==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-JAN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-09 2KLC . COMPND 2 MOLECULE: UBIQUILIN-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.S.DOHERTY,S.DHE-PAGANON,C.FARES,S.LEMAK,A.GUTMANAS,M.GARCI . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5134.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 20.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 23 A P 0 0 187 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 113.9 -12.6 19.5 6.3 2 24 A K - 0 0 152 1,-0.1 2,-0.2 3,-0.0 3,-0.0 -0.514 360.0-105.8 -75.8 153.2 -13.3 16.3 4.3 3 25 A I - 0 0 78 -2,-0.2 2,-0.5 1,-0.1 -1,-0.1 -0.577 43.2 -97.8 -82.0 147.9 -11.1 13.2 5.1 4 26 A M E -A 19 0A 7 15,-1.7 15,-2.2 -2,-0.2 2,-0.8 -0.556 31.5-148.4 -82.2 117.9 -8.5 12.4 2.4 5 27 A K E -A 18 0A 60 -2,-0.5 61,-1.9 13,-0.2 2,-0.6 -0.763 14.8-169.7 -92.0 104.2 -9.7 9.7 -0.1 6 28 A V E -A 17 0A 0 11,-2.1 11,-2.4 -2,-0.8 2,-0.3 -0.867 10.5-148.2 -98.8 117.2 -6.6 7.7 -1.3 7 29 A T E -Ab 16 68A 14 60,-2.1 62,-2.3 -2,-0.6 2,-0.5 -0.671 7.9-157.5 -84.1 133.9 -7.2 5.3 -4.2 8 30 A V E -Ab 15 69A 0 7,-2.5 7,-2.4 -2,-0.3 2,-0.6 -0.980 2.1-155.6-114.7 119.0 -5.1 2.1 -4.3 9 31 A K E +Ab 14 70A 121 60,-2.7 62,-2.5 -2,-0.5 5,-0.2 -0.867 23.6 174.6 -97.4 116.5 -4.7 0.3 -7.7 10 32 A T - 0 0 6 3,-2.4 62,-0.1 -2,-0.6 60,-0.0 -0.694 47.8-108.8-117.8 165.3 -3.9 -3.4 -7.2 11 33 A P S S+ 0 0 95 0, 0.0 3,-0.1 0, 0.0 61,-0.1 0.719 121.3 46.8 -59.6 -22.1 -3.4 -6.6 -9.4 12 34 A K S S- 0 0 59 1,-0.2 2,-0.2 66,-0.0 -3,-0.0 0.924 126.9 -50.6 -86.2 -51.9 -6.8 -7.7 -8.0 13 35 A E - 0 0 86 -5,-0.1 -3,-2.4 2,-0.0 2,-0.4 -0.728 58.7 -81.9-164.7-164.7 -9.0 -4.6 -8.3 14 36 A K E +A 9 0A 153 -5,-0.2 2,-0.2 -2,-0.2 -5,-0.2 -0.985 44.8 173.8-131.6 126.0 -9.2 -0.8 -7.4 15 37 A E E -A 8 0A 58 -7,-2.4 -7,-2.5 -2,-0.4 2,-0.3 -0.683 19.2-147.9-122.5 170.3 -10.1 0.4 -3.9 16 38 A E E -A 7 0A 85 -9,-0.3 -9,-0.3 -2,-0.2 2,-0.2 -0.928 12.3-164.9-147.9 121.8 -10.2 3.8 -2.0 17 39 