==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 02-JUL-09 2KLG . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.MADL,W.BERMEL,K.ZANGGER . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5921.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 56 0, 0.0 2,-0.8 0, 0.0 14,-0.4 0.000 360.0 360.0 360.0-178.5 -14.6 2.2 -1.3 2 2 A Q + 0 0 117 12,-0.1 62,-3.2 15,-0.1 2,-0.3 -0.805 360.0 146.9 -95.0 106.7 -14.4 3.0 2.5 3 3 A I - 0 0 9 -2,-0.8 2,-0.6 60,-0.2 12,-0.2 -0.971 40.9-140.8-139.0 153.2 -10.9 2.3 3.8 4 4 A F + 0 0 159 61,-0.5 63,-0.3 -2,-0.3 2,-0.3 -0.860 27.2 176.6-118.8 97.1 -8.6 3.7 6.5 5 5 A V E -A 13 0A 15 8,-0.9 8,-0.6 -2,-0.6 2,-0.5 -0.686 20.8-136.9 -99.0 152.7 -5.0 3.7 5.5 6 6 A K E -A 12 0A 85 -2,-0.3 2,-0.1 61,-0.2 6,-0.1 -0.929 16.2-161.2-113.3 130.9 -2.1 5.2 7.5 7 7 A T > - 0 0 20 4,-0.8 3,-1.6 -2,-0.5 62,-0.0 -0.459 38.4-100.3-100.0 175.5 0.7 7.3 6.0 8 8 A L T 3 S+ 0 0 89 1,-0.3 -1,-0.1 -2,-0.1 63,-0.1 0.753 126.8 49.1 -66.9 -21.9 4.2 8.1 7.3 9 9 A T T 3 S- 0 0 100 2,-0.1 -1,-0.3 62,-0.0 3,-0.1 -0.034 118.6-110.3-105.5 28.9 2.7 11.5 8.3 10 10 A G < + 0 0 50 -3,-1.6 2,-0.2 1,-0.2 -2,-0.1 0.806 64.3 162.6 47.6 32.9 -0.3 10.0 10.1 11 11 A K - 0 0 107 1,-0.0 -4,-0.8 0, 0.0 2,-0.7 -0.578 37.6-132.8 -84.5 146.4 -2.5 11.4 7.3 12 12 A T E +A 6 0A 101 -2,-0.2 2,-0.3 -6,-0.1 -6,-0.1 -0.870 37.8 160.0-103.2 110.3 -6.0 10.1 6.6 13 13 A I E -A 5 0A 31 -2,-0.7 -8,-0.9 -8,-0.6 2,-0.3 -0.809 34.1-117.2-125.1 166.7 -6.7 9.4 3.0 14 14 A T - 0 0 121 -2,-0.3 2,-0.4 -10,-0.1 -12,-0.1 -0.746 23.0-163.4-104.5 152.5 -9.2 7.3 1.0 15 15 A L - 0 0 28 -14,-0.4 2,-0.4 -2,-0.3 -12,-0.1 -0.998 10.8-140.1-138.0 140.3 -8.4 4.3 -1.2 16 16 A E - 0 0 130 -2,-0.4 2,-0.4 10,-0.1 13,-0.1 -0.805 20.6-177.2-101.0 139.0 -10.4 2.5 -3.9 17 17 A V - 0 0 30 -2,-0.4 46,-0.1 12,-0.0 -15,-0.1 -0.999 11.8-149.8-138.5 138.3 -10.4 -1.3 -4.3 18 18 A E > - 0 0 95 -2,-0.4 3,-1.4 4,-0.1 