==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 30-JUL-09 2KMK . COMPND 2 MOLECULE: ZINC FINGER PROTEIN GFI-1; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR S.LEE,Z.WU . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6083.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 110 0, 0.0 2,-0.6 0, 0.0 11,-0.2 0.000 360.0 360.0 360.0 163.2 -10.8 -8.9 37.8 2 2 A F E -A 11 0A 81 9,-2.7 9,-2.2 2,-0.0 2,-0.5 -0.823 360.0-160.3 -96.5 122.2 -12.5 -5.6 37.0 3 3 A D E -A 10 0A 91 -2,-0.6 7,-0.2 7,-0.2 2,-0.2 -0.864 20.2-119.1-107.2 133.4 -15.2 -5.8 34.4 4 4 A C - 0 0 3 5,-2.8 5,-0.1 -2,-0.5 13,-0.0 -0.422 13.2-151.5 -66.6 131.0 -16.4 -2.8 32.4 5 5 A K S S+ 0 0 188 -2,-0.2 -1,-0.1 3,-0.1 -2,-0.0 -0.043 84.6 53.5 -95.3 32.1 -20.1 -2.0 33.0 6 6 A I S S+ 0 0 110 3,-0.1 -1,-0.1 0, 0.0 15,-0.0 0.557 122.7 6.8-126.8 -71.2 -20.6 -0.5 29.5 7 7 A C S S- 0 0 69 2,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.938 101.9-110.2 -84.3 -50.7 -19.6 -2.7 26.6 8 8 A G + 0 0 50 1,-0.2 2,-0.3 0, 0.0 -3,-0.1 0.688 64.7 129.6 123.3 52.2 -18.8 -5.8 28.6 9 9 A K - 0 0 137 -5,-0.1 -5,-2.8 8,-0.0 2,-0.3 -0.833 44.8-124.0-128.0 164.1 -15.1 -6.7 28.7 10 10 A S E -A 3 0A 72 -2,-0.3 2,-0.4 -7,-0.2 -7,-0.2 -0.765 12.4-161.0-112.8 159.1 -12.7 -7.6 31.6 11 11 A F E -A 2 0A 28 -9,-2.2 -9,-2.7 -2,-0.3 6,-0.1 -0.984 16.0-154.5-139.2 125.4 -9.4 -6.2 32.9 12 12 A K S S+ 0 0 199 -2,-0.4 2,-0.4 -11,-0.2 -1,-0.1 0.753 91.5 50.0 -68.3 -22.4 -6.9 -7.9 35.2 13 13 A R S > S- 0 0 143 1,-0.1 4,-2.0 -11,-0.1 3,-0.3 -0.958 78.5-139.2-119.5 133.4 -5.7 -4.5 36.3 14 14 A S H > S+ 0 0 51 -2,-0.4 4,-3.3 1,-0.2 -1,-0.1 0.883 108.0 57.3 -57.4 -33.4 -8.1 -1.7 37.5 15 15 A S H > S+ 0 0 60 2,-0.2 4,-2.7 1,-0.2 5,-0.4 0.910 101.7 52.3 -66.4 -39.4 -5.9 0.6 35.5 16 16 A T H > S+ 0 0 73 -3,-0.3 4,-1.7 1,-0.2 -1,-0.2 0.922 113.7 45.8 -64.2 -34.4 -6.4 -1.3 32.2 17 17 A L H X S+ 0 0 17 -4,-2.0 4,-4.2 2,-0.2 5,-0.4 0.940 108.5 57.8 -70.6 -43.4 -10.1 -0.9 33.0 18 18 A S H X S+ 0 0 57 -4,-3.3 4,-2.3 