . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6836.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A H 0 0 192 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -29.3 2.1 -0.0 -1.2 2 2 A M - 0 0 90 24,-0.1 25,-2.3 1,-0.1 26,-0.4 -0.031 360.0-137.4 -54.8 163.4 3.6 -3.4 -0.6 3 3 A S E -A 26 0A 72 23,-0.2 2,-0.3 24,-0.1 23,-0.2 -0.886 14.6-166.5-127.0 158.1 2.6 -6.4 -2.8 4 4 A L E -A 25 0A 16 21,-2.5 21,-1.4 -2,-0.3 2,-0.4 -0.903 14.9-142.0-149.6 116.2 1.6 -10.0 -2.2 5 5 A T E -Ab 24 92A 40 86,-1.2 88,-2.0 -2,-0.3 2,-0.6 -0.645 15.4-153.5 -80.9 126.4 1.4 -12.8 -4.8 6 6 A V E -Ab 23 93A 4 17,-1.9 17,-0.9 -2,-0.4 2,-0.5 -0.892 4.5-154.4-105.4 117.8 -1.5 -15.2 -4.2 7 7 A K E -Ab 22 94A 44 86,-1.6 88,-1.9 -2,-0.6 2,-0.4 -0.774 9.7-163.0 -93.2 129.7 -1.0 -18.7 -5.6 8 8 A A E -Ab 21 95A 3 13,-1.8 13,-0.9 -2,-0.5 2,-0.5 -0.888 5.7-155.1-114.3 143.5 -4.2 -20.7 -6.4 9 9 A Y E -Ab 20 96A 65 86,-1.6 88,-2.4 -2,-0.4 2,-0.3 -0.960 10.4-145.2-121.8 117.6 -4.5 -24.4 -7.0 10 10 A L E - b 0 97A 4 9,-1.8 8,-2.0 -2,-0.5 2,-0.5 -0.621 13.7-162.7 -81.9 134.8 -7.3 -25.9 -9.1 11 11 A L E -Ab 17 98A 10 86,-1.2 88,-0.5 -2,-0.3 6,-0.2 -0.973 8.4-178.5-122.8 125.8 -8.7 -29.3 -8.0 12 12 A G - 0 0 24 4,-1.0 -1,-0.1 -2,-0.5 3,-0.1 0.593 58.8 -56.1 -87.5-120.8 -10.8 -31.5 -10.2 13 13 A K S S+ 0 0 164 1,-0.1 -2,-0.0 3,-0.0 0, 0.0 0.784 137.1 44.4 -96.3 -35.5 -12.3 -34.8 -9.2 14 14 A E S S- 0 0 133 2,-0.1 -1,-0.1 0, 0.0 3,-0.1 0.075 114.6-111.0 -96.4 22.9 -9.1 -36.6 -8.0 15 15 A E S S+ 0 0 131 1,-0.2 2,-0.4 -3,-0.1 -4,-0.0 0.822 70.2 151.5 51.8 32.6 -8.0 -33.4 -6.2 16 16 A A - 0 0 51 1,-0.1 -4,-1.0 -7,-0.0 2,-0.4 -0.776 59.2 -96.3 -98.4 139.5 -5.3 -33.2 -8.8 17 17 A A E +A 11 0A 72 -2,-0.4 -6,-0.2 1,-0.2 3,-0.1 -0.332 47.2 171.6 -54.7 107.8 -3.8 -29.8 -9.9 18 18 A R E + 0 0 160 -8,-2.0 2,-0.3 -2,-0.4 -1,-0.2 0.919 63.6 0.9 -85.5 -51.8 -5.8 -28.9 -12.9 19 19 A E E - 0 0 114 -9,-0.1 -9,-1.8 2,-0.0 2,-0.4 -0.989 60.4-153.1-141.2 148.7 -4.5 -25.3 -13.5 20 20 A I E +A 9 0A 74 -2,-0.3 2,-0.3 -11,-0.2 -11,-0.1 -0.984 24.6 152.5-127.1 128.6 -2.1 -23.0 -11.8 21 21 A R E -A 8 0A 137 -13,-0.9 -13,-1.8 -2,-0.4 2,-0.3 -0.993 18.8-162.1-151.8 152.7 -2.2 -19.2 -11.8 22 22 A R E -A 7 0A 126 -2,-0.3 2,-0.3 -15,-0.2 -15,-0.2 -0.932 1.9-164.4-135.9 159.0 -1.0 -16.3 -9.7 23 23 A F E -A 6 0A 18 -17,-0.9 -17,-1.9 -2,-0.3 2,-0.4 -0.999 27.3-110.3-146.0 145.2 -1.9 -12.6 -9.4 24 24 A S E -A 5 0A 105 -2,-0.3 2,-0.3 -19,-0.2 -19,-0.2 -0.609 38.1-169.6 -78.1 126.7 -0.2 -9.6 -7.7 25 25 A F E -A 4 0A 40 -21,-1.4 -21,-2.5 -2,-0.4 2,-0.3 -0.771 20.2-114.8-115.4 161.1 -2.2 -8.3 -4.7 26 26 A C E -A 3 0A 70 -2,-0.3 -23,-0.2 -23,-0.2 -24,-0.1 -0.756 11.7-137.1 -97.6 141.2 -1.9 -5.1 -2.6 27 27 A F S S+ 0 0 128 -25,-2.3 -24,-0.1 -2,-0.3 -1,-0.1 0.650 75.2 109.6 -67.9 -14.0 -0.9 -5.2 1.1 28 28 A S S S- 0 0 59 -26,-0.4 -2,-0.1 1,-0.1 0, 0.0 -0.108 79.6-120.5 -59.8 160.6 -3.6 -2.6 1.7 29 29 A P S S- 0 0 105 0, 0.0 -1,-0.1 0, 0.0 53,-0.0 0.924 87.4 -4.2 -69.8 -46.8 -6.8 -3.6 3.6 30 30 A E - 0 0 74 1,-0.1 10,-0.1 10,-0.1 3,-0.0 -0.992 56.5-130.8-149.6 154.0 -9.2 -2.8 0.7 31 31 A P S S+ 0 0 89 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.932 93.4 25.5 -69.8 -48.4 -9.2 -1.3 -2.8 32 32 A E - 0 0 101 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.746 53.8-164.2-116.2 164.6 -12.0 1.2 -2.3 33 33 A A S S+ 0 0 88 -2,-0.3 -1,-0.1 4,-0.0 0, 0.0 0.643 92.1 32.0-116.6 -30.8 -13.4 2.9 0.8 34 34 A E S S+ 0 0 181 3,-0.0 -2,-0.0 1,-0.0 0, 0.0 0.873 120.2 47.0 -94.0 -49.7 -16.8 4.1 -0.5 35 35 A A S S+ 0 0 79 2,-0.1 2,-0.0 -4,-0.0 -1,-0.0 0.902 89.7 97.9 -59.5 -43.0 -17.7 1.4 -3.0 36 36 A A - 0 0 27 1,-0.1 4,-0.1 2,-0.1 -6,-0.0 -0.267 54.2-171.7 -51.7 119.6 -16.8 -1.3 -0.5 37 37 A A - 0 0 95 -2,-0.0 -1,-0.1 3,-0.0 3,-0.1 -0.284 69.6 -51.4-110.4 45.6 -20.1 -2.4 1.1 38 38 A G S S+ 0 0 54 1,-0.5 -2,-0.1 40,-0.0 0, 0.0 -0.635 119.0 64.7 127.6 -76.0 -18.6 -4.7 3.7 39 39 A P + 0 0 48 0, 0.0 -1,-0.5 0, 0.0 38,-0.0 0.102 43.4 155.0 -69.8-171.8 -16.1 -7.1 2.1 40 40 A G > + 0 0 4 -3,-0.1 4,-1.1 -4,-0.1 -10,-0.1 -0.101 