A F E -A 6 0A 22 -11,-2.4 -11,-2.1 -2,-0.3 2,-0.5 -0.669 18.9-126.5-104.5 159.6 -9.6 4.3 1.7 18 40 A A E +A 5 0A 55 -2,-0.2 -13,-0.2 -13,-0.2 -14,-0.0 -0.945 37.8 159.6-111.0 116.9 -10.4 7.3 4.0 19 41 A V E -A 4 0A 4 -15,-2.2 -15,-1.7 -2,-0.5 2,-0.7 -0.968 48.9-121.6-137.8 146.5 -7.4 8.7 6.0 20 42 A P - 0 0 83 0, 0.0 -15,-0.1 0, 0.0 -2,-0.0 -0.026 57.9-102.6 -83.2 36.8 -6.8 12.2 7.7 21 43 A E S S+ 0 0 107 -2,-0.7 38,-0.2 -17,-0.2 42,-0.1 0.446 114.8 88.8 47.7 11.8 -3.7 12.6 5.5 22 44 A N + 0 0 120 2,-0.1 2,-0.6 37,-0.1 -1,-0.1 0.701 56.9 103.2 -96.8 -28.2 -1.7 11.7 8.7 23 45 A S - 0 0 21 4,-0.1 35,-0.4 34,-0.1 36,-0.2 -0.454 60.4-162.6 -62.9 103.0 -1.8 8.0 8.0 24 46 A S >> - 0 0 19 -2,-0.6 4,-2.5 33,-0.2 3,-1.2 -0.222 39.0 -85.6 -77.8 177.9 1.7 7.2 6.7 25 47 A V H 3> S+ 0 0 9 31,-1.2 4,-2.5 28,-0.3 5,-0.3 0.886 129.0 55.9 -57.5 -44.0 2.5 3.9 4.7 26 48 A Q H 34 S+ 0 0 69 30,-0.4 -1,-0.3 28,-0.4 28,-0.1 0.733 117.7 35.8 -58.2 -28.0 3.1 1.9 8.0 27 49 A Q H <> S+ 0 0 80 -3,-1.2 4,-0.6 2,-0.1 3,-0.2 0.757 117.8 52.2 -91.9 -32.1 -0.5 2.9 9.1 28 50 A F H >X S+ 0 0 0 -4,-2.5 4,-1.4 1,-0.2 3,-0.7 0.868 100.5 56.2 -79.0 -42.0 -2.1 2.8 5.6 29 51 A K H 3X S+ 0 0 46 -4,-2.5 4,-2.3 1,-0.3 -1,-0.2 0.648 99.8 64.2 -70.4 -15.5 -1.1 -0.7 4.3 30 52 A E H 3> S+ 0 0 88 -5,-0.3 4,-1.8 -3,-0.2 -1,-0.3 0.861 102.1 48.4 -68.4 -40.4 -2.8 -2.1 7.5 31 53 A E H S+ 0 0 17 -4,-2.3 5,-1.8 1,-0.2 4,-0.7 0.871 109.6 46.0 -59.8 -46.1 -4.3 -5.8 4.4 34 56 A K H <5S+ 0 0 114 -4,-1.8 -1,-0.2 3,-0.2 -2,-0.2 0.823 117.4 44.8 -66.4 -32.6 -7.5 -6.3 6.3 35 57 A R H <5S+ 0 0 78 -4,-0.9 -2,-0.2 -3,-0.3 -1,-0.2 0.916 119.8 38.3 -80.1 -45.6 -9.7 -5.3 3.3 36 58 A F H <5S- 0 0 6 -4,-2.9 -2,-0.2 -5,-0.1 -1,-0.2 0.434 108.0-124.8 -83.4 -4.1 -7.8 -7.4 0.6 37 59 A K T <5 + 0 0 157 -4,-0.7 -3,-0.2 -5,-0.3 2,-0.2 0.800 68.9 130.8 60.0 35.4 -7.3 -10.3 3.3 38 60 A S < - 0 0 13 -5,-1.8 2,-0.3 -6,-0.2 -1,-0.2 -0.601 64.5-103.1-108.5 165.2 -3.5 -10.0 2.6 39 61 A H > - 0 0 127 -2,-0.2 3,-0.7 1,-0.1 4,-0.3 -0.735 