==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 08-SEP-09 2KNZ . COMPND 2 MOLECULE: UBIQUILIN-4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.KIEKEN,G.SPAGNOL,V.SU,A.F.LAU,P.L.SORGEN . 53 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3836.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 77.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 49.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 108 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 107.5 23.2 -4.0 -3.5 2 2 A P - 0 0 132 0, 0.0 2,-0.8 0, 0.0 3,-0.0 -0.425 360.0-127.2 -59.7 123.5 19.9 -2.1 -3.4 3 3 A L - 0 0 114 -2,-0.2 3,-0.2 1,-0.2 0, 0.0 -0.650 29.2-179.9 -84.7 110.6 18.2 -3.0 -0.2 4 4 A G S S+ 0 0 66 -2,-0.8 2,-0.8 1,-0.2 -1,-0.2 0.523 73.6 87.1 -79.0 -6.0 14.6 -4.2 -0.7 5 5 A S + 0 0 109 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.238 69.8 80.2 -87.0 47.7 14.6 -4.6 3.1 6 6 A M > - 0 0 89 -2,-0.8 3,-2.6 -3,-0.2 4,-0.4 -0.538 63.8-179.9-145.2 65.8 13.6 -0.9 3.2 7 7 A P T >> S+ 0 0 67 0, 0.0 4,-4.0 0, 0.0 3,-1.9 0.743 72.1 62.7 -52.3 -34.6 9.8 -1.5 2.5 8 8 A E H 3>>S+ 0 0 97 1,-0.3 4,-0.9 2,-0.2 5,-0.7 0.715 87.7 72.6 -68.6 -16.9 8.8 2.2 2.7 9 9 A V H <45S+ 0 0 64 -3,-2.6 -1,-0.3 3,-0.2 -5,-0.0 0.784 119.4 19.0 -65.6 -24.3 11.0 2.9 -0.3 10 10 A R H <>5S+ 0 0 147 -3,-1.9 4,-2.0 -4,-0.4 -2,-0.2 0.758 132.1 46.9-102.1 -48.2 8.3 1.0 -2.2 11 11 A F H X5S+ 0 0 27 -4,-4.0 4,-2.0 1,-0.2 -3,-0.2 0.947 109.1 49.9 -62.1 -55.2 5.5 1.3 0.2 12 12 A Q H X5S+ 0 0 89 -4,-0.9 4,-1.5 1,-0.3 -1,-0.2 0.797 111.2 50.1 -62.5 -30.7 5.6 5.0 1.1 13 13 A Q H >< S+ 0 0 95 -4,-1.5 3,-0.6 2,-0.2 4,-0.4 0.937 113.6 39.6 -66.8 -46.8 -0.3 7.2 -4.6 18 18 A L H ><>S+ 0 0 0 -4,-2.6 5,-2.8 1,-0.2 3,-1.1 0.824 108.5 64.9 -67.0 -32.5 -3.0 5.8 -2.4 19 19 A N H ><5S+ 0 0 69 -4,-1.9 3,-0.5 1,-0.3 -1,-0.2 0.777 100.1 51.3 -56.5 -28.2 -2.8 9.1 -0.6 20 20 A S T <<5S+ 0 0 98 -4,-0.8 -1,-0.3 -3,-0.6 -2,-0.2 0.665 104.8 57.4 -81.1 -19.6 -4.0 10.6 -3.9 21 21 A M T < 5S- 0 0 100 -3,-1.1 -1,-0.2 -4,-0.4 -2,-0.2 0.303 127.7 -94.2 -98.7 3.8 -6.9 8.1 -3.8 22 22 A G T < 5S+ 0 0 53 -3,-0.5 2,-0.7 1,-0.2 -3,-0.2 0.642 88.1 129.1 89.9 16.8 -8.2 9.3 -0.5 23 23 A F < + 0 0 48 -5,-2.8 -1,-0.2 1,-0.1 -2,-0.2 -0.896 12.1 146.9-108.0 104.3 -6.3 6.6 1.4 24 24 A I + 0 0 103 -2,-0.7 2,-2.0 -3,-0.1 3,-0.2 0.289 35.4 110.7-121.5 4.6 -4.3 8.3 4.2 25 25 A N > - 0 0 84 1,-0.2 4,-3.1 -3,-0.1 3,-0.3 -0.648 50.7-170.9 -78.5 81.8 -4.5 5.5 6.7 26 26 A R H > S+ 0 0 85 -2,-2.0 4,-2.9 1,-0.3 5,-0.4 0.882 82.8 56.2 -43.0 -48.6 -0.8 4.8 6.3 27 27 A E H > S+ 0 0 141 