==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER APOPTOSIS 25-DEC-01 1KOY . COMPND 2 MOLECULE: DNA FRAGMENTATION FACTOR ALPHA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.FUKUSHIMA,J.KIKUCHI,S.KOSHIBA,T.KIGAWA,Y.KURODA, . 62 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4865.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 66.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 239 A S > 0 0 119 0, 0.0 4,-3.6 0, 0.0 5,-0.3 0.000 360.0 360.0 360.0 -36.0 0.3 -12.1 8.1 2 240 A H H > + 0 0 165 1,-0.2 4,-0.9 2,-0.2 5,-0.1 0.852 360.0 38.4 -60.9 -34.2 3.8 -11.8 6.7 3 241 A I H > S+ 0 0 105 2,-0.2 4,-1.6 3,-0.1 -1,-0.2 0.847 118.0 49.3 -82.8 -38.0 2.9 -8.4 5.4 4 242 A L H > S+ 0 0 87 2,-0.2 4,-3.5 1,-0.2 5,-0.2 0.872 105.9 56.2 -69.4 -39.6 0.8 -7.4 8.4 5 243 A T H < S+ 0 0 85 -4,-3.6 4,-0.4 1,-0.2 5,-0.2 0.933 113.7 40.3 -59.1 -45.7 3.5 -8.5 10.9 6 244 A A H <>S+ 0 0 37 -4,-0.9 5,-1.6 -5,-0.3 4,-0.3 0.814 115.3 53.7 -71.8 -30.4 6.0 -6.1 9.3 7 245 A L H <5S+ 0 0 9 -4,-1.6 4,-0.3 3,-0.3 -2,-0.2 0.943 108.0 47.5 -69.1 -47.7 3.2 -3.5 8.8 8 246 A R T <5S+ 0 0 154 -4,-3.5 -1,-0.2 2,-0.1 -2,-0.2 0.612 134.3 17.4 -67.3 -12.4 2.2 -3.6 12.5 9 247 A E T 5S- 0 0 133 -4,-0.4 -3,-0.2 -5,-0.2 -2,-0.2 0.613 137.0 -16.9-122.8 -79.0 6.0 -3.3 13.2 10 248 A K T 5 + 0 0 147 -4,-0.3 2,-0.4 -5,-0.2 -3,-0.3 -0.245 67.4 151.7-136.7 55.6 8.5 -2.1 10.5 11 249 A Q < - 0 0 17 -5,-1.6 6,-0.0 -4,-0.3 -8,-0.0 -0.718 39.0-139.3 -85.4 127.2 7.0 -2.3 7.0 12 250 A A > + 0 0 24 -2,-0.4 5,-1.2 1,-0.1 4,-0.2 -0.702 31.1 167.3 -94.8 93.2 8.6 0.3 4.7 13 251 A P T 5S+ 0 0 2 0, 0.0 42,-0.3 0, 0.0 -1,-0.1 -0.046 72.4 67.6 -89.0 33.1 5.9 1.8 2.5 14 252 A E T 5S- 0 0 31 40,-0.1 44,-0.2 39,-0.1 -2,-0.1 0.738 128.4 -23.9-111.3 -70.4 8.5 4.4 1.6 15 253 A L T 5S+ 0 0 116 43,-0.0 7,-0.1 7,-0.0 -3,-0.0 0.557 129.5 67.9-120.2 -23.9 11.3 2.9 -0.4 16 254 A S T 5S+ 0 0 97 -4,-0.2 2,-0.1 5,-0.0 5,-0.1 0.800 91.1 76.2 -70.7 -28.2 11.1 -0.8 0.6 17 255 A L S - 0 0 81 -2,-0.1 4,-2.2 -5,-0.0 5,-0.3 -0.161 39.9 -72.0-105.3-159.9 7.4 -1.4 -4.9 19 257 A S H > S+ 0 0 92 2,-0.2 4,-1.2 1,-0.2 5,-0.1 0.966 132.3 28.5 -63.1 -56.9 5.1 0.1 -7.5 20 258 A Q H > S+ 0 0 140 2,-0.2 