==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-APR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 10-AUG-09 2KMZ . COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH,H.CU . 53 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5235.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 30.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 237 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -55.7 -8.0 -17.1 8.6 2 2 A Q + 0 0 197 2,-0.1 4,-0.1 0, 0.0 0, 0.0 -0.553 360.0 142.0 -72.6 124.2 -8.0 -15.6 12.1 3 3 A A - 0 0 52 -2,-0.4 2,-2.4 2,-0.2 0, 0.0 -0.954 62.6 -95.6-163.7 143.1 -5.8 -12.5 12.2 4 4 A P S S- 0 0 149 0, 0.0 2,-0.5 0, 0.0 -2,-0.1 -0.336 99.5 -35.2 -61.9 77.2 -5.8 -9.0 13.9 5 5 A G S S+ 0 0 57 -2,-2.4 -2,-0.2 1,-0.2 0, 0.0 -0.939 74.8 146.2 115.4-123.9 -7.3 -7.2 11.0 6 6 A T - 0 0 66 -2,-0.5 -1,-0.2 20,-0.2 -3,-0.1 0.895 33.6-159.2 44.4 104.0 -6.5 -8.1 7.3 7 7 A A - 0 0 35 3,-0.1 2,-2.0 1,-0.0 17,-0.2 -0.671 30.9-100.1-108.4 163.8 -9.6 -7.5 5.2 8 8 A P S S- 0 0 123 0, 0.0 15,-0.1 0, 0.0 -2,-0.0 -0.291 79.6 -74.4 -78.9 54.6 -10.7 -8.9 1.8 9 9 A a S S+ 0 0 53 -2,-2.0 2,-0.3 1,-0.2 3,-0.1 0.933 77.0 159.1 52.2 96.3 -9.6 -5.7 -0.0 10 10 A S - 0 0 59 1,-0.3 3,-0.2 -3,-0.1 -1,-0.2 -0.928 53.2 -4.1-152.7 123.5 -12.2 -3.0 0.7 11 11 A R S S- 0 0 227 -2,-0.3 2,-0.8 1,-0.2 -1,-0.3 0.961 128.6 -24.1 59.2 91.3 -11.9 0.7 0.5 12 12 A G S S+ 0 0 76 -3,-0.1 -1,-0.2 12,-0.1 12,-0.0 -0.707 89.3 130.9 84.6-110.5 -8.3 1.6 -0.4 13 13 A S - 0 0 16 -2,-0.8 2,-0.3 -3,-0.2 11,-0.3 0.135 51.9-113.2 48.1-171.9 -6.0 -1.3 0.6 14 14 A S B -A 23 0A 21 9,-1.8 9,-1.7 26,-0.0 22,-0.2 -0.963 13.5-118.6-160.3 141.0 -3.5 -2.7 -1.8 15 15 A W - 0 0 136 -2,-0.3 2,-0.4 7,-0.2 24,-0.3 -0.279 23.5-142.4 -75.5 164.5 -2.9 -6.0 -3.7 16 16 A S > + 0 0 2 5,-0.3 5,-1.9 1,-0.1 3,-0.0 -0.980 21.8 177.9-136.2 123.1 0.2 -8.1 -3.2 17 17 A A T 5S+ 0 0 65 -2,-0.4 -1,-0.1 3,-0.2 5,-0.1 0.694 76.1 76.9 -92.7 -23.2 2.1 -10.0 -5.9 18 18 A D T 5S+ 0 0 135 1,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.841 126.1 1.6 -55.5 -34.6 4.8 -11.3 -3.6 19 19 A L T 5S- 0 0 95 2,-0.2 -1,-0.2 -3,-0.0 -2,-0.2 0.095 104.3-111.1-141.2 21.4 2.3 -13.8 -2.3 20 20 A D T 5S+ 0 0 112 1,-0.1 2,-0.3 -3,-0.0 -3,-0.2 0.937 74.6 116.1 42.2 80.7 -0.8 -13.1 -4.4 21 21 A K < - 0 0 140 -5,-1.9 -5,-0.3 2,-0.0 -2,-0.2 -0.898 61.1-115.4-172.6 141.9 -3.0 -11.7 -1.7 22 22 A a + 0 0 40 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.404 31.5 177.4 -80.3 158.8 -4.8 -8.4 -0.8 23 23 A M B -A 14 0A 47 -9,-1.7 -9,-1.8 -2,-0.1 4,-0.1 -0.892 26.2-118.6-165.3 131.3 -4.0 -6.4 2.3 24 24 A D - 0 0 49 -2,-0.3 16,-0.1 -11,-0.3 -12,-0.1 0.044 29.8-113.3 -60.6 176.6 -5.1 -3.1 3.7 25 25 A b S > S+ 0 0 25 1,-0.2 2,-1.5 15,-0.1 3,-0.7 0.403 92.8 98.5 -94.3 0.5 -2.8 -0.1 4.3 26 26 A A T 