==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 14-DEC-01 1KM7 . COMPND 2 MOLECULE: GABA(A) RECEPTOR ASSOCIATED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.KOUNO,K.MIURA,M.TADA,T.KANEMATSU,S.TATE,M.SHIRAKAWA, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7204.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 18.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 18 A G > 0 0 33 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -34.7 -4.2 15.1 6.0 2 19 A E H > + 0 0 143 1,-0.2 4,-1.3 2,-0.2 0, 0.0 0.924 360.0 40.6 -59.8 -42.0 -4.9 18.9 5.5 3 20 A K H > S+ 0 0 128 2,-0.2 4,-2.1 1,-0.2 5,-0.4 0.864 110.6 58.3 -75.6 -33.7 -1.4 19.7 6.8 4 21 A I H > S+ 0 0 48 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.867 109.4 45.0 -64.9 -32.3 0.2 16.7 5.0 5 22 A R H < S+ 0 0 65 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.824 107.8 58.1 -81.2 -28.5 -1.1 18.1 1.6 6 23 A K H < S+ 0 0 159 -4,-1.3 -2,-0.2 -5,-0.2 -1,-0.2 0.947 122.9 24.6 -65.3 -44.4 0.0 21.7 2.5 7 24 A K H < S+ 0 0 123 -4,-2.1 3,-0.2 1,-0.2 -2,-0.2 0.878 138.1 32.1 -85.9 -42.2 3.6 20.5 2.9 8 25 A Y >< + 0 0 93 -4,-2.3 3,-1.0 -5,-0.4 -1,-0.2 -0.586 67.5 151.0-116.4 70.7 3.4 17.4 0.6 9 26 A P T 3 S+ 0 0 90 0, 0.0 -1,-0.2 0, 0.0 -3,-0.1 0.831 78.5 46.6 -69.4 -32.4 0.8 18.5 -2.0 10 27 A D T 3 S+ 0 0 103 -3,-0.2 26,-2.2 -5,-0.1 27,-0.3 0.305 98.6 95.2 -92.9 11.6 2.4 16.2 -4.7 11 28 A R E < -A 35 0A 105 -3,-1.0 22,-0.1 24,-0.2 -3,-0.0 -0.479 67.1-137.6 -96.8 171.8 2.6 13.2 -2.2 12 29 A V E -A 34 0A 0 22,-2.5 22,-1.7 -2,-0.1 2,-1.1 -0.835 7.0-156.3-134.4 97.9 0.1 10.3 -1.8 13 30 A P E -A 33 0A 4 0, 0.0 75,-1.5 0, 0.0 2,-0.3 -0.586 22.0-169.0 -74.1 98.5 -0.7 9.2 1.8 14 31 A V E -Ab 32 88A 0 18,-2.9 18,-1.7 -2,-1.1 2,-0.3 -0.677 14.9-135.7 -92.5 146.9 -1.8 5.6 1.3 15 32 A I E -Ab 31 89A 64 73,-2.4 75,-2.2 -2,-0.3 2,-0.4 -0.777 18.1-150.5 -99.0 142.8 -3.5 3.5 4.1 16 33 A V E + b 0 90A 4 14,-2.5 2,-0.2 -2,-0.3 75,-0.2 -0.935 25.1 151.0-119.8 138.2 -2.3 -0.1 4.5 17 34 A E E - b 0 