==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 08-SEP-09 2KNY . COMPND 2 MOLECULE: LRP-1, LINKER, APO-E; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.GUTTMAN,E.A.KOMIVES . 80 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4598.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 64 0, 0.0 34,-0.2 0, 0.0 33,-0.1 0.000 360.0 360.0 360.0 -85.6 6.1 10.3 2.5 2 2 A S - 0 0 57 32,-1.8 32,-0.1 0, 0.0 33,-0.1 0.792 360.0 -2.2-103.0 -81.0 5.2 9.0 6.0 3 2AA K S S+ 0 0 144 29,-0.1 2,-0.7 31,-0.1 31,-0.1 0.068 97.4 125.7-102.6 22.6 6.5 5.6 6.8 4 2BA L - 0 0 23 30,-0.3 19,-0.0 1,-0.1 17,-0.0 -0.746 36.7-176.1 -87.4 115.3 8.0 5.1 3.4 5 3 A E S S- 0 0 73 -2,-0.7 -1,-0.1 1,-0.1 -2,-0.0 -0.151 74.6 -53.6-101.3 37.7 11.7 4.2 3.6 6 4 A G S S+ 0 0 56 2,-0.0 -1,-0.1 16,-0.0 2,-0.1 0.921 77.4 176.7 91.4 71.9 12.3 4.2 -0.1 7 5 A K - 0 0 29 15,-0.1 2,-0.2 1,-0.1 16,-0.1 -0.134 22.5-112.1 -92.0-168.6 9.8 1.9 -1.8 8 6 A T - 0 0 54 13,-0.1 6,-0.3 -2,-0.1 -1,-0.1 -0.700 7.0-153.6-122.1 174.7 9.2 1.2 -5.5 9 7 A a + 0 0 76 -2,-0.2 4,-0.3 4,-0.1 6,-0.1 0.234 69.1 94.8-131.8 8.6 6.5 1.9 -8.1 10 8 A G S S+ 0 0 57 2,-0.1 3,-0.4 4,-0.1 0, 0.0 0.955 85.7 21.4 -65.9 -91.6 7.1 -1.0 -10.5 11 9 A P S S- 0 0 84 0, 0.0 2,-1.1 0, 0.0 14,-0.0 0.445 131.5 -11.2 -56.6-153.4 4.7 -3.9 -9.7 12 10 A S S S+ 0 0 41 12,-0.1 13,-2.4 13,-0.0 14,-0.5 -0.242 100.3 130.5 -50.4 89.4 1.5 -3.5 -7.7 13 11 A S E -A 24 0A 24 -2,-1.1 2,-0.3 -3,-0.4 -4,-0.1 -0.846 47.3-142.8-139.2 174.9 2.2 0.1 -6.5 14 12 A F E -A 23 0A 38 9,-2.2 9,-2.4 -6,-0.3 2,-0.6 -0.965 22.5-123.0-147.0 125.7 0.6 3.5 -6.3 15 13 A S E -A 22 0A 74 -2,-0.3 7,-0.3 7,-0.3 6,-0.1 -0.562 35.6-118.2 -71.3 113.3 2.1 6.9 -6.8 16 14 A b > - 0 0 1 5,-1.2 3,-2.2 -2,-0.6 -1,-0.1 -0.338 34.7-118.2 -55.2 108.2 1.5 8.9 -3.6 17 15 A P T 3 S+ 0 0 58 0, 0.0 19,-0.4 0, 0.0 20,-0.3 -0.226 96.3 16.2 -52.4 129.9 -0.6 11.8 -4.8 18 16 A G T 3 S+ 0 0 91 1,-0.1 2,-0.4 18,-0.1 -2,-0.1 0.108 119.2 75.4 92.8 -22.6 1.1 15.2 -4.3 19 17 A T S < S- 0 0 42 -3,-2.2 -1,-0.1 2,-0.2 17,-0.0 -0.974 79.1-132.5-127.3 139.3 4.4 13.5 -3.7 20 18 A H S S+ 0 0 188 -2,-0.4 -1,-0.1 -3,-0.1 -4,-0.1 0.731 80.7 106.8 -57.1 -21.7 6.9 12.0 -6.2 21 19 A V - 0 0 25 -6,-0.1 -5,-1.2 -5,-0.1 2,-0.5 -0.146 64.2-143.4 -58.0 154.4 7.0 9.0 -3.8 22 20 A a E -A 15 0A 10 -7,-0.3 -7,-0.3 -15,-0.1 -15,-0.1 -0.963 7.5-157.0-129.3 115.2 5.2 5.8 -4.8 23 21 A V E -A 14 0A 0 -9,-2.4 -9,-2.2 -2,-0.5 5,-0.1 -0.767 