==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PHOTOSYNTHESIS 21-AUG-09 2KND . COMPND 2 MOLECULE: PHOTOSYSTEM II 11 KDA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; . AUTHOR K.U.CORMANN,M.M.NOWACZYK,J.-A.BANGERT,M.IKEUCHI,M.ROEGNER,R. . 110 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7615.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 82 74.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 7 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A C 0 0 163 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -60.6 79.7 12.1 13.9 2 2 A D + 0 0 92 42,-0.0 45,-0.0 0, 0.0 0, 0.0 -0.013 360.0 174.9-162.3 39.6 77.3 9.2 14.2 3 3 A S + 0 0 82 47,-0.0 45,-0.1 2,-0.0 2,-0.1 -0.286 48.6 52.0 -56.1 133.0 79.3 6.2 15.5 4 4 A G + 0 0 30 43,-0.6 2,-0.2 47,-0.0 48,-0.2 -0.107 50.8 149.1 114.7 146.7 77.0 3.3 16.2 5 5 A T - 0 0 60 43,-0.2 40,-0.0 46,-0.1 -2,-0.0 -0.772 54.1 -88.3-171.1-143.0 74.4 1.4 14.2 6 6 A G + 0 0 61 -2,-0.2 46,-0.0 47,-0.0 42,-0.0 0.276 59.8 151.3-137.6 3.8 72.9 -2.1 13.8 7 7 A L - 0 0 41 1,-0.1 -2,-0.1 38,-0.1 38,-0.0 0.101 25.8-169.9 -36.6 153.5 75.3 -3.7 11.3 8 8 A T - 0 0 66 45,-0.1 -1,-0.1 3,-0.0 6,-0.1 0.319 23.5-139.8-132.1 0.6 75.6 -7.5 11.6 9 9 A G - 0 0 1 5,-0.1 6,-0.1 4,-0.0 -2,-0.0 0.869 24.1-169.8 35.1 56.4 78.5 -8.1 9.2 10 10 A N - 0 0 90 1,-0.1 2,-0.2 2,-0.1 -1,-0.0 0.896 38.5 -91.7 -35.6 -79.2 76.8 -11.2 8.0 11 11 A Y S >> S- 0 0 151 45,-0.0 4,-1.8 46,-0.0 3,-0.7 -0.689 78.6 -14.2-168.4-136.9 79.7 -12.6 6.0 12 12 A S H 3> S+ 0 0 52 1,-0.3 4,-2.4 2,-0.2 5,-0.4 0.909 129.9 59.1 -53.3 -44.4 81.1 -12.5 2.5 13 13 A Q H 3> S+ 0 0 106 1,-0.3 4,-1.6 2,-0.2 -1,-0.3 0.878 108.5 44.9 -52.7 -40.0 77.8 -11.1 1.2 14 14 A D H <> S+ 0 0 19 -3,-0.7 4,-2.0 2,-0.2 -1,-0.3 0.803 108.1 59.2 -74.3 -30.0 78.4 -8.2 3.7 15 15 A T H X S+ 0 0 13 -4,-1.8 4,-1.8 -3,-0.2 -2,-0.2 0.939 112.8 36.1 -65.0 -47.9 82.0 -7.9 2.6 16 16 A L H X S+ 0 0 59 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.820 112.1 62.1 -74.8 -30.4 81.2 -7.2 -1.1 17 17 A T H X S+ 0 0 69 -4,-1.6 4,-1.0 -5,-0.4 -2,-0.2 0.924 108.0 42.6 -60.1 -45.2 78.2 -5.2 -0.1 18 18 A V H >X S+ 0 0 6 -4,-2.0 3,-1.0 1,-0.2 4,-1.0 0.972 119.7 40.9 -66.0 -55.2 80.3 -2.7 1.7 19 19 A I H 3X S+ 0 0 3 -4,-1.8 4,-4.0 1,-0.3 5,-0.4 0.798 103.9 71.0 -63.4 -27.7 83.0 -2.5 -0.9 20 20 A A H 3X S+ 0 0 32 -4,-2.6 4,-1.5 1,-0.3 -1,-0.3 0.875 98.4 47.7 -57.4 -36.1 80.3 -2.5 -3.5 21 21 A T H < S+ 0 0 0 -4,-1.0 3,-1.0 -3,-0.3 -2,-0.2 0.930 103.4 53.4 -71.5 -48.0 81.8 5.4 -5.9 26 26 A I H 3< S+ 0 0 42 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.811 135.0 11.5 -57.7 -29.4 85.1 5.3 -7.7 27 27 A D T 3< S+ 0 0 123 -4,-0.8 -1,-0.3 -5,-0.2 -2,-0.2 -0.273 86.0 164.0-146.4 54.7 83.1 4.7 -10.8 28 28 A L < - 0 0 6 -3,-1.0 4,-0.2 4,-0.2 -3,-0.1 -0.324 51.9 -76.4 -70.6 158.0 79.5 5.3 -10.1 29 29 A P > - 0 0 82 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 -0.007 49.7 -98.6 -48.8 159.1 77.1 5.8 -13.1 30 30 A Q T 3 S+ 0 0 188 1,-0.3 -2,-0.1 -3,-0.1 0, 0.0 0.469 115.9 84.8 -62.8 3.3 77.2 9.2 -14.9 31 31 A D T 3 S+ 0 0 154 1,-0.2 -1,-0.3 2,-0.0 -3,-0.0 0.157 88.1 51.2 -90.8 18.8 74.1 9.9 -12.7 32 32 A A < + 0 0 14 -3,-1.1 2,-1.7 -4,-0.2 -1,-0.2 -0.391 57.2 175.6-152.8 67.0 76.4 11.0 -9.9 33 33 A P S S+ 0 0 109 0, 0.0 -3,-0.1 0, 0.0 2,-0.1 0.143 74.5 74.7 -64.0 28.7 79.0 13.5 -10.9 34 34 A N >> + 0 0 60 -2,-1.7 4,-1.3 1,-0.1 3,-1.1 -0.535 52.4 171.8-142.4 69.5 80.0 13.6 -7.3 35 35 A R H 3> S+ 0 0 106 1,-0.3 4,-0.9 2,-0.2 -1,-0.1 0.702 82.5 61.5 -52.6 -18.3 81.9 10.4 -6.5 36 36 A Q H 3> S+ 0 0 49 2,-0.2 4,-1.2 3,-0.1 -1,-0.3 0.898 99.1 51.3 -76.7 -43.3 82.6 12.1 -3.2 37 37 A E H X> S+ 0 0 93 -3,-1.1 3,-1.8 1,-0.2 4,-1.1 0.975 109.0 48.5 -59.2 -57.7 78.9 12.3 -2.1 38 38 A V H >X S+ 0 0 34 -4,-1.3 4,-1.2 1,-0.3 3,-0.5 0.872 106.5 60.2 -50.5 -37.0 78.1 8.7 -2.7 39 39 A Q H 3X S+ 0 0 20 -4,-0.9 4,-2.1 -5,-0.3 -1,-0.3 0.845 94.3 64.3 -59.8 -33.1 81.2 8.0 -0.7 40 40 A D H S+ 0 0 24 -4,-1.9 4,-3.6 1,-0.3 5,-0.8 0.949 107.5 46.5 -54.3 -51.9 82.3 2.2 8.1 47 47 A N H X5S+ 0 0 35 -4,-2.1 4,-0.9 3,-0.2 -43,-0.6 0.836 115.1 49.9 -59.7 -31.6 81.1 3.7 11.4 48 48 A D H <>S+ 0 0 22 -4,-1.8 5,-2.0 -5,-0.2 -2,-0.2 0.937 