==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER COLLAGEN TYPE VI FRAGMENT 18-AUG-94 1KNT . COMPND 2 MOLECULE: COLLAGEN TYPE VI; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.ARNOUX,K.MERIGEAU,P.SALUDJIAN,F.NORRIS,K.NORRIS,S.BJORN, . 55 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3864.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 49.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 21.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A T > 0 0 129 0, 0.0 3,-1.6 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0 137.6 -5.2 9.6 14.3 2 3 A D G > + 0 0 106 1,-0.3 3,-1.4 2,-0.2 4,-0.4 0.736 360.0 76.4 -57.0 -21.0 -6.1 7.7 11.1 3 4 A I G > S+ 0 0 52 1,-0.3 3,-1.6 2,-0.2 -1,-0.3 0.924 89.0 55.0 -54.8 -43.6 -2.3 7.0 11.1 4 5 A a G < S+ 0 0 8 -3,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.600 104.9 53.9 -67.8 -13.4 -2.9 4.4 13.8 5 6 A K G < S+ 0 0 140 -3,-1.4 -1,-0.3 -4,-0.4 -2,-0.2 0.403 78.4 114.7-101.5 0.1 -5.5 2.6 11.6 6 7 A L S < S- 0 0 47 -3,-1.6 16,-0.1 -4,-0.4 3,-0.1 -0.390 76.1-104.0 -65.3 145.0 -3.2 2.2 8.6 7 8 A P - 0 0 97 0, 0.0 35,-0.2 0, 0.0 -1,-0.1 -0.393 42.1 -85.0 -73.0 156.9 -2.6 -1.5 7.9 8 9 A K - 0 0 85 -3,-0.1 2,-0.5 1,-0.1 35,-0.1 -0.381 47.5-165.9 -56.4 131.4 0.8 -3.2 8.8 9 10 A D - 0 0 54 33,-0.3 31,-0.3 1,-0.1 3,-0.1 -0.879 18.5-175.8-130.1 100.3 3.1 -2.6 5.8 10 11 A E - 0 0 109 -2,-0.5 25,-2.3 1,-0.2 26,-0.3 0.674 30.6-167.4 -68.1 -14.3 6.3 -4.6 5.7 11 12 A G - 0 0 33 27,-0.3 27,-0.2 23,-0.2 2,-0.2 -0.215 18.4 -87.3 62.8-151.1 7.4 -2.7 2.7 12 13 A T B S+A 37 0A 93 25,-2.4 25,-2.1 -3,-0.1 3,-0.2 -0.749 73.0 77.3-145.0-172.1 10.3 -3.9 0.6 13 14 A b S S- 0 0 47 -2,-0.2 23,-0.1 23,-0.2 24,-0.1 -0.177 75.7 -98.5 83.3 175.2 14.1 -3.6 0.3 14 15 A R S S+ 0 0 201 1,-0.1 2,-1.2 22,-0.1 22,-0.2 0.096 85.0 108.0-122.5 21.3 16.5 -5.5 2.6 15 16 A D - 0 0 133 20,-2.7 2,-0.1 -3,-0.2 -1,-0.1 -0.622 61.7-163.9 -91.4 63.7 17.5 -3.2 5.4 16 17 A F + 0 0 109 -2,-1.2 2,-0.4 17,-0.1 19,-0.2 -0.348 17.1 170.0 -59.0 130.5 15.4 -5.1 7.8 17 18 A I E -B 34 0B 77 17,-2.1 17,-2.6 -2,-0.1 2,-0.5 -0.997 35.8-116.7-143.8 135.1 14.6 -3.5 11.1 18 19 A L E +B 33 0B 77 -2,-0.4 2,-0.2 15,-0.2 15,-0.2 -0.667 44.2 169.2 -73.7 122.9 12.1 -4.6 13.8 19 20 A K E -B 32 0B 45 13,-3.0 13,-2.3 -2,-0.5 2,-0.4 -0.747 28.1-122.7-126.3 176.8 9.4 -2.0 14.2 20 21 A W E -BC 31 44B 29 24,-2.1 24,-2.2 -2,-0.2 2,-0.3 -0.945 21.4-173.3-124.8 143.0 6.0 -1.8 16.0 21 22 A Y E -B 30 0B 38 9,-2.6 9,-2.7 -2,-0.4 2,-0.5 -0.933 27.7-112.1-132.5 156.4 2.6 -1.0 14.5 22 23 A Y E -B 29 0B 20 -2,-0.3 7,-0.2 7,-0.2 3,-0.1 -0.788 21.4-155.6 -90.6 130.6 -0.8 -0.4 16.2 23 24 A D E >>> -B 28 0B 31 5,-2.8 4,-1.5 -2,-0.5 5,-1.3 -0.913 3.0-165.2-106.3 108.7 -3.4 -3.1 15.6 24 25 A P T 345S+ 0 0 50 0, 0.0 -1,-0.1 0, 0.0 -19,-0.1 0.736 85.8 61.9 -67.2 -18.5 -6.9 -1.5 16.0 25 26 A N T 345S+ 0 0 147 1,-0.2 -3,-0.0 3,-0.1 -2,-0.0 0.819 118.0 26.1 -76.0 -32.6 -8.5 -5.0 16.3 26 27 A T T <45S- 0 0 80 -3,-0.6 -1,-0.2 2,-0.3 3,-0.1 0.468 102.6-131.3-103.5 -9.2 -6.6 -6.0 19.4 27 28 A K T <5S+ 0 0 153 -4,-1.5 2,-0.3 1,-0.2 -2,-0.0 0.888 74.7 92.2 58.9 40.1 -6.1 -2.3 20.5 28 29 A S E S- 0 0 52 1,-0.1 4,-1.9 -26,-0.1 5,-0.2 -0.979 71.9-122.7-145.2 157.0 9.5 1.1 20.4 47 48 A Q H > S+ 0 0 93 -2,-0.3 4,-2.6 1,-0.2 5,-0.2 0.919 112.6 56.7 -65.6 -39.1 6.4 -0.5 21.8 48 49 A K H > S+ 0 0 157 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.897 107.9 45.3 -58.6 -44.9 6.2 2.4 24.3 49 50 A E H > S+ 0 0 91 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.923 112.6 51.3 -66.9 -42.3 6.1 5.1 21.7 50 51 A c H X S+ 0 0 0 -4,-1.9 4,-2.5 1,-0.2 5,-0.4 0.921 111.9 47.5 -59.7 -43.7 3.5 3.1 19.6 51 52 A E H X S+ 0 0 58 -4,-2.6 4,-1.7 2,-0.2 -1,-0.2 0.899 110.0 52.0 -66.6 -40.8 1.3 2.8 22.7 52 53 A K H < S+ 0 0 155 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.945 116.9 38.3 -60.0 -48.8 1.6 6.4 23.7 53 54 A V H < S+ 0 0 69 -4,-2.3 -2,-0.2 -5,-0.1 -1,-0.2 0.886 132.5 19.9 -73.5 -35.9 0.5 7.7 20.2 54 55 A a H < 0 0 17 -4,-2.5 -3,-0.2 -5,-0.2 -2,-0.2 0.713 360.0 360.0-115.3 -27.8 -2.2 5.1 19.3 55 56 A A < 0 0 84 -4,-1.7 -3,-0.1 -5,-0.4 -2,-0.1 0.848 360.0 360.0 -66.7 360.0 -3.6 3.3 22.4