3 S+ 0 0 87 1,-0.2 -1,-0.2 2,-0.1 -20,-0.2 -0.338 79.1 53.4 -85.5 55.6 -3.2 -0.4 8.1 27 27 A S T 3 S+ 0 0 55 -2,-1.5 -1,-0.2 -4,-0.1 10,-0.1 0.126 95.6 59.3-175.9 35.0 0.1 -2.3 8.5 28 28 A c < + 0 0 28 -3,-0.7 -2,-0.1 4,-0.1 6,-0.1 -0.051 54.7 120.0-164.9 45.0 2.9 -0.3 6.8 29 29 A R S S- 0 0 207 2,-0.1 -3,-0.0 12,-0.0 -4,-0.0 -0.002 101.1 -4.0-104.0 27.2 3.1 3.1 8.4 30 30 A A S S+ 0 0 82 -3,-0.0 -2,-0.0 0, 0.0 -1,-0.0 0.145 122.0 70.1 178.9 -37.0 6.7 2.6 9.5 31 31 A R - 0 0 176 2,-0.0 2,-1.0 0, 0.0 -2,-0.1 -0.797 63.9-162.1-106.5 91.6 7.9 -0.9 8.6 32 32 A P + 0 0 112 0, 0.0 -4,-0.1 0, 0.0 3,-0.0 -0.607 43.4 122.5 -76.3 100.8 8.2 -1.2 4.8 33 33 A H + 0 0 170 -2,-1.0 2,-0.3 1,-0.0 3,-0.1 -0.287 48.5 72.0-158.0 61.4 8.2 -5.0 4.1 34 34 A S >> - 0 0 50 1,-0.1 4,-0.7 -6,-0.1 3,-0.7 -0.913 68.9-126.6-174.1 146.1 5.4 -5.9 1.7 35 35 A D H >> S+ 0 0 60 -2,-0.3 3,-1.2 1,-0.2 4,-0.8 0.894 110.0 60.2 -65.2 -41.6 4.4 -5.6 -1.9 36 36 A F H 3> S+ 0 0 14 1,-0.3 4,-1.2 2,-0.2 -1,-0.2 0.724 97.7 62.6 -59.9 -20.2 1.0 -4.1 -1.1 37 37 A c H <> S+ 0 0 11 -3,-0.7 4,-3.2 1,-0.2 -1,-0.3 0.838 93.4 60.7 -73.8 -33.4 3.0 -1.3 0.6 38 38 A L H << S+ 0 0 138 -3,-1.2 -1,-0.2 -4,-0.7 -2,-0.2 0.816 107.1 46.6 -63.1 -30.7 4.6 -0.3 -2.7 39 39 A G H < S+ 0 0 45 -4,-0.8 -1,-0.2 -24,-0.3 -2,-0.2 0.822 117.3 41.7 -80.9 -32.8 1.1 0.4 -4.1 40 40 A b H < S+ 0 0 38 -4,-1.2 3,-0.3 -16,-0.1 -2,-0.2 0.934 110.8 60.0 -78.7 -50.6 -0.1 2.4 -1.0 41 41 A A S < S+ 0 0 61 -4,-3.2 -12,-0.0 1,-0.2 -3,-0.0 0.117 77.1 63.6 -65.6-173.3 3.1 4.4 -0.4 42 42 A A S S- 0 0 96 1,-0.1 -1,-0.2 2,-0.0 -4,-0.1 0.616 116.7 -89.6 68.1 12.0 4.7 6.8 -2.9 43 43 A A - 0 0 70 -3,-0.3 -2,-0.1 1,-0.1 -1,-0.1 0.930 36.3-143.7 48.7 95.3 1.5 8.9 -2.6 44 44 A P S S+ 0 0 107 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.902 81.8 56.0 -52.6 -46.4 -0.9 7.6 -5.3 45 45 A P S S- 0 0 98 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.155 70.2-162.5 -80.5 179.4 -2.3 11.2 -6.0 46 46 A A - 0 0 87 1,-0.1 4,-0.1 4,-0.0 -3,-0.0 -0.965 21.1-103.3-163.9 146.7 -0.3 14.3 -7.0 47 47 A P - 0 0 88 0, 0.0 -1,-0.1 0, 0.0 4,-0.0 0.289 49.9 -88.5 -55.7-167.5 -0.7 18.1 -7.1 48 48 A F S S- 0 0 209 2,-0.1 3,-0.1 0, 0.0 -2,-0.0 0.898 100.7 -34.7 -75.9 -42.7 -1.4 20.0 -10.2 49 49 A R S S- 0 0 233 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.403 106.2 -47.5-143.1 -63.7 2.2 20.5 -11.2 50 50 A L - 0 0 154 -4,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.954 41.3-140.1-176.5 160.6 4.6 21.0 -8.2 51 51 A L - 0 0 124 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.754 22.0-116.7-126.9 173.9 5.1 22.8 -4.9 52 52 A W 0 0 239 -2,-0.2 -2,-0.0 1,-0.2 0, 0.0 -0.800 360.0 360.0-117.1 88.8 8.0 24.4 -3.1 53 53 A P 0 0 182 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.967 360.0 360.0 -51.8 360.0 8.6 22.6 0.3