==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING, DNA BINDING PROTEIN 18-AUG-09 2KN8 . COMPND 2 MOLECULE: DNA CLEAVAGE AND PACKAGING PROTEIN LARGE SUBUNIT, . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.COUVREUX,S.HANTZ,R.MARQUANT,G.CHAMPIER,S.ALAIN,N.MORELLET, . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7746.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 69.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 55.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 175 0, 0.0 2,-0.3 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0 -48.2 43.3 -4.3 2.8 2 2 A Q - 0 0 148 2,-0.4 4,-0.0 1,-0.1 0, 0.0 -0.978 360.0-108.0-142.6 156.1 42.8 -1.4 0.5 3 3 A N S S+ 0 0 173 -2,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.731 107.9 58.7 -56.8 -16.4 44.6 1.9 -0.4 4 4 A H S S- 0 0 115 1,-0.1 -2,-0.4 0, 0.0 3,-0.1 -0.754 88.4-124.0-112.0 161.4 41.7 3.5 1.4 5 5 A I - 0 0 150 -2,-0.3 -2,-0.1 1,-0.1 -1,-0.1 0.355 50.7-134.6 -84.5 10.0 40.6 3.1 5.1 6 6 A E - 0 0 110 1,-0.1 -1,-0.1 2,-0.1 -4,-0.0 0.177 10.0-137.5 57.4 171.6 37.1 2.2 3.8 7 7 A Q > + 0 0 102 -3,-0.1 4,-0.8 2,-0.0 -1,-0.1 -0.328 33.1 161.4-166.8 75.1 34.0 3.8 5.4 8 8 A P H > S+ 0 0 101 0, 0.0 4,-0.9 0, 0.0 -2,-0.1 0.658 85.4 49.9 -73.0 -15.9 31.0 1.5 6.0 9 9 A F H > S+ 0 0 169 2,-0.2 4,-0.8 1,-0.1 -2,-0.0 0.737 98.1 65.0 -94.4 -24.9 29.7 4.0 8.5 10 10 A Y H > S+ 0 0 132 1,-0.2 4,-0.8 2,-0.2 -1,-0.1 0.813 105.0 47.3 -68.0 -26.3 30.0 7.1 6.2 11 11 A L H >X S+ 0 0 70 -4,-0.8 4,-2.4 2,-0.2 3,-1.1 0.949 98.2 64.3 -80.1 -51.5 27.3 5.5 3.9 12 12 A M H 3< S+ 0 0 141 -4,-0.9 4,-0.3 1,-0.3 -1,-0.2 0.800 103.8 54.0 -43.0 -26.6 24.7 4.5 6.5 13 13 A G H 3< S+ 0 0 52 -4,-0.8 -1,-0.3 1,-0.2 3,-0.2 0.905 122.4 25.1 -78.1 -40.7 24.5 8.3 7.1 14 14 A R H << S+ 0 0 176 -3,-1.1 4,-0.3 -4,-0.8 -2,-0.2 0.322 108.4 78.1-104.1 8.2 23.8 9.1 3.4 15 15 A D X + 0 0 52 -4,-2.4 4,-2.7 2,-0.1 5,-0.3 0.598 67.2 95.7 -91.1 -10.4 22.3 5.7 2.6 16 16 A K H >> S+ 0 0 153 -5,-0.3 3,-3.2 -4,-0.3 4,-1.0 0.910 93.2 30.2 -42.5 -89.2 19.0 6.5 4.2 17 17 A A H >> S+ 0 0 79 1,-0.3 4,-1.1 2,-0.2 3,-0.6 0.827 120.5 59.2 -43.3 -30.1 17.0 7.7 1.1 18 18 A L H 3> S+ 0 0 89 -4,-0.3 4,-0.6 1,-0.2 -1,-0.3 0.821 97.9 57.5 -71.6 -27.5 19.2 5.2 -0.8 19 19 A A H < S+ 0 0 91 -4,-1.2 3,-3.2 1,-0.3 4,-0.5 0.911 95.4 29.5 -42.8 -89.5 9.5 -4.6 -8.3 29 29 A S T >> S+ 0 0 90 -4,-0.4 3,-1.4 1,-0.3 4,-0.6 0.799 116.7 66.1 -44.9 -25.3 9.4 -7.9 -10.2 30 30 A G H >> S+ 0 0 27 -4,-0.3 4,-1.3 1,-0.3 3,-1.0 0.860 84.8 69.1 -68.2 -31.1 8.1 -9.2 -6.9 31 31 A Y H > S+ 0 0 158 -4,-0.4 3,-1.3 1,-0.2 4,-1.0 0.960 110.9 51.1 -65.1 -48.0 -2.7 -12.5 -7.3 37 37 A E H 3> S+ 0 0 119 -4,-0.4 4,-1.1 1,-0.3 -1,-0.2 0.800 102.0 64.2 -60.3 -24.5 -2.3 -12.3 -3.5 38 38 A L H 3X S+ 0 0 82 -4,-2.6 4,-0.9 1,-0.2 -1,-0.3 0.836 98.4 53.3 -69.7 -29.2 -3.4 -8.6 -3.8 39 39 A V H < S+ 0 0 50 -4,-0.9 3,-2.8 1,-0.2 -2,-0.2 0.776 92.8 76.0 -87.7 -26.8 -9.1 -6.9 -1.1 43 43 A I T 3< S+ 0 0 83 -4,-1.2 -1,-0.2 1,-0.3 4,-0.2 0.840 104.2 40.0 -53.6 -29.7 -11.9 -9.6 -1.1 44 44 A K T 3 S+ 0 0 172 -4,-0.4 -1,-0.3 -3,-0.2 2,-0.3 0.100 117.7 54.9-106.4 23.3 -12.2 -8.9 2.6 45 45 A L S < S- 0 0 96 -3,-2.8 -1,-0.2 0, 0.0 -4,-0.0 -0.860 122.6 -14.2-157.2 118.2 -11.8 -5.2 2.4 46 46 A S S S+ 0 0 105 -2,-0.3 -2,-0.1 1,-0.1 -3,-0.1 0.898 92.9 122.4 58.0 38.3 -13.8 -2.6 0.3 47 47 A H + 0 0 97 -4,-0.2 3,-0.2 1,-0.2 -1,-0.1 0.144 52.2 74.5-115.5 19.3 -15.2 -5.5 -1.8 48 48 A D > + 0 0 60 1,-0.1 4,-1.1 2,-0.1 -1,-0.2 -0.277 49.0 128.8-126.1 48.9 -18.9 -4.7 -1.1 49 49 A P H > S+ 0 0 77 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.842 73.3 53.8 -71.8 -35.2 -19.4 -1.7 -3.3 50 50 A I H > S+ 0 0 135 1,-0.2 4,-1.2 2,-0.2 5,-0.2 0.929 113.2 41.6 -67.8 -42.6 -22.5 -3.2 -5.0 51 51 A E H > S+ 0 0 121 1,-0.2 4,-0.6 2,-0.2 -1,-0.2 0.750 118.8 47.5 -76.6 -21.0 -24.2 -3.8 -1.6 52 52 A Y H X S+ 0 0 153 -4,-1.1 4,-1.5 2,-0.2 -2,-0.2 0.747 103.6 61.0 -90.3 -24.7 -23.1 -0.5 -0.3 53 53 A L H X S+ 0 0 122 -4,-2.1 4,-1.1 2,-0.2 5,-0.2 0.945 108.1 42.5 -68.1 -45.1 -24.1 1.5 -3.4 54 54 A L H X S+ 0 0 101 -4,-1.2 4,-1.5 1,-0.2 -1,-0.2 0.828 114.4 52.5 -71.0 -28.1 -27.8 0.6 -3.0 55 55 A E H X S+ 0 0 122 -4,-0.6 4,-1.2 1,-0.2 -1,-0.2 0.781 105.3 55.1 -78.2 -24.4 -27.6 1.2 0.8 56 56 A Q H X S+ 0 0 126 -4,-1.5 4,-0.9 2,-0.2 -1,-0.2 0.791 112.6 41.9 -78.6 -25.7 -26.1 4.7 0.2 57 57 A I H X S+ 0 0 112 -4,-1.1 4,-0.9 2,-0.2 -2,-0.2 0.787 114.6 49.8 -90.1 -29.0 -29.0 5.7 -2.0 58 58 A Q H X S+ 0 0 117 -4,-1.5 4,-0.7 -5,-0.2 -2,-0.2 0.781 113.4 46.9 -79.6 -24.9 -31.7 4.1 0.2 59 59 A N H X S+ 0 0 97 -4,-1.2 4,-2.5 2,-0.2 5,-0.2 0.832 104.8 58.9 -84.9 -32.8 -30.3 5.8 3.4 60 60 A L H X S+ 0 0 109 -4,-0.9 4,-0.5 1,-0.2 -2,-0.2 0.846 107.5 48.0 -65.5 -30.1 -30.0 9.3 1.8 61 61 A H H < S+ 0 0 156 -4,-0.9 -1,-0.2 1,-0.2 -2,-0.2 0.794 116.6 42.2 -80.8 -26.7 -33.7 9.3 1.1 62 62 A R H >< S+ 0 0 187 -4,-0.7 3,-0.9 1,-0.2 4,-0.5 0.754 109.0 57.7 -89.9 -25.3 -34.6 8.1 4.7 63 63 A V H 3< S+ 0 0 91 -4,-2.5 3,-0.3 1,-0.2 -2,-0.2 0.695 92.9 69.9 -78.0 -15.8 -32.0 10.4 6.4 64 64 A T T 3< S+ 0 0 113 -4,-0.5 -1,-0.2 -5,-0.2 -2,-0.1 0.639 93.4 58.3 -76.1 -10.4 -33.7 13.5 4.8 65 65 A L S < S- 0 0 119 -3,-0.9 -1,-0.2 -4,-0.1 -2,-0.2 0.757 86.2-161.0 -89.4 -25.2 -36.7 12.9 7.0 66 66 A A + 0 0 88 -4,-0.5 -3,-0.1 -3,-0.3 -2,-0.1 0.897 27.2 156.0 43.0 93.4 -34.7 13.2 10.3 67 67 A E 0 0 141 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 -0.041 360.0 360.0-137.8 34.6 -37.1 11.5 12.8 68 68 A G 0 0 149 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.898 360.0 360.0-103.8 360.0 -34.8 10.3 15.6