24.5-129.8 -86.4 146.2 -0.5 -9.8 5.0 40 62 A T G > S+ 0 0 53 -2,-0.3 3,-0.7 1,-0.2 -1,-0.1 0.776 110.9 59.0 -66.0 -29.0 1.1 -6.3 5.3 41 63 A D G 3 S+ 0 0 153 1,-0.2 -1,-0.2 3,-0.0 -3,-0.0 0.773 102.3 53.8 -68.4 -28.6 4.6 -7.9 4.5 42 64 A Q G < S+ 0 0 50 -3,-0.7 32,-1.6 31,-0.0 2,-0.6 0.511 95.4 87.6 -82.6 -7.6 3.1 -9.1 1.2 43 65 A L E < +C 73 0A 14 -3,-0.7 2,-0.4 -4,-0.3 30,-0.2 -0.861 51.2 175.2 -99.1 119.9 2.1 -5.5 0.4 44 66 A V E -C 72 0A 59 28,-1.7 28,-2.0 -2,-0.6 2,-0.2 -0.984 16.9-152.5-122.2 116.1 4.6 -3.2 -1.4 45 67 A L E -CD 71 52A 3 7,-0.7 7,-2.3 -2,-0.4 2,-0.4 -0.620 10.3-166.2 -82.8 144.8 3.4 0.3 -2.4 46 68 A I E +CD 70 51A 43 24,-1.8 24,-2.3 5,-0.3 2,-0.3 -0.998 17.6 152.4-134.1 133.6 5.0 2.1 -5.4 47 69 A F E > + D 0 50A 41 3,-2.5 3,-1.5 -2,-0.4 22,-0.1 -0.944 65.8 19.2-159.6 145.1 4.7 5.8 -6.3 48 70 A A T 3 S- 0 0 86 -2,-0.3 3,-0.1 1,-0.3 -2,-0.0 0.592 129.9 -66.5 66.3 15.9 7.0 8.3 -8.2 49 71 A G T 3 S+ 0 0 76 1,-0.3 2,-0.3 0, 0.0 -1,-0.3 0.333 119.0 94.8 89.3 -4.6 8.7 5.2 -9.6 50 72 A K E < S-D 47 0A 74 -3,-1.5 -3,-2.5 1,-0.0 -1,-0.3 -0.826 81.4-100.4-120.3 155.9 10.1 4.2 -6.1 51 73 A I E -D 46 0A 88 -2,-0.3 2,-0.8 -5,-0.2 -5,-0.3 -0.574 30.4-130.9 -76.8 131.9 8.8 1.8 -3.4 52 74 A L E -D 45 0A 8 -7,-2.3 -7,-0.7 -2,-0.3 2,-0.1 -0.790 31.9-176.1 -85.3 109.0 7.0 3.4 -0.4 53 75 A K > - 0 0 110 -2,-0.8 3,-1.0 -9,-0.1 -28,-0.3 -0.276 46.9 -90.0 -90.4-177.6 8.5 2.0 2.8 54 76 A D T 3 S+ 0 0 114 1,-0.2 -28,-0.4 -29,-0.2 -29,-0.1 0.744 129.8 61.0 -68.4 -22.6 7.5 2.7 6.4 55 77 A Q T 3 S+ 0 0 159 -30,-0.1 2,-0.3 -31,-0.1 -1,-0.2 0.643 97.2 78.8 -72.8 -19.3 10.0 5.6 6.4 56 78 A D < - 0 0 12 -3,-1.0 -31,-1.2 3,-0.0 -30,-0.4 -0.665 67.4-157.6 -89.2 144.6 7.8 7.0 3.5 57 79 A T > - 0 0 44 -2,-0.3 4,-0.8 -33,-0.2 3,-0.2 -0.963 18.9-135.7-115.7 142.7 4.4 8.8 4.0 58 80 A L T >4>S+ 0 0 1 -35,-0.4 5,-2.1 -2,-0.4 3,-1.0 0.917 104.8 56.3 -62.5 -40.0 1.9 8.9 1.2 59 81 A S G >45S+ 0 0 29 1,-0.3 3,-1.4 -36,-0.2 -1,-0.2 0.823 100.7 57.6 -63.1 -35.1 1.2 12.7 1.8 