2,-0.2 5,-0.2 0.974 109.9 41.3 -49.9 -62.6 -9.5 2.8 33.8 19 19 A T H X S+ 0 0 35 -4,-2.7 4,-1.2 1,-0.2 -1,-0.2 0.909 116.2 53.0 -54.2 -36.6 -8.0 3.5 30.4 20 20 A H H >X S+ 0 0 18 -4,-1.7 4,-1.5 -5,-0.4 3,-1.0 0.962 106.5 48.9 -65.5 -46.4 -10.8 1.3 29.0 21 21 A L H 3X S+ 0 0 65 -4,-4.2 4,-3.0 1,-0.3 -1,-0.2 0.867 107.0 59.7 -60.9 -27.7 -13.5 3.3 30.8 22 22 A L H 3X>S+ 0 0 47 -4,-2.3 5,-1.3 -5,-0.4 4,-0.9 0.830 95.4 61.7 -70.0 -27.3 -11.7 6.3 29.3 23 23 A I H <<5S+ 0 0 81 -4,-1.2 -1,-0.2 -3,-1.0 -2,-0.2 0.945 110.6 38.9 -65.4 -40.0 -12.5 4.7 25.9 24 24 A H H <5S+ 0 0 62 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.959 121.3 42.7 -73.2 -47.3 -16.2 5.1 26.7 25 25 A S H <5S- 0 0 66 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 0.555 103.3-139.1 -73.9 -3.3 -15.8 8.5 28.4 26 26 A D T <5 + 0 0 109 -4,-0.9 2,-0.7 -5,-0.2 -3,-0.2 0.948 33.0 177.0 44.4 63.5 -13.4 9.4 25.5 27 27 A T < + 0 0 56 -5,-1.3 -1,-0.2 -8,-0.2 -2,-0.1 -0.854 11.5 165.1-101.3 111.9 -10.9 11.2 27.9 28 28 A R + 0 0 76 -2,-0.7 12,-0.2 1,-0.1 11,-0.2 -0.599 6.3 161.9-126.0 72.0 -7.8 12.4 26.0 29 29 A P + 0 0 88 0, 0.0 11,-0.2 0, 0.0 -1,-0.1 0.314 58.7 84.5 -73.9 12.1 -6.0 14.9 28.2 30 30 A Y E -B 39 0B 84 9,-1.9 9,-2.8 -3,-0.0 2,-0.4 -0.773 64.4-173.7-117.2 87.1 -2.8 14.5 26.1 31 31 A P E -B 38 0B 77 0, 0.0 7,-0.3 0, 0.0 6,-0.2 -0.656 31.2-107.7 -85.0 131.1 -3.1 16.9 23.2 32 32 A C - 0 0 9 5,-3.4 4,-0.2 -2,-0.4 14,-0.1 -0.187 19.6-140.4 -51.5 140.6 -0.5 16.9 20.4 33 33 A Q S S+ 0 0 120 2,-0.1 -1,-0.2 3,-0.1 -3,-0.0 0.700 93.8 24.4 -80.2 -17.3 1.7 20.0 20.6 34 34 A Y S S+ 0 0 120 3,-0.0 -2,-0.0 1,-0.0 15,-0.0 0.760 133.2 23.3-110.6 -76.8 1.7 20.3 16.8 35 35 A C S S- 0 0 75 1,-0.1 -3,-0.1 -4,-0.0 -2,-0.1 0.233 96.7-128.8 -81.8 21.0 -1.2 18.7 14.8 36 36 A G + 0 0 36 -4,-0.2 -1,-0.1 -5,-0.1 -4,-0.1 0.558 51.0 157.1 48.5 9.5 -3.3 19.0 18.0 37 37 A K - 0 0 128 -6,-0.2 -5,-3.4 1,-0.1 2,-0.4 -0.056 36.3-129.5 -54.3 175.0 -4.5 15.3 17.9 38 38 A R E -B 31 0B 171 -7,-0.3 2,-0.3 -9,-0.0 -1,-0.1 -0.990 25.6-179.0-134.1 131.6 -5.5 14.0 21.3 39 39 A F E -B 30 0B 43 -9,-2.8 -9,-1.9 -2,-0.4 3,-0.1 -0.815 28.0-140.4-123.4 165.1 -4.4 10.8 23.1 40 40 A H S S+ 0 0 51 -2,-0.3 2,-0.4 -12,-0.2 -12,-0.1 0.237 86.9 59.9-109.0 12.8 -5.3 9.3 26.5 41 41 A Q S >> S- 0 0 68 1,-0.2 4,-2.5 -11,-0.2 3,-0.6 -0.897 71.2-144.4-144.8 113.4 -1.7 8.1 27.4 42 42 A K H >> S+ 0 0 109 -2,-0.4 4,-3.6 1,-0.3 3,-0.6 0.906 101.1 46.5 -37.9 -72.2 1.3 10.4 27.8 43 43 A S H 3> S+ 0 0 72 1,-0.3 4,-2.6 2,-0.2 -1,-0.3 0.858 111.2 54.3 -47.4 -35.0 4.0 8.1 26.4 44 44 A D H <> S+ 0 0 47 -3,-0.6 4,-1.5 2,-0.2 -1,-0.3 0.959 113.3 41.9 -67.9 -40.3 1.6 7.3 23.5 45 45 A M H X S+ 0 0 14 -4,-1.5 4,-1.9 -3,-0.2 3,-1.4 0.996 106.1 51.4 -68.2 -66.3 3.3 11.0 18.7 49 49 A T H 3X S+ 0 0 1 -4,-3.0 4,-1.2 1,-0.3 5,-0.2 0.820 110.1 54.2 -38.9 -33.0 5.3 14.2 19.3 50 50 A F H 3X>S+ 0 0 33 -4,-1.9 4,-3.0 -5,-0.4 5,-1.0 0.907 95.6 62.0 -75.2 -37.8 8.3 12.1 18.2 51 51 A I H <<5S+ 0 0 100 -4,-1.7 -2,-0.2 -3,-1.4 -1,-0.2 0.915 116.0 39.2 -59.1 -24.1 6.6 11.2 14.9 52 52 A H H <5S+ 0 0 63 -4,-1.9 -2,-0.2 1,-0.1 -3,-0.1 0.758 115.8 43.5 -80.1-103.1 6.8 14.9 14.5 53 53 A T H <5S- 0 0 78 -4,-1.2 -3,-0.2 1,-0.2 -2,-0.2 0.586 113.5-116.2 -8.7 -37.0 10.2 15.9 16.0 54 54 A G T <5 + 0 0 56 -4,-3.0 2,-0.5 -5,-0.2 -1,-0.2 0.644 58.1 160.1 99.0 21.2 11.5 12.9 14.0 55 55 A E < + 0 0 78 -5,-1.0 -1,-0.2 -6,-0.2 3,-0.1 -0.651 14.0 168.4 -82.5 125.6 12.6 10.9 17.1 56 56 A K + 0 0 115 -2,-0.5 11,-0.3 1,-0.1 12,-0.2 -0.645 2.3 170.8-134.7 73.9 13.1 7.1 16.6 57 57 A P + 0 0 82 0, 0.0 2,-1.0 0, 0.0 11,-0.2 0.573 61.3 83.6 -61.1 -11.1 14.9 5.8 19.8 58 58 A H E -C 67 0C 61 9,-2.1 9,-2.6 -3,-0.1 2,-0.6 -0.745 63.8-176.7 -99.6 93.2 14.3 2.2 18.7 59 59 A K E -C 66 0C 139 -2,-1.0 2,-0.6 7,-0.3 7,-0.3 -0.778 20.1-143.7 -93.9 123.3 17.1 1.4 16.2 60 60 A C > - 0 0 9 5,-3.4 4,-0.6 -2,-0.6 5,-0.5 -0.679 5.0-159.9 -80.4 121.1 17.0 -2.0 14.5 61 61 A Q T 4 S+ 0 0 160 -2,-0.6 -1,-0.1 1,-0.2 5,-0.1 0.273 82.4 71.7 -85.6 14.8 20.7 -3.1 14.2 