==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 14-AUG-09 2KN5 . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.D.FRIEDLAND . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5414.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 114 0, 0.0 16,-1.6 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 142.0 26.3 25.4 2.8 2 2 A Q E +A 16 0A 122 14,-0.2 62,-0.7 12,-0.0 2,-0.3 -0.592 360.0 179.0 -84.4 140.2 26.9 29.0 3.8 3 3 A I E -A 15 0A 6 12,-1.2 12,-1.8 -2,-0.3 2,-0.4 -0.947 19.3-134.7-133.6 159.6 26.2 30.1 7.4 4 4 A F E -Ab 14 66A 71 61,-1.3 63,-2.6 -2,-0.3 2,-0.6 -0.964 7.9-160.6-117.2 135.7 26.6 33.5 9.1 5 5 A V E -Ab 13 67A 0 8,-1.2 2,-0.5 -2,-0.4 8,-0.5 -0.960 10.3-158.2-114.9 108.3 28.1 34.1 12.6 6 6 A K E -Ab 12 68A 73 61,-2.6 63,-1.7 -2,-0.6 6,-0.2 -0.757 6.4-156.3 -88.2 122.9 27.2 37.5 14.1 7 7 A T - 0 0 17 4,-1.8 63,-0.1 -2,-0.5 -1,-0.1 -0.017 28.6-106.7 -79.0-162.5 29.6 38.8 16.8 8 8 A L S S+ 0 0 125 1,-0.1 -1,-0.1 60,-0.1 -2,-0.0 0.310 109.5 56.4-112.6 6.6 28.4 41.3 19.4 9 9 A T S S- 0 0 113 2,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.654 124.7 -84.8-106.7 -27.8 30.1 44.5 18.2 10 10 A G S S+ 0 0 70 1,-0.3 2,-0.1 0, 0.0 -2,-0.1 0.414 83.3 131.1 139.2 0.7 28.7 44.5 14.7 11 11 A K - 0 0 112 -5,-0.0 -4,-1.8 2,-0.0 2,-0.3 -0.503 40.4-149.9 -73.9 152.3 30.9 42.3 12.7 12 12 A T E -A 6 0A 90 -6,-0.2 2,-0.4 -2,-0.1 -6,-0.2 -0.909 4.9-149.9-121.3 156.7 29.6 39.5 10.4 13 13 A I E -A 5 0A 7 -8,-0.5 -8,-1.2 -2,-0.3 2,-0.5 -0.961 1.9-153.9-128.0 142.1 31.2 36.2 9.5 14 14 A T E -A 4 0A 75 -2,-0.4 2,-0.4 -10,-0.2 -10,-0.2 -0.927 18.4-169.0-111.9 134.3 31.0 34.1 6.3 15 15 A L E -A 3 0A 1 -12,-1.8 -12,-1.2 -2,-0.5 2,-1.0 -0.976 22.6-149.5-127.2 134.1 31.6 30.4 6.6 16 16 A E E +A 2 0A 172 -2,-0.4 2,-0.2 -14,-0.2 -14,-0.2 -0.836 48.5 139.5 -99.6 96.2 32.1 27.5 4.1 17 17 A V - 0 0 16 -16,-1.6 -2,-0.0 -2,-1.0 0, 0.0 -0.621 39.5-147.5-121.9-175.0 30.8 24.5 5.9 18 18 A E > - 0 0 102 -2,-0.2 3,-1.9 -16,-0.0 38,-0.2 -0.966 36.8-107.5-151.9 154.7 28.7 21.3 5.6 19 19 A P T 3 S+ 0 0 75 0, 0.0 38,-0.6 0, 0.0 37,-0.3 0.738 112.1 73.8 -54.9 -24.5 26.4 19.4 8.0 20 20 A S T 3 S+ 0 0 73 36,-0.1 2,-0.1 35,-0.1 -3,-0.0 0.773 79.6 91.0 -63.8 -30.9 29.2 16.8 8.3 21 21 A D S < S- 0 0 36 -3,-1.9 35,-2.0 34,-0.1 36,-0.2 -0.421 70.1-136.7 -69.6 149.6 31.3 19.1 10.5 22 22 A T B > -E 55 0B 35 33,-0.2 4,-2.0 -2,-0.1 33,-0.3 -0.463 31.2 -99.6 -93.6 169.6 31.1 19.1 14.2 23 23 A I H > S+ 0 0 4 31,-2.7 4,-0.8 28,-0.5 29,-0.2 0.716 121.6 58.2 -59.0 -25.6 30.9 22.1 16.6 24 24 A E H > S+ 0 0 114 28,-0.6 4,-0.5 30,-0.4 -1,-0.2 0.920 107.0 41.9 -70.9 -46.4 