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.941 113.5 38.5 -45.7 -57.7 -1.4 1.7 8.4 28 28 A A H > S+ 0 0 34 -3,-0.3 4,-2.0 2,-0.2 -2,-0.2 0.936 115.8 53.6 -63.7 -49.5 -4.0 0.4 6.0 29 29 A N H X S+ 0 0 0 -4,-3.1 4,-1.7 1,-0.2 3,-0.3 0.955 117.0 34.1 -48.3 -62.9 -2.2 1.6 2.9 30 30 A L H X S+ 0 0 36 -4,-2.9 4,-1.5 1,-0.2 -1,-0.2 0.783 112.9 60.1 -75.1 -24.5 1.2 -0.1 3.6 31 31 A Q H X S+ 0 0 102 -4,-2.1 4,-1.9 -5,-0.4 -1,-0.2 0.867 106.9 48.9 -65.0 -32.6 -0.4 -3.1 5.3 32 32 A A H X S+ 0 0 1 -4,-2.0 4,-0.9 -3,-0.3 -2,-0.2 0.900 111.6 48.3 -70.8 -38.2 -2.1 -3.6 1.9 33 33 A L H X>S+ 0 0 0 -4,-1.7 4,-1.8 -5,-0.2 5,-0.9 0.702 105.3 60.8 -73.5 -21.8 1.3 -3.2 0.4 34 34 A I H <5S+ 0 0 88 -4,-1.5 -2,-0.2 2,-0.2 -1,-0.2 0.952 110.0 38.8 -68.3 -49.7 2.7 -5.7 2.9 35 35 A A H <5S+ 0 0 76 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.643 124.9 41.1 -76.7 -14.2 0.5 -8.5 1.7 36 36 A T H <5S- 0 0 35 -4,-0.9 -1,-0.2 -5,-0.1 -2,-0.2 0.610 99.4-136.9-104.6 -18.3 0.9 -7.3 -1.9 37 37 A G T <5S- 0 0 61 -4,-1.8 -3,-0.2 1,-0.2 -4,-0.1 0.836 80.8 -29.2 67.2 35.0 4.6 -6.6 -1.7 38 38 A G S + 0 0 69 -6,-0.3 4,-2.4 1,-0.2 -1,-0.2 -0.726 28.0 178.2 -94.1 87.1 1.5 -4.2 -5.8 40 40 A I H > S+ 0 0 13 -2,-1.4 4,-2.6 1,-0.2 -1,-0.2 0.770 73.8 62.5 -67.7 -24.2 -0.4 -1.0 -5.3 41 41 A N H > S+ 0 0 98 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.964 110.9 37.4 -63.6 -52.2 -3.2 -2.2 -7.6 42 42 A A H > S+ 0 0 30 2,-0.2 4,-1.6 1,-0.2 -2,-0.2 0.817 110.7 63.4 -69.7 -32.5 -4.0 -5.0 -5.2 43 43 A A H X S+ 0 0 0 -4,-2.4 4,-1.6 2,-0.2 3,-0.4 0.954 107.8 41.9 -51.7 -51.7 -3.3 -2.7 -2.3 44 44 A I H X S+ 0 0 28 -4,-2.6 4,-2.8 1,-0.2 3,-0.4 0.940 112.4 53.8 -61.3 -47.3 -6.1 -0.5 -3.5 45 45 A E H X S+ 0 0 132 -4,-2.2 4,-1.8 1,-0.3 5,-0.3 0.709 107.5 52.6 -63.8 -20.7 -8.3 -3.5 -4.2 46 46 A R H X S+ 0 0 87 -4,-1.6 4,-1.5 -3,-0.4 -1,-0.3 0.823 110.7 46.0 -80.2 -34.7 -7.6 -4.6 -0.6 47 47 A L H < S+ 0 0 23 -4,-1.6 -2,-0.2 -3,-0.4 -3,-0.1 0.856 123.4 35.7 -73.0 -35.9 -8.7 -1.3 0.8 48 48 A L H < S+ 0 0 96 -4,-2.8 3,-0.2 -5,-0.1 -2,-0.2 0.856 130.8 32.4 -82.1 -38.7 -11.8 -1.3 -1.4 49 49 A G H < S+ 0 0 55 -4,-1.8 2,-1.3 -5,-0.3 -3,-0.2 0.907 114.8 53.4 -89.2 -46.5 -12.4 -5.0 -1.2 50 50 A S < + 0 0 65 -4,-1.5 2,-0.5 -5,-0.3 -1,-0.2 -0.627 63.1 134.1 -97.2 78.0 -11.2 -6.0 2.2 51 51 A Q - 0 0 131 -2,-1.3 2,-1.3 -3,-0.2 -4,-0.1 -0.788 31.5-175.0-123.3 85.5 -13.1 -3.6 4.5 52 52 A L 0 0 160 -2,-0.5 -2,-0.1 1,-0.2 -3,-0.0 -0.687 360.0 360.0 -92.2 91.0 -14.4 -5.9 7.2 53 53 A S 0 0 181 -2,-1.3 -1,-0.2 0, 0.0 0, 0.0 0.568 360.0 360.0-122.9 360.0 -16.6 -3.8 9.4