68.6 34.5-174.9 -74.2 -12.9 -6.3 0.4 41 41 A P H > S+ 0 0 24 0, 0.0 4,-3.3 0, 0.0 5,-0.3 0.932 120.6 46.7 -69.8 -48.1 -10.0 -8.8 0.2 42 42 A C H > S+ 0 0 7 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.965 114.9 45.1 -59.4 -55.9 -12.3 -11.9 -0.1 43 43 A E H 4 S+ 0 0 109 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.800 116.2 50.3 -59.0 -29.0 -14.5 -10.4 -2.8 44 44 A R H X S+ 0 0 97 -4,-1.1 4,-1.5 2,-0.2 3,-0.4 0.952 114.0 40.5 -74.4 -52.6 -11.4 -9.2 -4.5 45 45 A L H X S+ 0 0 6 -4,-3.3 4,-2.5 1,-0.2 3,-0.5 0.944 113.3 53.6 -61.6 -50.0 -9.5 -12.5 -4.5 46 46 A L H X S+ 0 0 37 -4,-3.0 4,-0.8 -5,-0.3 -1,-0.2 0.744 105.8 58.2 -57.5 -22.6 -12.6 -14.5 -5.4 47 47 A S H > S+ 0 0 58 -4,-0.5 4,-1.5 -3,-0.4 -1,-0.2 0.908 108.8 41.4 -74.4 -44.0 -13.0 -12.1 -8.3 48 48 A R H X S+ 0 0 101 -4,-1.5 4,-2.9 -3,-0.5 5,-0.3 0.950 108.8 57.9 -68.7 -50.8 -9.6 -12.9 -9.8 49 49 A V H X S+ 0 0 2 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.812 106.7 53.1 -49.3 -32.2 -9.7 -16.6 -9.2 50 50 A A H < S+ 0 0 18 -4,-0.8 -1,-0.2 -5,-0.3 -2,-0.2 0.957 113.4 38.6 -69.6 -52.7 -12.9 -16.6 -11.3 51 51 A V H < S+ 0 0 96 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.733 120.9 48.6 -70.3 -22.3 -11.4 -14.8 -14.3 52 52 A L H < S+ 0 0 28 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.814 117.0 40.3 -85.8 -34.3 -8.2 -16.8 -13.9 53 53 A F >< + 0 0 1 -4,-2.2 3,-1.3 -5,-0.3 -1,-0.2 -0.611 62.8 156.0-116.6 70.5 -10.0 -20.1 -13.6 54 54 A P T 3 + 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.586 55.4 92.3 -69.7 -9.7 -12.8 -20.0 -16.2 55 55 A A T 3 S+ 0 0 73 -3,-0.1 2,-0.2 2,-0.1 -5,-0.1 0.762 95.5 31.4 -56.2 -24.9 -12.7 -23.8 -16.3 56 56 A L S < S- 0 0 20 -3,-1.3 5,-0.1 1,-0.2 -3,-0.0 -0.591 110.4 -53.7-122.8-174.9 -15.4 -23.6 -13.6 57 57 A R - 0 0 150 3,-0.3 -1,-0.2 -2,-0.2 -4,-0.1 -0.117 46.1-122.9 -58.7 158.1 -18.3 -21.3 -12.6 58 58 A P S S+ 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -5,-0.1 0.935 104.6 3.4 -69.7 -48.8 -17.6 -17.6 -12.1 59 59 A G S S+ 0 0 64 1,-0.1 