34.7 21.5 17.2 25 25 A N H >> S+ 0 0 75 2,-0.2 4,-1.5 -3,-0.2 3,-0.9 0.921 111.9 54.5 -66.6 -50.3 35.9 21.8 13.6 26 26 A V H 3X S+ 0 0 7 -4,-2.0 4,-1.9 1,-0.3 -1,-0.2 0.816 108.4 49.8 -54.4 -31.4 33.8 24.8 12.8 27 27 A K H 3< S+ 0 0 4 -4,-0.8 4,-0.4 1,-0.2 -1,-0.3 0.686 111.1 51.5 -81.6 -20.0 35.2 26.5 15.8 28 28 A A H << S+ 0 0 45 -3,-0.9 4,-0.4 -4,-0.5 -2,-0.3 0.606 110.1 47.1 -89.3 -15.0 38.6 25.5 14.4 29 29 A K H >X S+ 0 0 104 -4,-1.5 4,-0.9 2,-0.1 3,-0.6 0.817 103.4 62.9 -90.1 -35.2 37.9 27.0 10.9 30 30 A I H 3X>S+ 0 0 0 -4,-1.9 4,-2.0 1,-0.3 5,-0.6 0.792 87.6 70.3 -60.4 -29.4 36.6 30.3 12.4 31 31 A Q H 345S+ 0 0 92 -4,-0.4 -1,-0.3 1,-0.3 -2,-0.1 0.981 96.9 54.9 -49.9 -51.9 40.0 31.0 13.9 32 32 A D H <45S+ 0 0 119 -3,-0.6 -1,-0.3 -4,-0.4 -2,-0.2 0.881 106.6 50.6 -47.0 -41.4 41.0 31.6 10.3 33 33 A K H <5S- 0 0 76 -4,-0.9 -1,-0.2 -3,-0.3 -2,-0.2 0.968 137.3 -6.1 -73.7 -41.8 38.2 34.1 9.8 34 34 A E T <5S- 0 0 68 -4,-2.0 -3,-0.2 2,-0.1 -2,-0.1 0.788 90.9-114.8-114.0 -62.8 38.8 36.4 12.8 35 35 A G < + 0 0 38 -5,-0.6 -4,-0.2 1,-0.3 -3,-0.1 0.144 58.7 142.0 144.8 -16.7 41.5 34.9 14.9 36 36 A I - 0 0 54 -6,-0.2 -1,-0.3 -5,-0.1 -2,-0.1 -0.295 56.1-112.7 -58.1 128.9 40.0 34.0 18.2 37 37 A P > - 0 0 38 0, 0.0 3,-1.3 0, 0.0 4,-0.3 -0.329 21.2-126.1 -57.0 137.0 41.2 30.7 19.8 38 38 A P G > S+ 0 0 37 0, 0.0 3,-1.6 0, 0.0 -10,-0.1 0.821 109.0 62.2 -57.2 -32.1 38.5 28.1 19.8 39 39 A D G 3 S+ 0 0 99 1,-0.3 -3,-0.0 -12,-0.0 33,-0.0 0.870 105.8 47.6 -66.3 -26.9 39.0 27.5 23.6 40 40 A Q G < S+ 0 0 43 -3,-1.3 32,-2.1 31,-0.1 2,-0.4 0.469 98.3 92.2 -92.0 3.5 37.9 31.2 24.0 41 41 A Q E < +C 71 0A 0 -3,-1.6 2,-0.3 -4,-0.3 30,-0.2 -0.784 47.7 177.8-101.5 140.5 34.9 30.8 21.8 42 42 A R E -C 70 0A 101 28,-1.7 28,-2.2 -2,-0.4 2,-0.4 -0.961 13.7-152.4-134.9 148.7 31.3 29.9 22.8 43 43 A L E +C 69 0A 6 -2,-0.3 7,-2.7 7,-0.3 2,-0.4 -0.999 15.3 178.7-129.8 125.1 28.2 29.6 20.6 44 44 A I E +CD 68 49A 56 24,-1.5 24,-0.5 -2,-0.4 2,-0.4 -0.995 10.6 172.6-131.6 133.7 24.7 30.2 21.8 45 45 A F E > S- D 0 48A 102 3,-1.3 3,-1.3 -2,-0.4 22,-0.0 -0.955 78.8 -14.5-143.6 110.9 21.3 30.1 20.0 46 46 A A T 3 S- 0 0 95 -2,-0.4 3,-0.1 1,-0.3 -1,-0.0 0.768 127.2 -53.9 69.0 30.8 18.1 30.4 22.0 47 47 A G T 3 S+ 0 0 62 1,-0.2 2,-0.5 0, 0.0 -1,-0.3 0.157 105.6 125.8 88.9 -7.5 19.8 29.7 25.3 48 48 A K E < -D 45 0A 130 -3,-1.3 -3,-1.3 1,-0.0 2,-0.8 -0.682 54.9-142.4 -80.4 119.5 21.5 26.4 24.2 49 49 A Q E -D 44 0A 136 -2,-0.5 -5,-0.2 -5,-0.2 -1,-0.0 -0.752 27.2-127.8 -81.6 106.2 25.2 26.4 24.8 50 50 A L - 0 0 17 -7,-2.7 2,-0.4 -2,-0.8 -7,-0.3 -0.200 19.8-137.0 -54.1 154.2 26.6 24.5 21.8 51 51 A E > - 0 0 