8,-0.0 -0.543 32.4-104.6-100.1 167.9 -12.1 -3.6 -6.8 19 19 A P T 3 S+ 0 0 119 0, 0.0 38,-0.3 0, 0.0 2,-0.2 0.964 121.5 34.1 -54.9 -58.9 -13.3 -7.2 -6.3 20 20 A S T 3 S+ 0 0 84 36,-0.1 2,-0.7 37,-0.1 -3,-0.0 -0.132 85.5 151.3 -90.6 38.5 -10.4 -8.9 -8.2 21 21 A D < - 0 0 0 -3,-1.4 35,-1.9 -2,-0.2 36,-0.4 -0.610 32.1-153.5 -75.4 114.1 -7.9 -6.3 -7.0 22 22 A T B > -B 55 0B 38 -2,-0.7 4,-2.3 33,-0.2 33,-0.3 -0.474 26.4-112.4 -85.2 158.4 -4.5 -7.9 -6.8 23 23 A I T 4 S+ 0 0 5 31,-2.6 4,-0.3 1,-0.2 32,-0.1 0.835 120.9 45.4 -58.0 -32.8 -1.7 -6.7 -4.5 24 24 A E T >4 S+ 0 0 125 2,-0.2 3,-1.2 1,-0.2 4,-0.4 0.887 109.7 52.9 -77.9 -40.8 0.3 -5.6 -7.5 25 25 A N T >4 S+ 0 0 96 1,-0.3 3,-1.2 2,-0.2 4,-0.4 0.851 103.2 58.7 -62.9 -34.8 -2.7 -4.0 -9.3 26 26 A V T >X S+ 0 0 17 -4,-2.3 4,-1.7 1,-0.2 3,-0.6 0.668 83.1 84.7 -69.3 -15.7 -3.3 -1.9 -6.1 27 27 A K H <> S+ 0 0 85 -3,-1.2 4,-1.2 -4,-0.3 -1,-0.2 0.837 86.2 55.6 -55.5 -33.0 0.2 -0.5 -6.4 28 28 A A H <> S+ 0 0 66 -3,-1.2 4,-0.6 -4,-0.4 -1,-0.3 0.868 103.3 54.4 -68.2 -36.4 -1.2 2.1 -8.8 29 29 A K H X4 S+ 0 0 45 -3,-0.6 3,-1.2 -4,-0.4 -2,-0.2 0.911 106.3 50.6 -64.0 -43.5 -3.8 3.3 -6.3 30 30 A I H >< S+ 0 0 40 -4,-1.7 3,-1.5 1,-0.3 4,-0.5 0.822 100.7 64.2 -64.8 -30.4 -1.1 3.9 -3.6 31 31 A Q H 3X S+ 0 0 131 -4,-1.2 4,-1.2 1,-0.3 -1,-0.3 0.726 78.8 86.0 -65.2 -20.8 0.8 6.0 -6.1 32 32 A D T << S+ 0 0 151 -3,-1.2 -1,-0.3 -4,-0.6 -2,-0.2 0.743 87.1 55.1 -52.0 -24.8 -2.1 8.4 -6.2 33 33 A K T <4 S- 0 0 83 -3,-1.5 -1,-0.2 -4,-0.2 -2,-0.2 0.989 135.0 -56.4 -73.9 -73.5 -0.5 10.1 -3.2 34 34 A E T 4 S- 0 0 139 -4,-0.5 -2,-0.1 0, 0.0 -3,-0.1 0.046 79.2 -79.8-167.1 41.4 3.1 11.0 -4.3 35 35 A G < - 0 0 25 -4,-1.2 -4,-0.1 1,-0.2 -3,-0.0 0.959 47.3-136.3 53.0 87.8 4.9 7.9 -5.5 36 36 A I - 0 0 50 1,-0.2 -1,-0.2 -6,-0.1 5,-0.1 -0.652 14.0-163.7 -78.5 110.8 6.1 6.1 -2.4 37 37 A P + 0 0 105 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 0.916 59.6 