2,-0.4 -9,-0.1 -2,-0.1 0.169 107.1 97.4-124.4 16.0 -18.9 -17.4 -8.5 60 60 A G + 0 0 1 2,-0.0 40,-2.6 -10,-0.0 -3,-0.3 -0.365 68.3 84.5-102.5 53.5 -19.8 -21.1 -7.9 61 61 A F E -C 99 0A 10 -2,-0.4 2,-0.4 38,-0.3 38,-0.3 -0.977 61.2-140.5-148.9 159.1 -16.6 -22.1 -6.1 62 62 A Q E -C 98 0A 46 36,-2.9 36,-0.9 -2,-0.3 2,-0.6 -0.986 13.8-140.8-128.6 127.1 -15.2 -22.1 -2.6 63 63 A A E -CD 97 75A 0 12,-0.6 12,-2.4 -2,-0.4 2,-0.5 -0.750 17.6-160.3 -88.8 121.8 -11.5 -21.3 -1.7 64 64 A H E -CD 96 74A 39 32,-3.3 32,-3.2 -2,-0.6 2,-0.4 -0.873 4.3-163.9-105.5 132.1 -10.1 -23.5 1.0 65 65 A Y E - D 0 73A 20 8,-1.6 8,-1.6 -2,-0.5 2,-0.2 -0.895 22.5-113.4-116.3 144.9 -7.0 -22.5 3.0 66 66 A R E - D 0 72A 105 -2,-0.4 6,-0.2 28,-0.3 5,-0.2 -0.495 32.4-154.8 -75.6 141.4 -4.8 -24.7 5.2 67 67 A A > - 0 0 15 4,-1.4 3,-0.6 -2,-0.2 -1,-0.1 -0.380 41.5 -77.4-105.2-174.6 -4.8 -24.0 8.9 68 68 A E T 3 S+ 0 0 166 1,-0.3 -2,-0.1 -2,-0.1 -1,-0.0 0.805 136.9 45.1 -53.7 -30.1 -2.3 -24.5 11.7 69 69 A R T 3 S- 0 0 210 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.736 115.1-118.9 -85.6 -25.6 -3.4 -28.2 11.6 70 70 A G < + 0 0 42 -3,-0.6 -2,-0.1 1,-0.3 -1,-0.0 0.054 67.7 134.3 109.7 -24.6 -3.2 -28.4 7.9 71 71 A D - 0 0 106 -5,-0.2 -4,-1.4 1,-0.1 2,-0.4 -0.046 62.3-101.0 -54.1 160.8 -6.9 -29.2 7.4 72 72 A L E -D 66 0A 75 -6,-0.2 2,-0.5 -3,-0.1 -6,-0.2 -0.735 33.4-170.5 -91.5 134.0 -8.8 -27.3 4.7 73 73 A V E -D 65 0A 51 -8,-1.6 -8,-1.6 -2,-0.4 2,-0.6 -0.884 20.7-136.7-128.6 101.1 -11.1 -24.4 5.7 74 74 A A E -D 64 0A 41 -2,-0.5 -10,-0.3 -10,-0.2 2,-0.2 -0.377 29.1-163.3 -57.7 105.6 -13.4 -23.0 3.0 75 75 A F E +D 63 0A 0 -12,-2.4 -12,-0.6 -2,-0.6 3,-0.1 -0.643 29.2 157.5 -94.6 151.8 -13.1 -19.2 3.6 76 76 A S + 0 0 62 -2,-0.2 2,-0.3 1,-0.1 -1,-0.1 0.061 52.1 77.8-161.4 30.7 -15.5 -16.6 2.3 77 77 A S S >> S- 0 0 44 1,-0.1 3,-1.6 -35,-0.1 4,-1.3 -0.996 73.5-127.0-149.3 141.6 -15.1 -13.5 4.5 78 78 A D H >> S+ 0 0 63 -2,-0.3 4,-2.2 1,-0.3 3,-0.6 0.895 112.1 60.4 -52.0 -44.3 -12.5 -10.7 4.8 79 79 A E H 3> S+ 0 0 109 1,-0.3 