120.7 31.9 -72.8 -48.6 78.6 0.9 11.5 49 49 A Y H ><5S+ 0 0 11 -4,-3.7 3,-0.7 3,-0.2 -2,-0.2 0.956 132.3 32.9 -73.5 -52.7 81.1 -1.9 10.8 50 50 A I H 3<5S+ 0 0 90 -4,-3.6 -3,-0.2 -5,-0.3 4,-0.2 0.788 129.9 37.4 -74.6 -30.5 84.1 -0.4 12.5 51 51 A S T 3< - 0 0 51 1,-0.2 4,-1.1 2,-0.1 5,-0.1 -0.342 20.1-175.0 -55.5 112.4 92.1 -12.2 5.8 63 63 A K H > S+ 0 0 132 -2,-0.3 4,-0.7 2,-0.2 -1,-0.2 0.721 81.8 52.5 -82.8 -22.7 93.7 -10.3 2.9 64 64 A S H >> S+ 0 0 21 2,-0.2 4,-2.0 1,-0.1 3,-0.6 0.934 106.1 50.5 -77.4 -49.2 90.5 -8.5 2.1 65 65 A F H 3> S+ 0 0 53 1,-0.3 4,-1.2 2,-0.2 5,-0.2 0.910 108.0 54.1 -55.1 -44.8 89.7 -7.2 5.6 66 66 A T H 3X S+ 0 0 70 -4,-1.1 4,-1.2 1,-0.2 -1,-0.3 0.828 107.3 52.4 -60.0 -31.2 93.3 -5.8 5.8 67 67 A T H S+ 0 0 9 -4,-0.7 4,-4.1 -3,-0.6 5,-0.6 0.881 96.5 65.7 -72.2 -38.5 92.6 -4.0 2.6 68 68 A M H X5S+ 0 0 24 -4,-2.0 4,-1.4 1,-0.3 -1,-0.2 0.870 108.4 41.1 -50.7 -37.9 89.4 -2.4 3.9 69 69 A Q H X5S+ 0 0 124 -4,-1.2 4,-1.4 2,-0.2 -1,-0.3 0.810 116.3 50.0 -79.7 -31.4 91.6 -0.6 6.4 70 70 A T H X5S+ 0 0 46 -4,-1.2 4,-1.2 2,-0.2 -2,-0.2 0.944 117.2 38.2 -71.7 -49.0 94.2 0.2 3.7 71 71 A A H X5S+ 0 0 2 -4,-4.1 4,-4.2 2,-0.2 -2,-0.2 0.844 108.7 65.2 -70.6 -33.6 91.8 1.5 1.2 72 72 A L H XX S+ 0 0 13 -4,-1.2 3,-1.2 2,-0.2 4,-0.9 0.930 107.6 56.4 -70.8 -46.9 93.1 6.1 0.9 75 75 A L H >X S+ 0 0 8 -4,-4.2 3,-2.9 1,-0.3 4,-1.2 0.963 105.3 49.1 -46.5 -68.7 89.4 6.7 0.2 76 76 A A H 3< S+ 0 0 32 -4,-1.9 4,-0.3 1,-0.3 -1,-0.3 0.698 101.1 71.2 -46.5 -19.7 89.1 9.5 2.7 77 77 A G H X4 S+ 0 0 25 -3,-1.2 3,-0.6 -4,-0.3 -1,-0.3 0.874 98.6 44.7 -67.3 -37.7 92.2 10.8 1.0 78 78 A Y H <<>S+ 0 0 48 -3,-2.9 5,-0.8 -4,-0.9 -2,-0.2 0.869 104.8 61.0 -73.8 -38.1 90.2 11.7 -2.2 79 79 A Y T ><5S+ 0 0 109 -4,-1.2 3,-1.5 3,-0.2 -1,-0.2 0.579 77.5 126.6 -65.7 -7.1 87.4 13.3 -0.2 80 80 A T G X 5S- 0 0 71 -3,-0.6 3,-1.9 1,-0.3 -3,-0.1 -0.334 98.4 -26.5 -56.4 121.6 90.1 15.7 1.1 81 81 A S G 3 5S- 0 0 112 1,-0.3 -1,-0.3 -2,-0.1 3,-0.2 0.653 110.6 -83.1 45.1 12.5 88.8 19.2 0.4 82 82 A Y G < 5 - 0 0 118 -3,-1.5 2,-1.0 1,-0.2 -1,-0.3 0.955 58.5-158.3 58.9 52.8 86.9 