91A 103 73,-1.8 75,-1.2 -2,-0.4 2,-0.3 -0.844 35.7-106.8-146.6-178.0 -4.4 -3.0 5.8 18 35 A K E - b 0 92A 52 73,-0.3 75,-0.2 -2,-0.2 3,-0.1 -0.818 33.0-100.5-118.5 161.3 -4.6 -6.8 5.5 19 36 A A > - 0 0 22 73,-1.9 3,-1.5 -2,-0.3 2,-0.5 -0.059 65.9 -60.7 -66.2 178.0 -7.0 -9.2 3.7 20 37 A P T 3 S- 0 0 125 0, 0.0 -1,-0.2 0, 0.0 73,-0.0 -0.482 122.9 -14.5 -66.0 114.0 -9.7 -11.1 5.7 21 38 A K T 3 S- 0 0 207 -2,-0.5 -2,-0.1 -3,-0.1 72,-0.0 0.918 95.6-180.0 58.1 44.1 -7.8 -13.2 8.3 22 39 A A < - 0 0 26 -3,-1.5 71,-0.1 70,-0.1 -4,-0.1 -0.059 22.5-156.9 -66.4 176.3 -4.5 -12.7 6.4 23 40 A R + 0 0 175 0, 0.0 -1,-0.1 0, 0.0 70,-0.1 -0.010 38.8 133.3-149.7 37.8 -1.3 -14.3 7.7 24 41 A I - 0 0 22 68,-0.2 28,-0.1 1,-0.2 70,-0.1 -0.180 63.3 -70.1 -83.7-179.2 1.7 -12.3 6.3 25 42 A G - 0 0 28 26,-0.6 27,-0.2 1,-0.1 -1,-0.2 0.142 67.6 -68.8 -60.8-175.0 4.7 -11.1 8.4 26 43 A D - 0 0 119 26,-0.1 2,-0.4 1,-0.0 -1,-0.1 -0.123 48.4-132.3 -70.3 173.7 4.6 -8.4 11.1 27 44 A L - 0 0 22 1,-0.1 24,-0.1 24,-0.1 3,-0.1 -0.993 16.3-165.1-134.8 138.2 4.0 -4.7 10.2 28 45 A D S S- 0 0 112 22,-0.4 2,-0.3 -2,-0.4 -1,-0.1 0.885 79.2 -9.3 -86.4 -41.9 5.8 -1.5 11.3 29 46 A K - 0 0 76 21,-0.1 -1,-0.3 1,-0.0 3,-0.0 -0.991 49.0-142.5-152.8 157.8 3.2 1.0 10.1 30 47 A K S S+ 0 0 112 -2,-0.3 -14,-2.5 -3,-0.1 2,-0.3 -0.193 81.3 71.0-116.8 43.0 -0.1 1.1 8.1 31 48 A K E -A 15 0A 141 -16,-0.3 2,-0.4 2,-0.0 -16,-0.2 -0.782 58.2-170.4-158.6 108.0 0.4 4.4 6.3 32 49 A Y E -A 14 0A 16 -18,-1.7 -18,-2.9 -2,-0.3 2,-0.9 -0.852 13.3-152.0-106.0 138.7 2.9 5.2 3.5 33 50 A L E +A 13 0A 92 -2,-0.4 -2,-0.0 -20,-0.2 -18,-0.0 -0.806 31.3 163.9-107.1 91.9 3.7 8.6 2.2 34 51 A V E -A 12 0A 5 -22,-1.7 -22,-2.5 -2,-0.9 -2,-0.0 -0.859 39.5-106.8-112.2 147.7 4.8 8.1 -1.4 35 52 A P E > -A 11 0A 47 0, 0.0 3,-1.5 0, 0.0 40,-0.4 -0.273 29.2-115.6 -67.4 153.6 5.1 10.6 -4.2 36 53 A S T 3 S+ 0 0 39 -26,-2.2 39,-1.1 1,-0.3 40,-0.6 0.743 114.2 60.3 -63.6 -21.2 2.5 10.6 -7.1 37 54 A D T 3 S+ 0 0 136 -27,-0.3 -1,-0.3 38,-0.1 -26,-0.1 0.626 78.2 112.5 -83.3 -11.5 5.3 9.7 -9.6 38 55 A L < - 0 0 27 -3,-1.5 36,-2.5 35,-0.1 37,-0.4 -0.330 62.0-137.6 -61.7 141.8 6.2 6.4 -7.7 39 56 A T B > -E 73 0B 63 34,-0.3 4,-1.8 35,-0.1 34,-0.3 -0.348 24.7-102.5 -91.4 177.3 5.4 3.3 -9.7 40 57 A V H > S+ 0 0 28 32,-1.6 4,-2.5 30,-0.3 5,-0.2 0.902 120.9 56.6 -68.6 -38.2 3.8 0.0 -8.4 41 58 A G H > S+ 0 0 38 29,-0.5 4,-1.0 31,-0.3 -1,-0.2 0.896 107.3 49.1 -61.4 -38.3 7.3 -1.8 -8.4 42 59 A Q H >> S+ 0 0 109 2,-0.2 4,-1.6 1,-0.2 3,-0.8 0.965 112.2 46.3 -67.3 -49.4 8.7 1.0 -6.1 43 60 A F H 3X S+ 0 0 7 -4,-1.8 4,-1.8 1,-0.2 5,-0.3 0.894 106.6 60.3 -61.0 -35.5 5.8 0.8 -3.6 44 61 A Y H 3X S+ 0 0 58 -4,-2.5 4,-1.6 1,-0.2 -1,-0.2 0.840 104.0 51.7 -61.8 -29.0 6.1 -3.0 -3.7 45 62 A F H <>S+ 0 0 111 -4,-1.6 5,-1.5 -5,-0.3 3,-0.5 0.910 105.9 35.9 -41.1 -55.9 8.0 -5.9 1.2 49 66 A K H ><5S+ 0 0 112 -4,-1.2 3,-1.7 1,-0.2 -1,-0.3 0.882 114.2 58.0 -69.7 -34.4 10.3 -5.3 4.1 50 67 A R H 3<5S+ 0 0 84 -4,-0.8 -22,-0.4 1,-0.3 -1,-0.2 0.739 102.2 55.9 -68.1 -18.1 7.5 -3.8 6.2 51 68 A I T <<5S- 0 0 0 -4,-2.1 -26,-0.6 -3,-0.5 -1,-0.3 0.395 111.9-122.2 -92.8 4.9 5.6 -7.1 5.7 52 69 A H T < 5S+ 0 0 145 -3,-1.7 2,-0.3 -5,-0.2 -3,-0.2 0.813 70.8 130.4 60.6 29.2 8.6 -9.1 7.2 53 70 A L < + 0 0 18 -5,-1.5 2,-0.3 -28,-0.1 -1,-0.2 -0.804 24.0 145.3-112.9 155.0 8.8 -11.1 4.0 54 71 A R > + 0 0 203 -2,-0.3 3,-1.3 -3,-0.1 2,-1.0 -0.947 45.0 32.2-165.6-173.6 11.9 -11.8 1.9 55 72 A A T 3 S- 0 0 99 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.272 129.6 -17.6 52.0 -92.6 13.7 -14.3 -0.4 56 73 A E T 3 S+ 0 0 182 -2,-1.0 -1,-0.2 2,-0.0 -3,-0.0 -0.121 89.7 146.4-137.6 42.7 10.7 -16.1 -2.0 57 74 A D < - 0 0 72 -3,-1.3 2,-0.4 1,-0.1 -4,-0.1 -0.182 46.9-113.1 -72.6 173.0 7.6 -15.4 0.1 58 75 A A + 0 0 46 2,-0.0 2,-0.3 37,-0.0 -1,-0.1 -0.885 42.7 155.0-110.9 139.1 4.1 -15.0 -1.4 59 76 A L - 0 0 18 -2,-0.4 2,-0.3 -35,-0.1 35,-0.2 -0.980 19.0-172.0-161.0 147.7 2.2 -11.7 -1.4 60 77 A F E -C 93 0A 87 33,-1.5 33,-1.5 -2,-0.3 2,-0.4 -0.944 18.5-140.0-146.8 121.0 -0.6 -10.0 -3.4 61 