60 82 A Q G 345S+ 0 0 161 1,-0.3 -1,-0.3 -3,-0.2 -2,-0.2 0.766 103.3 54.5 -67.9 -25.6 4.9 13.6 1.4 61 83 A H G <<5S- 0 0 51 -3,-1.0 -1,-0.3 -4,-0.8 -2,-0.2 0.306 126.4-101.5 -90.6 8.3 4.9 12.0 -2.2 62 84 A G T < 5S+ 0 0 36 -3,-1.4 2,-1.1 1,-0.2 -3,-0.2 0.714 73.8 148.5 76.9 22.7 1.9 14.3 -3.1 63 85 A I < + 0 0 0 -5,-2.1 -1,-0.2 -6,-0.1 2,-0.2 -0.796 23.3 136.4 -89.8 92.3 -0.6 11.5 -2.6 64 86 A H > - 0 0 65 -2,-1.1 3,-2.1 1,-0.2 2,-0.2 -0.376 60.4 -26.0-118.4-161.5 -3.7 13.4 -1.5 65 87 A D T 3 S+ 0 0 73 1,-0.3 -59,-0.2 -2,-0.2 -1,-0.2 -0.376 132.9 14.5 -59.2 118.3 -7.4 13.4 -2.3 66 88 A G T 3 S+ 0 0 57 -61,-1.9 -1,-0.3 1,-0.4 2,-0.1 0.234 99.7 118.8 100.2 -11.5 -8.0 12.0 -5.8 67 89 A L < - 0 0 68 -3,-2.1 -60,-2.1 -62,-0.2 -1,-0.4 -0.463 52.5-142.2 -84.7 160.9 -4.4 10.5 -6.2 68 90 A T E -b 7 0A 51 -62,-0.2 2,-0.3 -2,-0.1 -60,-0.2 -0.990 2.2-149.5-133.1 128.8 -3.7 6.8 -6.7 69 91 A V E -b 8 0A 0 -62,-2.3 -60,-2.7 -2,-0.4 2,-0.8 -0.763 20.9-127.6 -94.4 141.7 -0.9 4.5 -5.3 70 92 A H E -bC 9 46A 110 -24,-2.3 -24,-1.8 -2,-0.3 2,-0.3 -0.814 31.7-169.1 -92.6 106.9 0.4 1.5 -7.3 71 93 A L E - C 0 45A 6 -62,-2.5 2,-0.5 -2,-0.8 -26,-0.2 -0.772 13.7-162.2-100.0 141.3 0.2 -1.5 -5.0 72 94 A V E - C 0 44A 58 -28,-2.0 -28,-1.7 -2,-0.3 2,-0.4 -0.981 10.2-160.6-122.2 112.3 1.7 -5.0 -5.8 73 95 A I E - C 0 43A 18 -2,-0.5 -30,-0.2 -30,-0.2 3,-0.2 -0.801 9.8-170.9 -96.2 136.1 0.4 -7.8 -3.6 74 96 A K + 0 0 140 -32,-1.6 3,-0.1 -2,-0.4 -31,-0.1 -0.296 51.6 112.1-124.1 44.0 2.4 -11.0 -3.3 75 97 A T - 0 0 8 3,-0.2 2,-2.2 1,-0.1 -1,-0.1 0.840 46.4-173.4 -76.6 -38.5 -0.1 -13.3 -1.5 76 98 A Q S S+ 0 0 164 2,-0.3 -1,-0.1 -3,-0.2 -3,-0.0 -0.408 79.0 64.1 63.9 -53.4 -0.6 -15.7 -4.6 77 99 A N S S+ 0 0 112 -2,-2.2 -1,-0.2 1,-0.2 -3,-0.0 0.430 93.7 65.8 -77.2 -0.6 -3.4 -17.6 -2.6 78 100 A R 0 0 117 1,-0.1 -2,-0.3 -5,-0.0 -3,-0.2 -0.790 360.0 360.0-115.4 82.7 -5.5 -14.3 -2.7 79 101 A P 0 0 147 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.970 360.0 360.0 -79.8 360.0 -6.2 -13.8 -6.5