==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-APR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 11-AUG-09 2KN1 . COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH,H.CU . 50 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4375.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 26 52.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 18.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A L 0 0 206 0, 0.0 2,-0.5 0, 0.0 17,-0.0 0.000 360.0 360.0 360.0 86.8 -7.6 -8.0 16.8 2 2 A Q - 0 0 115 1,-0.1 3,-0.1 0, 0.0 0, 0.0 -0.940 360.0 -2.6-114.7 129.0 -7.5 -10.1 13.6 3 3 A M S > S+ 0 0 106 -2,-0.5 2,-3.0 1,-0.2 3,-0.9 0.426 82.4 149.1 75.8 -2.1 -4.3 -10.6 11.5 4 4 A A T 3 + 0 0 63 1,-0.3 -1,-0.2 2,-0.0 3,-0.0 -0.348 69.5 34.8 -64.9 73.1 -2.5 -8.4 14.0 5 5 A G T 3 S+ 0 0 66 -2,-3.0 -1,-0.3 -3,-0.1 -2,-0.1 0.465 110.7 52.4 146.4 39.9 0.8 -10.2 13.6 6 6 A Q < + 0 0 147 -3,-0.9 2,-0.4 2,-0.1 14,-0.1 -0.040 60.0 157.2 168.5 72.7 1.1 -11.4 10.0 7 7 A a - 0 0 51 4,-0.1 3,-0.2 1,-0.1 4,-0.1 -0.873 45.3-102.5-112.2 144.2 0.7 -8.8 7.2 8 8 A S > - 0 0 68 -2,-0.4 3,-2.4 12,-0.2 -1,-0.1 -0.151 62.4 -69.2 -57.7 156.2 2.0 -8.9 3.7 9 9 A Q T 3 S- 0 0 169 1,-0.3 -1,-0.2 13,-0.0 3,-0.1 -0.269 122.3 -1.0 -53.9 125.0 5.1 -6.7 3.0 10 10 A N T 3 S+ 0 0 59 1,-0.2 13,-0.8 -3,-0.2 -1,-0.3 0.786 97.4 156.2 62.8 30.2 4.1 -3.1 3.2 11 11 A E E < -A 22 0A 42 -3,-2.4 2,-0.5 11,-0.2 -1,-0.2 -0.639 33.4-144.7 -87.9 144.5 0.5 -4.1 3.9 12 12 A Y E -A 21 0A 46 9,-4.3 9,-4.0 -2,-0.3 2,-1.4 -0.941 6.4-140.7-117.5 121.4 -1.8 -1.7 5.7 13 13 A F E -A 20 0A 79 -2,-0.5 2,-1.0 7,-0.3 7,-0.3 -0.604 18.0-149.3 -78.0 91.6 -4.5 -2.9 8.1 14 14 A D >> - 0 0 50 5,-1.7 4,-4.0 -2,-1.4 3,-2.2 -0.474 0.8-155.4 -65.1 100.5 -7.4 -0.6 7.3 15 15 A S T 34 S+ 0 0 93 -2,-1.0 -1,-0.2 1,-0.3 5,-0.0 0.752 97.7 53.4 -49.5 -23.4 -9.0 -0.3 10.7 16 16 A L T 34 S+ 0 0 134 1,-0.1 -1,-0.3 3,-0.1 -2,-0.1 0.757 119.4 31.9 -82.6 -26.8 -12.2 0.4 8.7 17 17 A L T <4 S- 0 0 94 -3,-2.2 -2,-0.2 2,-0.1 -1,-0.1 0.649 96.4-137.6-101.2 -23.4 -11.8 -2.7 6.6 18 18 A H < + 0 0 104 -4,-4.0 2,-0.3 1,-0.2 -3,-0.2 0.961 69.8 98.2 61.9 51.4 -10.2 -4.9 9.3 19 19 A A S S- 0 0 36 -5,-0.4 -5,-1.7 -7,-0.1 2,-0.7 -0.838 80.9-113.1-169.2 129.5 -7.7 -6.3 6.8 20 20 A a E -A 13 0A 15 -7,-0.3 -7,-0.3 -2,-0.3 -12,-0.2 -0.538 42.3-167.3 -69.2 109.7 -4.1 -5.6 5.8 21 21 A I E -A 12 0A 25 -9,-4.0 -9,-4.3 -2,-0.7 2,-0.2 -0.767 19.6-113.2-101.2 145.8 -4.4 -4.2 2.4 22 22 A P E > -A 11 0A 48 0, 0.0 3,-1.1 0, 0.0 4,-0.3 -0.498 19.5-122.9 -79.9 147.8 -1.5 -3.7 -0.0 23 23 A b T >> S+ 0 0 3 -13,-0.8 3,-3.6 1,-0.2 4,-1.3 0.866 105.0 74.7 -53.7 -40.8 -0.4 -0.2 -1.1 24 24 A Q H >> S+ 0 0 74 1,-0.3 4,-1.7 2,-0.2 3,-0.8 0.855 86.0 62.6 -39.3 -48.6 -0.9 -1.1 -4.8 25 25 A L H <4 S+ 0 0 116 -3,-1.1 -1,-0.3 1,-0.3 -2,-0.2 0.722 119.8 25.7 -53.5 -23.3 -4.7 -0.9 -4.2 26 26 A R H <4 S+ 0 0 97 -3,-3.6 5,-0.3 -4,-0.3 -1,-0.3 0.367 110.8 72.7-121.4 -0.7 -4.1 2.8 -3.5 27 27 A c H << S+ 0 0 14 -4,-1.3 4,-0.2 -3,-0.8 -3,-0.2 0.912 96.5 47.1 -80.1 -48.2 -0.9 3.4 -5.4 28 28 A S S < S+ 0 0 96 -4,-1.7 2,-0.3 -5,-0.1 -1,-0.2 0.406 127.5 15.0 -76.2 3.0 -2.3 3.4 -8.9 29 29 A S S S+ 0 0 68 -5,-0.2 -1,-0.1 -3,-0.1 0, 0.0 -0.936 117.5 25.2-173.7 150.3 -5.1 5.7 -7.8 30 30 A N S S- 0 0 110 -2,-0.3 -3,-0.1 1,-0.2 -2,-0.1 0.227 80.9-135.1 76.3 -14.9 -6.3 8.1 -5.1 31 31 A T + 0 0 100 -5,-0.3 -1,-0.2 -4,-0.2 -4,-0.1 0.791 57.9 140.8 30.3 53.4 -2.5 8.5 -4.3 32 32 A P + 0 0 45 0, 0.0 2,-1.6 0, 0.0 3,-0.2 -0.030 14.1 133.1-108.2 28.5 -3.2 8.2 -0.5 33 33 A P > + 0 0 6 0, 0.0 4,-1.3 0, 0.0 7,-0.1 -0.577 13.6 155.6 -84.1 83.5 -0.1 6.1 0.5 34 34 A L T 4 S+ 0 0 163 -2,-1.6 3,-0.2 2,-0.2 4,-0.2 0.967 86.4 27.7 -71.4 -50.6 1.2 8.0 3.6 35 35 A T T 4 S+ 0 0 114 -3,-0.2 -1,-0.2 1,-0.2 4,-0.1 0.397 131.2 45.2 -88.2 3.3 2.9 4.9 5.0 36 36 A b T >> S+ 0 0 4 2,-0.1 4,-4.1 3,-0.1 3,-0.6 0.405 74.9 105.9-121.6 -5.1 3.3 3.6 1.4 37 37 A Q H 3X S+ 0 0 98 -4,-1.3 4,-1.0 1,-0.3 -3,-0.1 0.791 88.7 47.1 -46.7 -29.6 4.5 6.9 -0.3 38 38 A R H 34 S+ 0 0 199 -4,-0.2 4,-0.3 2,-0.2 -1,-0.3 0.852 116.7 42.1 -80.5 -37.7 7.9 5.2 -0.4 39 39 A Y H X4 S+ 0 0 58 -3,-0.6 3,-0.6 2,-0.2 -2,-0.2 0.877 109.6 56.6 -76.9 -40.6 6.5 1.9 -1.6 40 40 A c H >X S+ 0 0 16 -4,-4.1 4,-1.7 1,-0.3 3,-1.5 0.915 108.8 47.2 -58.6 -42.7 4.1 3.4 -4.2 41 41 A N T 3< S+ 0 0 108 -4,-1.0 -1,-0.3 -5,-0.4 5,-0.2 0.674 117.1 45.4 -72.1 -14.9 7.0 5.2 -5.8 42 42 A A T <4 S+ 0 0 59 -3,-0.6 -1,-0.3 -4,-0.3 -2,-0.2 -0.019 114.3 48.9-115.0 26.5 8.9 1.9 -5.7 43 43 A S T <4 S+ 0 0 41 -3,-1.5 -2,-0.2 -20,-0.0 -3,-0.2 0.486 119.0 29.5-134.6 -24.5 6.0 -0.1 -7.0 44 44 A V S < S- 0 0 62 -4,-1.7 -2,-0.1 -5,-0.2 -4,-0.1 -0.357 83.7-155.3-139.1 55.3 4.8 1.8 -10.0 45 45 A T + 0 0 118 1,-0.1 2,-0.3 5,-0.0 -3,-0.1 0.197 26.9 151.6 -29.4 146.3 7.9 3.5 -11.4 46 46 A N + 0 0 112 -5,-0.2 4,-0.1 1,-0.2 -1,-0.1 -0.977 21.5 57.2-170.8 173.0 7.3 6.6 -13.5 47 47 A S S S+ 0 0 94 -2,-0.3 -1,-0.2 3,-0.0 0, 0.0 0.426 84.9 47.5 67.8 146.7 8.7 10.0 -14.6 48 48 A V S S- 0 0 136 2,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.954 120.0 -16.0 50.7 93.8 12.0 10.4 -16.4 49 49 A K 0 0 197 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.339 360.0 360.0 65.1 158.3 12.1 7.9 -19.2 50 50 A X 0 0 251 -4,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.783 360.0 360.0-146.9 360.0 9.8 4.9 -19.5