105.1 -59.9 -47.0 9.7 5.0 -2.9 38 38 A P > - 0 0 20 0, 0.0 3,-1.1 0, 0.0 -2,-0.1 -0.113 50.3-172.5 -41.1 96.2 9.8 2.5 0.0 39 39 A D T 3 S+ 0 0 91 1,-0.3 -3,-0.0 -2,-0.2 0, 0.0 0.710 81.6 59.2 -68.2 -20.3 9.5 -0.7 -1.9 40 40 A Q T 3 S+ 0 0 152 2,-0.0 2,-0.7 10,-0.0 -1,-0.3 -0.081 74.6 129.9-100.0 34.4 9.1 -2.6 1.4 41 41 A Q < + 0 0 24 -3,-1.1 2,-0.3 -5,-0.1 30,-0.0 -0.801 28.8 138.8 -93.2 115.3 6.0 -0.7 2.4 42 42 A R - 0 0 102 -2,-0.7 28,-1.0 8,-0.1 2,-0.3 -0.850 49.5 -91.2-144.0 178.9 3.2 -3.1 3.4 43 43 A L B -C 69 0C 14 5,-0.3 2,-0.9 -2,-0.3 5,-0.5 -0.677 25.1-132.3 -97.8 152.7 0.4 -3.5 6.0 44 44 A I + 0 0 120 24,-3.5 2,-0.3 -2,-0.3 24,-0.1 -0.665 63.1 113.1-104.6 77.1 0.7 -5.4 9.3 45 45 A F S S- 0 0 106 -2,-0.9 3,-0.2 3,-0.2 -2,-0.1 -0.899 88.2 -18.1-150.8 117.0 -2.4 -7.6 9.4 46 46 A A S S- 0 0 73 -2,-0.3 -2,-0.1 1,-0.2 -3,-0.0 0.820 114.1 -73.3 58.6 32.1 -2.5 -11.4 9.2 47 47 A G S S+ 0 0 71 1,-0.2 2,-0.5 0, 0.0 -1,-0.2 0.950 76.8 175.0 46.5 68.2 1.1 -11.4 7.9 48 48 A K - 0 0 13 -5,-0.5 2,-0.5 -3,-0.2 -5,-0.3 -0.916 24.2-141.6-110.0 127.5 0.3 -10.2 4.4 49 49 A Q - 0 0 87 -2,-0.5 5,-0.4 1,-0.1 -26,-0.1 -0.743 7.5-164.7 -89.2 126.5 3.1 -9.3 1.9 50 50 A L S S+ 0 0 28 -2,-0.5 -1,-0.1 1,-0.2 -23,-0.1 0.741 90.5 52.8 -79.1 -24.5 2.5 -6.3 -0.3 51 51 A E S S+ 0 0 111 2,-0.1 -1,-0.2 -11,-0.0 -2,-0.0 0.851 94.2 86.1 -78.9 -36.2 5.3 -7.3 -2.7 52 52 A D S S- 0 0 84 1,-0.1 -4,-0.0 -29,-0.0 0, 0.0 0.298 91.2-107.6 -49.1-171.6 3.9 -10.8 -3.3 53 53 A G S S+ 0 0 37 -30,-0.1 2,-0.2 -29,-0.1 -1,-0.1 -0.195 70.7 127.8-118.9 40.6 1.3 -11.5 -5.9 54 54 A R - 0 0 147 -5,-0.4 -31,-2.6 -32,-0.1 2,-0.2 -0.650 52.2-126.6 -97.7 155.2 -1.7 -12.2 -3.7 55 55 A T B > -B 22 0B 35 -33,-0.3 4,-0.6 -2,-0.2 3,-0.3 -0.654 17.4-121.6 -99.1 156.6 -5.1 -10.5 -4.0 56 56 A L T >4>S+ 0 0 19 -35,-1.9 5,-1.7 -2,-0.2 3,-1.1 0.859 110.6 61.1 -62.4 -36.5 -7.0 -8.7 -1.2 57 57 A S G >45S+ 0 0 79 -36,-0.4 3,-2.5 -38,-0.3 -1,-0.2 0.887 93.9 62.0 -58.7 -42.1 -10.0 -11.1 -1.6 58 58 A D G 345S+ 0 0 61 -3,-0.3 -1,-0.3 1,-0.3 -2,-0.2 0.767 104.5 49.8 -57.3 -25.2 -7.8 -14.1 -0.7 59 59 A Y G <<5S- 0 0 88 -3,-1.1 -1,-0.3 -4,-0.6 -2,-0.2 0.250 112.2-120.2 -97.7 12.8 -7.3 -12.5 2.7 60 60 A N T < 5 + 0 0 129 -3,-2.5 2,-1.1 1,-0.2 -3,-0.2 0.788 58.3 157.2 54.8 28.7 -11.0 -11.9 3.3 61 61 A I < + 0 0 28 -5,-1.7 -1,-0.2 4,-0.1 2,-0.1 -0.719 15.5 175.1 -89.5 96.3 -10.2 -8.2 3.5 62 62 A Q > - 0 0 138 -2,-1.1 3,-0.7 1,-0.2 -5,-0.0 -0.426 41.0 -62.4 -95.0 172.7 -13.4 -6.4 2.7 63 63 A K T 3 S+ 0 0 116 1,-0.2 -1,-0.2 -2,-0.1 -60,-0.2 -0.045 122.0 29.9 -50.1 155.1 -14.2 -2.6 2.8 64 64 A E T 3 S+ 0 0 118 -62,-3.2 -1,-0.2 1,-0.1 -61,-0.2 0.729 92.0 151.3 63.8 22.0 -14.0 -0.9 6.1 65 65 A S < - 0 0 29 -3,-0.7 2,-0.8 -63,-0.2 -61,-0.5 -0.137 56.7-103.8 -75.7 177.5 -11.3 -3.4 7.1 66 66 A T + 0 0 88 -63,-0.1 2,-0.7 -3,-0.1 -1,-0.1 -0.717 47.7 168.2-107.1 81.0 -8.5 -2.7 9.6 67 67 A L - 0 0 23 -2,-0.8 2,-0.5 -63,-0.3 -61,-0.2 -0.841 10.4-173.6 -98.8 110.5 -5.4 -2.2 7.4 68 68 A H - 0 0 90 -2,-0.7 -24,-3.5 -63,-0.1 2,-0.1 -0.901 6.2-159.2-107.1 125.1 -2.5 -0.7 9.3 69 69 A L B -C 43 0C 21 -2,-0.5 2,-0.4 -26,-0.3 -26,-0.2 -0.389 21.4-104.2 -94.0 174.7 0.7 0.3 7.4 70 70 A V - 0 0 67 -28,-1.0 2,-0.3 -2,-0.1 -62,-0.1 -0.817 29.7-116.9-103.8 141.3 4.2 0.8 8.7 71 71 A L - 0 0 99 -2,-0.4 2,-0.9 1,-0.1 3,-0.4 -0.586 14.0-146.5 -77.3 130.9 5.9 4.1 9.3 72 72 A R + 0 0 116 -2,-0.3 -1,-0.1 1,-0.2 -64,-0.1 -0.379 58.5 123.6 -93.3 55.7 8.9 4.8 7.1 73 73 A L + 0 0 157 -2,-0.9 2,-0.6 1,-0.1 -1,-0.2 0.908 62.8 59.5 -80.2 -45.2 10.8 6.9 9.7 74 74 A R - 0 0 216 -3,-0.4 -1,-0.1 1,-0.2 0, 0.0 -0.768 60.9-173.5 -90.0 119.7 14.0 4.8 9.7 75 75 A G 0 0 45 -2,-0.6 -1,-0.2 1,-0.0 -2,-0.0 0.901 360.0 360.0 -77.6 -42.5 15.7 4.6 6.3 76 76 A G 0 0 132 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 0.154 360.0 360.0 105.9 360.0 18.3 2.0 7.3