62 62 A V T 4 S+ 0 0 90 3,-0.2 -1,-0.2 1,-0.0 -2,-0.0 0.900 118.4 2.6 -93.8 -56.9 19.6 -5.5 11.5 63 63 A C T 4 S- 0 0 64 2,-0.1 -2,-0.1 -3,-0.0 3,-0.1 0.093 99.7-106.4-121.2 25.6 18.7 -3.3 8.5 64 64 A G S < S+ 0 0 75 -4,-0.6 2,-0.3 1,-0.2 -3,-0.1 0.811 74.7 137.8 58.5 30.9 19.6 0.2 9.9 65 65 A K - 0 0 112 -5,-0.5 -5,-3.4 2,-0.0 2,-0.3 -0.771 37.9-153.0-107.3 152.7 16.0 1.2 10.4 66 66 A A E -C 59 0C 27 -2,-0.3 2,-0.3 -7,-0.3 -7,-0.3 -0.910 6.5-162.0-126.5 150.5 14.6 3.1 13.4 67 67 A F E -C 58 0C 22 -9,-2.6 -9,-2.1 -2,-0.3 6,-0.0 -0.958 24.4-143.9-134.3 153.4 11.2 3.2 15.1 68 68 A S S S+ 0 0 18 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.882 92.1 48.1 -78.3 -41.1 9.3 5.4 17.5 69 69 A Q S > S- 0 0 80 1,-0.2 4,-1.7 -11,-0.1 -1,-0.1 -0.802 70.6-145.2-103.8 144.7 7.5 2.5 19.2 70 70 A S H > S+ 0 0 50 -2,-0.4 4,-3.9 2,-0.2 5,-0.3 0.960 102.6 60.6 -70.6 -45.7 9.1 -0.7 20.4 71 71 A S H > S+ 0 0 81 1,-0.3 4,-3.0 2,-0.2 5,-0.3 0.922 107.1 46.5 -47.0 -43.2 6.1 -2.7 19.5 72 72 A N H > S+ 0 0 70 2,-0.2 4,-2.2 3,-0.2 -1,-0.3 0.910 115.5 46.3 -69.7 -32.9 6.7 -1.5 16.0 73 73 A L H X S+ 0 0 37 -4,-1.7 4,-4.0 2,-0.2 5,-0.4 0.994 112.0 50.3 -68.9 -57.5 10.4 -2.4 16.5 74 74 A I H X S+ 0 0 80 -4,-3.9 4,-3.2 1,-0.3 -2,-0.2 0.927 115.5 42.1 -42.9 -57.4 9.5 -5.8 18.0 75 75 A T H X S+ 0 0 70 -4,-3.0 4,-1.9 -5,-0.3 -1,-0.3 0.935 114.9 52.0 -59.2 -41.8 7.2 -6.6 15.0 76 76 A H H X S+ 0 0 23 -4,-2.2 4,-1.6 -5,-0.3 -2,-0.2 0.944 113.0 44.0 -59.9 -43.7 9.9 -5.1 12.7 77 77 A S H X S+ 0 0 47 -4,-4.0 4,-3.7 1,-0.2 -1,-0.2 0.901 104.8 64.0 -68.3 -36.4 12.5 -7.4 14.4 78 78 A R H < S+ 0 0 175 -4,-3.2 -1,-0.2 -5,-0.4 -2,-0.2 0.923 100.6 52.7 -54.7 -38.6 9.9 -10.3 14.2 79 79 A K H < S+ 0 0 146 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.961 111.0 45.3 -65.0 -43.9 10.2 -9.9 10.4 80 80 A H H < 0 0 75 -4,-1.6 -2,-0.2 1,-0.2 -1,-0.2 0.954 360.0 360.0 -62.1 -44.4 14.0 -10.2 10.6 81 81 A T < 0 0 144 -4,-3.7 -2,-0.2 -5,-0.1 -1,-0.2 0.968 360.0 360.0 -51.6 360.0 13.6 -13.2 13.0