78 A F E -C 92 0A 20 -2,-0.3 2,-0.5 31,-0.2 31,-0.3 -0.670 14.8-168.5 -84.6 131.9 -1.8 -6.3 -3.0 62 79 A F E -C 91 0A 39 29,-3.0 29,-1.8 -2,-0.4 2,-0.5 -0.956 6.7-179.3-120.3 115.4 -5.5 -5.7 -3.2 63 80 A V B > S-F 66 0C 13 3,-1.7 3,-0.7 -2,-0.5 27,-0.2 -0.954 71.4 -18.0-119.9 121.2 -6.6 -2.0 -3.5 64 81 A N T 3 S- 0 0 64 -2,-0.5 -1,-0.2 25,-0.3 3,-0.1 0.888 126.6 -55.9 55.1 38.7 -10.3 -1.0 -3.7 65 82 A N T 3 S+ 0 0 162 1,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.851 119.0 109.1 63.7 33.9 -11.1 -4.7 -4.7 66 83 A V B < -F 63 0C 55 -3,-0.7 -3,-1.7 15,-0.0 -1,-0.2 -0.882 52.0-162.1-134.1 167.8 -8.7 -4.5 -7.7 67 84 A I - 0 0 105 -2,-0.3 -5,-0.1 -5,-0.2 -3,-0.0 -0.504 20.3-179.8-152.8 74.2 -5.2 -6.0 -8.6 68 85 A P - 0 0 60 0, 0.0 -7,-0.1 0, 0.0 4,-0.1 -0.307 30.7-103.2 -74.9 161.6 -3.6 -4.1 -11.4 69 86 A P - 0 0 96 0, 0.0 3,-0.1 0, 0.0 -29,-0.1 -0.014 43.4 -88.7 -72.8-177.1 -0.1 -5.0 -12.9 70 87 A T S S+ 0 0 93 1,-0.2 -29,-0.5 -30,-0.1 -30,-0.3 0.192 103.8 98.2 -82.7 21.9 3.1 -3.1 -12.1 71 88 A S S S+ 0 0 109 -31,-0.1 2,-0.2 -32,-0.1 -1,-0.2 -0.239 74.0 69.2-101.2 45.3 2.4 -0.7 -15.0 72 89 A A - 0 0 15 -2,-0.2 -32,-1.6 -3,-0.1 2,-0.3 -0.806 69.6-125.6-145.2-174.3 0.9 2.0 -12.8 73 90 A T B > -E 39 0B 34 -34,-0.3 4,-1.5 -2,-0.2 -34,-0.3 -0.926 22.6-117.5-138.8 164.0 1.9 4.6 -10.1 74 91 A M H > S+ 0 0 4 -36,-2.5 4,-1.4 -39,-0.3 -38,-0.2 0.907 112.6 53.5 -69.6 -41.1 0.8 5.6 -6.6 75 92 A G H > S+ 0 0 15 -39,-1.1 4,-0.8 -37,-0.4 3,-0.4 0.940 110.5 45.9 -61.3 -46.4 -0.3 9.1 -7.6 76 93 A Q H > S+ 0 0 83 -40,-0.6 4,-0.8 1,-0.2 3,-0.3 0.878 108.7 56.8 -66.7 -33.7 -2.6 7.8 -10.3 77 94 A L H X S+ 0 0 16 -4,-1.5 4,-2.9 1,-0.2 -1,-0.2 0.817 91.0 74.6 -67.3 -27.2 -4.0 5.1 -8.0 78 95 A Y H < S+ 0 0 26 -4,-1.4 4,-0.3 -3,-0.4 -1,-0.2 0.956 101.9 38.7 -50.3 -54.2 -5.0 7.9 -5.5 79 96 A Q H < S+ 0 0 164 -4,-0.8 -1,-0.3 -3,-0.3 -2,-0.2 0.756 124.3 44.2 -68.7 -22.7 -8.0 9.0 -7.8 80 97 A E H < S+ 0 0 96 -4,-0.8 -2,-0.2 -3,-0.2 -3,-0.2 0.947 125.0 23.6 -87.5 -61.8 -8.7 5.3 -8.5 81 98 