103 -9,-0.1 3,-2.5 1,-0.1 -28,-0.5 -0.941 12.3-134.0-126.5 132.4 29.0 21.5 22.3 52 52 A D T 3 S+ 0 0 64 -2,-0.4 -28,-0.6 1,-0.3 -27,-0.1 0.375 106.4 55.2 -56.3 -5.0 32.2 20.5 20.6 53 53 A G T 3 S+ 0 0 64 -30,-0.1 -1,-0.3 -29,-0.1 2,-0.3 0.164 91.0 98.2-114.2 9.3 31.1 16.8 20.3 54 54 A R < - 0 0 94 -3,-2.5 -31,-2.7 3,-0.0 -30,-0.4 -0.698 66.5-136.3 -97.2 156.8 27.9 17.8 18.5 55 55 A T B >> -E 22 0B 45 -2,-0.3 3,-3.1 -33,-0.3 4,-0.7 -0.858 30.1-108.9-109.6 144.4 27.3 17.7 14.7 56 56 A L G >4>S+ 0 0 12 -35,-2.0 5,-1.3 -2,-0.4 3,-0.7 0.760 119.6 65.6 -41.0 -25.5 25.5 20.5 12.7 57 57 A S G >45S+ 0 0 68 -38,-0.6 3,-0.9 1,-0.2 -1,-0.3 0.810 88.4 61.2 -74.0 -27.4 22.8 17.9 12.5 58 58 A D G <45S+ 0 0 96 -3,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.690 116.3 34.8 -65.9 -26.9 22.0 17.7 16.2 59 59 A Y G <<5S- 0 0 54 -4,-0.7 -1,-0.3 -3,-0.7 -2,-0.2 0.282 98.9-135.0-107.9 6.0 21.1 21.4 15.9 60 60 A N T < 5 - 0 0 133 -3,-0.9 2,-0.3 -5,-0.2 -3,-0.2 0.776 29.5-172.2 41.4 29.4 19.6 21.3 12.4 61 61 A I < - 0 0 27 -5,-1.3 -1,-0.2 -42,-0.1 2,-0.1 -0.415 18.5-180.0 -51.4 107.1 21.6 24.5 11.8 62 62 A Q > - 0 0 137 -2,-0.3 3,-1.0 -3,-0.2 2,-0.1 -0.247 29.3 -47.3-107.0-169.0 20.0 25.2 8.3 63 63 A K T 3 S+ 0 0 140 1,-0.2 -1,-0.2 -2,-0.1 -60,-0.1 -0.401 117.4 5.4 -73.3 136.1 20.3 27.8 5.6 64 64 A E T 3 S+ 0 0 149 -62,-0.7 -1,-0.2 1,-0.3 2,-0.2 0.398 88.7 139.0 71.9 8.9 20.3 31.5 6.4 65 65 A S < - 0 0 31 -3,-1.0 -61,-1.3 1,-0.0 2,-0.4 -0.483 46.3-140.0 -74.8 142.3 20.3 30.9 10.1 66 66 A T E -b 4 0A 48 -2,-0.2 2,-0.3 -63,-0.1 -61,-0.2 -0.920 11.2-153.3-106.4 133.8 22.6 33.3 12.0 67 67 A L E -b 5 0A 10 -63,-2.6 -61,-2.6 -2,-0.4 2,-0.5 -0.706 13.4-128.2 -98.5 162.2 24.7 32.0 14.9 68 68 A H E -bC 6 44A 85 -24,-0.5 -24,-1.5 -2,-0.3 2,-0.2 -0.960 15.8-145.9-116.0 121.9 25.9 34.2 17.8 69 69 A L E - C 0 43A 17 -63,-1.7 2,-0.4 -2,-0.5 -26,-0.2 -0.542 11.6-161.6 -79.8 140.4 29.5 34.3 18.8 70 70 A V E - C 0 42A 32 -28,-2.2 -28,-1.7 -2,-0.2 2,-0.7 -0.989 9.8-144.5-123.7 139.0 30.6 34.8 22.5 71 71 A L E - C 0 41A 89 -2,-0.4 2,-0.8 -30,-0.2 -30,-0.2 -0.860 16.2-179.9-103.9 107.8 34.0 35.9 23.9 72 72 A R - 0 0 160 -32,-2.1 -2,-0.0 -2,-0.7 -31,-0.0 -0.721 17.7-153.8-101.5 79.9 35.0 34.3 27.1 73 73 A L - 0 0 116 -2,-0.8 2,-0.8 1,-0.1 -2,-0.0 -0.105 15.5-129.7 -58.0 148.2 38.4 35.7 28.1 74 74 A R S S+ 0 0 216 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.465 83.4 9.8 -95.3 55.0 40.9 33.7 30.3 75 75 A G 0 0 64 -2,-0.8 -2,-0.0 1,-0.1 0, 0.0 -0.899 360.0 360.0 164.2-170.9 41.6 36.4 32.9 76 76 A G 0 0 133 -2,-0.3 -1,-0.1 0, 0.0 -3,-0.0 0.656 360.0 360.0 115.3 360.0 40.4 39.8 33.9