17.4 -2.4 83 83 A G < < - 0 0 12 -3,-1.9 2,-1.3 -5,-0.8 -1,-0.2 -0.494 8.0-164.3 -66.9 99.7 89.9 17.5 -4.8 84 84 A A + 0 0 100 -2,-1.0 -1,-0.2 -3,-0.2 3,-0.1 -0.114 51.4 117.5 -78.6 41.5 88.1 17.0 -8.1 85 85 A R S S- 0 0 138 -2,-1.3 -2,-0.0 1,-0.2 -3,-0.0 -0.664 79.6 -58.9-106.7 163.9 91.5 16.2 -9.6 86 86 A P S S- 0 0 118 0, 0.0 -1,-0.2 0, 0.0 6,-0.1 -0.045 70.8 -90.7 -40.3 132.0 92.7 12.9 -11.3 87 87 A I - 0 0 73 4,-0.1 5,-0.1 -61,-0.1 6,-0.1 -0.285 52.1-123.2 -50.9 108.6 92.5 10.0 -8.9 88 88 A P > - 0 0 26 0, 0.0 4,-4.0 0, 0.0 5,-0.4 0.087 20.8-105.1 -48.5 167.8 95.9 10.0 -7.2 89 89 A E H > S+ 0 0 142 2,-0.2 4,-4.6 1,-0.2 5,-0.5 0.954 122.7 46.4 -63.9 -51.4 98.1 6.9 -7.3 90 90 A K H > S+ 0 0 131 3,-0.2 4,-1.5 2,-0.2 5,-0.2 0.843 119.5 43.5 -60.7 -32.2 97.5 6.0 -3.7 91 91 A L H > S+ 0 0 2 3,-0.2 4,-3.6 2,-0.2 5,-0.3 0.969 123.4 34.0 -75.7 -57.3 93.8 6.6 -4.3 92 92 A K H X S+ 0 0 83 -4,-4.0 4,-3.9 2,-0.2 5,-0.3 0.912 123.1 47.8 -64.1 -44.0 93.6 4.9 -7.7 93 93 A K H X S+ 0 0 139 -4,-4.6 4,-3.9 -5,-0.4 5,-0.3 0.929 119.2 38.6 -64.5 -45.5 96.2 2.3 -6.7 94 94 A R H X S+ 0 0 102 -4,-1.5 4,-3.3 -5,-0.5 5,-0.2 0.913 123.3 42.3 -71.6 -40.7 94.5 1.6 -3.4 95 95 A L H X S+ 0 0 7 -4,-3.6 4,-3.8 -5,-0.2 -2,-0.2 0.879 121.8 41.7 -71.5 -36.2 91.0 1.9 -5.0 96 96 A Q H X S+ 0 0 103 -4,-3.9 4,-3.8 -5,-0.3 5,-0.4 0.942 120.3 42.4 -73.4 -47.8 92.3 -0.1 -7.9 97 97 A L H X S+ 0 0 64 -4,-3.9 4,-3.5 -5,-0.3 -2,-0.2 0.907 123.2 40.5 -63.9 -40.3 94.2 -2.5 -5.7 98 98 A E H X S+ 0 0 4 -4,-3.3 4,-3.4 -5,-0.3 5,-0.4 0.927 116.9 48.3 -73.1 -45.3 91.2 -2.5 -3.4 99 99 A F H X>S+ 0 0 55 -4,-3.8 4,-4.2 3,-0.2 5,-0.6 0.916 122.7 35.1 -60.9 -42.5 88.7 -2.6 -6.3 100 100 A T H X>S+ 0 0 38 -4,-3.8 5,-2.0 3,-0.3 4,-0.9 0.930 120.7 46.8 -77.8 -44.9 90.6 -5.4 -7.9 101 101 A Q H <5S+ 0 0 51 -4,-3.5 5,-0.4 -5,-0.4 -2,-0.2 0.849 126.3 34.4 -63.3 -29.9 91.6 -7.0 -4.6 102 102 A A H X5S+ 0 0 3 -4,-3.4 4,-1.3 -6,-0.2 -2,-0.2 0.924 134.1 25.9 -86.1 -55.5 87.9 -6.6 -3.7 103 103 A E H X5S+ 0 0 72 -4,-4.2 4,-1.6 -5,-0.4 -3,-0.3 0.942 128.8 42.2 -75.1 -51.7 86.3 -7.1 -7.0 104 104 A R H 4