A H S < S+ 0 0 15 -4,-2.9 8,-1.8 -5,-0.1 -17,-0.2 -0.074 86.9 142.7 -99.3 38.2 -8.5 3.3 -5.2 82 99 A H B -D 88 0A 101 -4,-0.3 6,-0.2 6,-0.2 2,-0.2 -0.242 33.3-160.1 -69.9 164.9 -9.2 6.3 -2.8 83 100 A E - 0 0 87 4,-1.2 3,-0.1 1,-0.5 -2,-0.0 -0.641 51.3 -44.2-152.8 91.1 -11.3 5.7 0.3 84 101 A E S S+ 0 0 142 -2,-0.2 -1,-0.5 1,-0.1 0, 0.0 0.499 113.3 11.4 62.4 145.4 -13.0 8.6 2.1 85 102 A D S S- 0 0 138 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.1 -0.165 117.8 -56.4 53.0-148.1 -11.2 12.0 2.8 86 103 A F S S+ 0 0 79 -3,-0.1 -3,-0.2 -4,-0.1 -1,-0.2 0.882 109.5 94.1 -92.9 -46.8 -7.9 12.3 0.9 87 104 A F - 0 0 68 -5,-0.1 -4,-1.2 -73,-0.1 -73,-0.2 -0.102 67.4-143.1 -46.2 139.5 -6.0 9.2 2.2 88 105 A L E -bD 14 82A 0 -75,-1.5 -73,-2.4 -6,-0.2 2,-0.4 -0.568 12.3-122.2-101.1 168.5 -6.4 6.2 -0.2 89 106 A Y E +b 15 0A 56 -8,-1.8 2,-0.3 -75,-0.2 -25,-0.3 -0.936 29.0 171.3-119.7 137.0 -6.7 2.5 1.0 90 107 A I E -b 16 0A 3 -75,-2.2 -73,-1.8 -2,-0.4 2,-0.3 -0.995 5.0-179.4-137.8 143.3 -4.5 -0.5 0.1 91 108 A A E -bC 17 62A 1 -29,-1.8 -29,-3.0 -2,-0.3 2,-0.3 -0.900 4.3-165.6-137.4 167.5 -4.4 -4.1 1.6 92 109 A Y E -bC 18 61A 0 -75,-1.2 -73,-1.9 -2,-0.3 2,-0.2 -0.992 3.6-168.9-152.8 161.2 -2.4 -7.3 1.0 93 110 A S E - C 0 60A 10 -33,-1.5 -33,-1.5 -2,-0.3 3,-0.1 -0.797 37.6-106.3-139.3-178.2 -2.4 -11.1 1.8 94 111 A D S S+ 0 0 10 -2,-0.2 2,-0.3 -35,-0.2 -1,-0.0 0.677 97.8 7.1 -88.9 -18.0 -0.1 -14.1 1.6 95 112 A E - 0 0 50 -35,-0.1 -1,-0.2 -37,-0.1 -35,-0.1 -0.994 45.2-161.4-157.9 162.2 -1.8 -15.7 -1.4 96 113 A S + 0 0 70 -2,-0.3 2,-0.2 -37,-0.1 -1,-0.0 -0.096 60.9 97.6-139.8 37.6 -4.6 -15.1 -4.1 97 114 A V S S- 0 0 106 3,-0.1 2,-0.6 1,-0.0 -2,-0.0 -0.726 89.8 -65.1-121.5 172.9 -5.4 -18.6 -5.4 98 115 A Y S S+ 0 0 244 -2,-0.2 2,-0.3 1,-0.0 -2,-0.1 -0.404 105.5 54.7 -60.1 107.7 -8.1 -21.2 -4.7 99 116 A G 0 0 55 -2,-0.6 -1,-0.0 -4,-0.1 -4,-0.0 -0.926 360.0 360.0 166.6-139.3 -7.4 -22.2 -1.0 100 117 A L 0 0 201 -2,-0.3 -3,-0.1 -78,-0.0 -2,-0.0 -0.926 360.0 360.0-108.9 360.0 -7.0 -20.3 2.3