25.8-112.3 -93.5 131.8 3.5 3.7 -2.2 24 22 A P E >> -A 13 0A 0 0, 0.0 4,-1.1 0, 0.0 3,-0.5 -0.115 21.8-117.2 -57.3 155.8 2.9 -0.1 -2.9 25 23 A E H 3> S+ 0 0 38 -13,-2.4 4,-0.7 1,-0.2 -12,-0.2 0.820 115.6 60.4 -64.6 -31.0 -0.6 -1.4 -3.4 26 24 A R H 34 S+ 0 0 53 -14,-0.5 -1,-0.2 1,-0.2 40,-0.1 0.836 103.8 50.3 -65.1 -32.6 -0.2 -3.6 -0.3 27 25 A W H X4 S+ 0 0 14 -3,-0.5 3,-1.8 1,-0.1 4,-0.4 0.776 92.6 82.5 -76.2 -27.2 0.3 -0.4 1.7 28 26 A L H >< S+ 0 0 0 -4,-1.1 3,-0.6 1,-0.3 4,-0.4 0.917 109.2 16.2 -39.5 -78.6 -2.8 1.1 0.3 29 27 A c T 3< S+ 0 0 4 -4,-0.7 -1,-0.3 1,-0.2 -2,-0.1 -0.071 92.9 115.1 -92.3 34.9 -5.4 -0.5 2.5 30 28 A D T < S- 0 0 39 -3,-1.8 -1,-0.2 2,-0.2 -2,-0.1 0.767 92.0-105.6 -73.1 -24.6 -2.8 -1.5 5.1 31 29 A G S < S+ 0 0 37 -3,-0.6 2,-0.2 -4,-0.4 -2,-0.1 0.798 88.9 89.7 102.6 40.3 -4.5 0.8 7.6 32 30 A D S S- 0 0 107 -4,-0.4 2,-1.2 -5,-0.4 -2,-0.2 -0.691 76.9-120.4-168.8 109.7 -2.1 3.8 7.8 33 31 A K + 0 0 111 1,-0.2 5,-0.1 -2,-0.2 6,-0.1 -0.304 39.3 167.4 -55.0 91.7 -2.0 6.9 5.7 34 32 A D + 0 0 6 -2,-1.2 -32,-1.8 -7,-0.2 -30,-0.3 0.820 56.3 72.0 -77.5 -32.6 1.5 6.5 4.2 35 33 A b S S- 0 0 2 -34,-0.2 3,-0.4 -3,-0.1 -17,-0.1 0.012 103.2 -96.5 -71.4-175.6 0.9 9.2 1.6 36 34 A A S S+ 0 0 61 -19,-0.4 -1,-0.1 1,-0.2 -18,-0.1 0.810 124.5 20.9 -74.3 -31.2 0.8 12.9 2.4 37 35 A D S S- 0 0 133 -20,-0.3 -1,-0.2 5,-0.0 -3,-0.1 -0.069 116.8 -96.8-127.7 32.2 -3.0 12.9 2.5 38 36 A G S >> S+ 0 0 1 -3,-0.4 4,-2.2 -5,-0.1 3,-0.7 0.727 75.8 146.5 60.0 21.0 -3.7 9.2 3.2 39 37 A A T 34 + 0 0 7 1,-0.3 6,-0.9 2,-0.2 7,-0.2 0.854 66.3 61.0 -55.6 -35.6 -4.2 8.8 -0.6 40 38 A D T 34 S+ 0 0 0 1,-0.2 -1,-0.3 4,-0.1 10,-0.1 0.902 114.5 33.2 -59.1 -41.7 -2.7 5.3 -0.3 41 39 A E T <4 S+ 0 0 8 -3,-0.7 10,-1.1 -12,-0.1 -1,-0.2 0.665 110.4 86.8 -87.4 -18.1 -5.5 4.3 2.1 42 40 A S S ><>S- 0 0 17 -4,-2.2 5,-1.0 8,-0.2 3,-0.7 -0.105 95.0-106.1 -73.0 176.9 -8.0 6.5 0.3 43 41 A I G > 5S+ 0 0 95 1,-0.2 3,-0.6 3,-0.2 5,-0.3 0.752 110.8 79.6 -76.7 -24.2 -10.0 5.5 -2.8 44 42 A A G 3 5S+ 0 0 71 1,-0.3 -1,-0.2 2,-0.1 -4,-0.1 0.797 99.5 43.0 -52.0 -28.6 -7.7 7.6 -5.0 45 43 A A G < 5S- 0 0 12 -6,-0.9 -1,-0.3 -3,-0.7 -2,-0.2 0.705 130.8 -96.2 -89.4 -24.4 -5.3 4.7 -4.7 46 44 A G T < 5S+ 0 0 16 -3,-0.6 -3,-0.2 -4,-0.5 -2,-0.1 0.717 72.3 145.8 111.4 35.5 -8.1 2.1 -5.2 47 45 A c < - 0 0 0 -5,-1.0 11,-0.3 -19,-0.1 -4,-0.2 0.573 56.5-133.7 -77.3 -7.3 -8.9 1.1 -1.7 48 46 A L S S+ 0 0 57 -5,-0.3 10,-0.2 1,-0.2 -5,-0.1 0.667 