4,-0.5 2,-0.2 -1,-0.3 0.786 105.0 50.4 -55.4 -27.7 -12.2 -11.5 8.5 80 80 A E H <> S+ 0 0 28 -3,-1.6 4,-1.9 2,-0.2 -1,-0.3 0.801 106.8 53.9 -80.6 -31.2 -11.0 -15.0 7.4 81 81 A L H X S+ 0 0 94 -4,-0.5 3,-0.6 -5,-0.3 4,-0.6 0.866 106.2 56.9 -82.9 -40.5 -6.2 -14.6 9.6 84 84 A A H >X S+ 0 0 3 -4,-1.9 3,-1.1 1,-0.3 4,-1.0 0.889 106.0 51.1 -57.8 -41.3 -5.1 -16.7 6.6 85 85 A M H 3< S+ 0 0 59 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.738 97.0 70.1 -68.8 -22.6 -2.2 -14.3 5.9 86 86 A S H <4 S+ 0 0 94 -3,-0.6 -1,-0.2 -4,-0.4 -2,-0.2 0.758 97.4 52.3 -66.0 -24.4 -1.3 -14.5 9.6 87 87 A Y H << S+ 0 0 71 -3,-1.1 2,-0.3 -4,-0.6 -2,-0.2 0.952 97.7 69.0 -76.3 -53.2 -0.1 -18.1 9.0 88 88 A V < - 0 0 25 -4,-1.0 5,-0.0 1,-0.2 -1,-0.0 -0.526 58.5-171.3 -71.9 127.8 2.2 -17.4 6.0 89 89 A K + 0 0 200 -2,-0.3 -1,-0.2 3,-0.0 -4,-0.0 0.746 67.5 67.3 -89.0 -27.5 5.3 -15.5 7.0 90 90 A D S S- 0 0 110 2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.037 99.7 -99.2 -80.5-171.8 6.4 -14.9 3.4 91 91 A D S S+ 0 0 89 2,-0.0 -86,-1.2 -87,-0.0 2,-0.5 0.030 93.8 96.6 -99.5 25.3 4.8 -12.7 0.8 92 92 A I E -b 5 0A 36 -88,-0.2 2,-0.7 -7,-0.1 -2,-0.2 -0.961 55.3-164.0-121.4 118.8 3.1 -15.8 -0.9 93 93 A F E -b 6 0A 11 -88,-2.0 -86,-1.6 -2,-0.5 2,-0.3 -0.874 10.0-164.7-104.8 108.4 -0.5 -16.7 -0.1 94 94 A R E +b 7 0A 101 -2,-0.7 2,-0.3 -88,-0.2 -28,-0.3 -0.720 13.0 170.5 -93.7 140.8 -1.3 -20.3 -1.2 95 95 A I E -b 8 0A 0 -88,-1.9 -86,-1.6 -2,-0.3 2,-0.7 -0.989 32.7-121.9-147.9 153.9 -4.9 -21.5 -1.4 96 96 A Y E -bC 9 64A 97 -32,-3.2 -32,-3.3 -2,-0.3 2,-0.4 -0.870 25.8-155.0-102.6 113.2 -6.9 -24.4 -2.7 97 97 A I E +bC 10 63A 0 -88,-2.4 -86,-1.2 -2,-0.7 2,-0.4 -0.703 16.3 175.3 -89.0 134.9 -9.6 -23.6 -5.3 98 98 A K E -bC 11 62A 70 -36,-0.9 -36,-2.9 -2,-0.4 2,-0.3 -0.979 25.7-131.9-143.5 127.4 -12.5 -25.9 -5.7 99 99 A E E C 0 61A 99 -88,-0.5 -38,-0.3 -2,-0.4 -2,-0.0 -0.593 360.0 360.0 -79.7 134.3 -15.6 -25.5 -7.9 100 100 A K 0 0 156 -40,-2.6 -39,-0.2 -2,-0.3 -1,-0.1 0.997 360.0 360.0 -68.9 360.0 -19.0 -26.1 -6.2