92.7 20.3 64.0 17.8 -12.5 0.7 -2.9 49 47 A Y S S- 0 0 35 -8,-0.2 3,-0.5 8,-0.1 -6,-0.2 0.231 95.9-127.7-177.4 -35.9 -13.8 2.6 0.2 50 48 A N S S- 0 0 56 -8,-0.3 2,-3.2 -9,-0.2 -8,-0.2 0.862 79.2 -18.6 67.9 107.7 -11.1 4.7 1.8 51 49 A S S > S+ 0 0 67 -10,-1.1 3,-2.7 3,-0.2 5,-0.3 -0.326 104.0 113.9 67.6 -66.9 -10.6 4.2 5.5 52 50 A T T 3 S+ 0 0 93 -2,-3.2 -1,-0.1 -3,-0.5 4,-0.1 -0.094 87.0 17.5 -40.0 112.3 -14.0 2.5 5.9 53 51 A G T > S- 0 0 41 4,-0.1 2,-1.2 2,-0.1 3,-0.6 0.482 95.6-131.7 99.0 5.0 -13.2 -1.0 6.9 54 52 A S T < S+ 0 0 91 -3,-2.7 -3,-0.2 1,-0.3 -23,-0.2 -0.259 97.3 12.1 51.4 -88.7 -9.6 -0.4 7.9 55 53 A G T 3 S+ 0 0 31 -2,-1.2 -1,-0.3 -25,-0.1 2,-0.3 -0.009 141.7 7.4-105.6 29.2 -8.1 -3.3 5.9 56 54 A S < + 0 0 30 -3,-0.6 2,-0.1 -5,-0.3 4,-0.1 -0.939 50.6 151.9-176.4-165.5 -11.2 -4.0 3.9 57 55 A G S S+ 0 0 46 -2,-0.3 -4,-0.1 2,-0.2 3,-0.1 -0.494 74.8 48.8 159.7 -83.4 -14.7 -2.9 3.1 58 56 A S S S- 0 0 94 -11,-0.3 2,-0.3 1,-0.2 -10,-0.1 0.880 114.5 -92.1 -55.8 -40.4 -16.3 -3.8 -0.2 59 57 A G >> - 0 0 26 1,-0.1 3,-1.3 0, 0.0 4,-0.8 -0.993 64.9 -29.5 158.7-160.7 -15.2 -7.4 0.2 60 129 A S H >> S+ 0 0 83 -2,-0.3 4,-2.8 1,-0.3 3,-0.7 0.851 121.7 70.8 -55.9 -36.2 -12.5 -10.0 -0.5 61 130 A T H 3> S+ 0 0 93 1,-0.3 4,-1.6 2,-0.2 -1,-0.3 0.865 93.6 56.2 -48.6 -40.6 -11.6 -8.0 -3.6 62 131 A E H <> S+ 0 0 5 -3,-1.3 4,-1.1 1,-0.2 -1,-0.3 0.897 113.5 38.6 -60.5 -41.6 -10.2 -5.3 -1.4 63 132 A E H S+ 0 0 95 -4,-0.8 4,-2.1 -3,-0.7 5,-0.8 0.751 106.4 68.3 -79.8 -25.1 -7.9 -7.8 0.3 64 133 A L H X5S+ 0 0 95 -4,-2.8 4,-0.6 1,-0.2 -2,-0.2 0.872 106.6 38.9 -60.8 -38.8 -7.3 -9.5 -3.1 65 134 A R H <5S+ 0 0 67 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.800 128.8 33.3 -81.4 -31.6 -5.4 -6.4 -4.3 66 135 A V H >X5S+ 0 0 8 -4,-1.1 3,-2.1 -5,-0.2 4,-0.6 0.942 118.5 46.6 -87.2 -63.8 -3.7 -5.8 -1.0 67 136 A R H ><5S+ 0 0 130 -4,-2.1 3,-2.8 1,-0.3 4,-0.4 0.892 103.8 63.8 -45.2 -51.8 -3.2 -9.3 0.6 68 137 A L T 3<>S+ 0 0 6 -3,-2.1 3,-1.8 -4,-0.2 4,-1.3 0.484 88.5 90.2 -97.3 -5.7 1.1 -8.1 -2.3 70 139 A S T <<5S+ 0 0 30 -3,-2.8 -1,-0.2 -4,-0.6 -2,-0.2 0.555 79.7 63.8 -68.4 -6.0 1.6 -8.8 1.4 71 140 A H T 345S+ 0 0 92 -4,-0.4 -1,-0.3 -3,-0.4 -2,-0.1 0.463 124.0 8.7 -95.5 -2.4 4.1 -11.5 0.5 72 141 A L T <>5S+ 0 0 76 -3,-1.8 4,-0.7 4,-0.0 -2,-0.2 0.489 123.7 51.8-136.0 -67.6 6.5 -9.0 -1.1 73 142 A R T <5S+ 0 0 5 -4,-1.3 3,-0.2 1,-0.2 -3,-0.2 0.901 134.2 16.1 -45.0 -52.0 5.7 -5.3 -0.6 74 143 A K T 4