4,-3.4 3,-0.2 5,-0.3 0.799 120.4 56.4 -76.4 -30.1 1.9 -1.8 -6.5 21 259 A D H > S+ 0 0 79 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.966 110.9 41.6 -66.6 -51.8 3.0 -2.2 -2.9 22 260 A L H X S+ 0 0 11 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.834 117.4 51.9 -63.6 -31.0 3.4 1.5 -2.3 23 261 A E H X S+ 0 0 108 -4,-1.2 4,-0.8 -5,-0.3 -2,-0.2 0.976 112.2 41.6 -68.8 -56.2 0.2 2.0 -4.3 24 262 A L H < S+ 0 0 111 -4,-3.4 3,-0.4 1,-0.2 -2,-0.2 0.854 118.6 48.7 -59.9 -33.5 -1.9 -0.5 -2.3 25 263 A V H >< S+ 0 0 4 -4,-2.6 3,-1.9 -5,-0.3 -1,-0.2 0.872 102.3 60.8 -73.5 -36.1 -0.3 0.9 0.8 26 264 A T H 3< S+ 0 0 48 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.704 107.4 47.6 -62.3 -17.4 -1.0 4.4 -0.4 27 265 A K T 3< S+ 0 0 154 -4,-0.8 2,-2.9 -3,-0.4 -1,-0.3 0.427 78.9 111.8-101.5 -2.7 -4.6 3.2 -0.2 28 266 A E < - 0 0 39 -3,-1.9 -3,-0.1 -5,-0.2 -1,-0.1 -0.440 64.5-156.9 -72.1 74.3 -4.1 1.7 3.2 29 267 A D >> - 0 0 86 -2,-2.9 4,-2.4 1,-0.1 3,-1.6 -0.109 30.5 -98.2 -55.3 152.5 -6.3 4.4 4.7 30 268 A P H 3> S+ 0 0 36 0, 0.0 4,-1.2 0, 0.0 -1,-0.1 0.728 123.6 61.1 -44.1 -28.2 -5.9 5.2 8.5 31 269 A K H 3> S+ 0 0 167 2,-0.2 4,-1.0 3,-0.1 -3,-0.1 0.896 115.2 29.0 -71.6 -39.3 -8.8 2.9 9.1 32 270 A A H <> S+ 0 0 51 -3,-1.6 4,-2.2 2,-0.2 5,-0.3 0.935 120.6 50.6 -85.3 -51.7 -7.1 -0.2 7.8 33 271 A L H X S+ 0 0 1 -4,-2.4 4,-1.9 1,-0.2 -2,-0.2 0.891 103.9 65.1 -52.2 -39.7 -3.5 0.6 8.5 34 272 A A H >< S+ 0 0 28 -4,-1.2 3,-0.6 -5,-0.5 5,-0.4 0.957 109.0 34.8 -47.3 -65.0 -4.7 1.4 12.0 35 273 A V H >< S+ 0 0 94 -4,-1.0 3,-3.0 1,-0.3 -2,-0.2 0.979 119.9 48.3 -55.7 -62.1 -5.6 -2.2 12.7 36 274 A A H 3< S+ 0 0 11 -4,-2.2 -1,-0.3 1,-0.3 -2,-0.2 0.680 125.9 33.7 -53.9 -15.0 -2.8 -3.8 10.6 37 275 A L T << S- 0 0 5 -4,-1.9 -1,-0.3 -3,-0.6 -2,-0.2 -0.152 89.3-165.6-129.0 32.0 -0.6 -1.3 12.5 38 276 A N < + 0 0 128 -3,-3.0 2,-0.2 6,-0.0 -3,-0.2 0.059 46.9 106.1 -31.5 88.0 -2.4 -1.3 15.7 39 277 A W S S- 0 0 59 -5,-0.4 2,-0.1 -2,-0.1 -2,-0.1 -0.752 82.3 -50.1-147.6-169.6 -0.8 1.7 17.2 40 278 A D > - 0 0 108 -2,-0.2 4,-4.1 1,-0.1 5,-0.3 -0.469 49.4-127.8 -72.7 145.9 -1.9 5.3 17.8 41 279 A I H > S+ 0 0 101 2,-0.3 4,-3.9 1,-0.2 5,-0.4 0.948 112.9 50.8 -60.5 -47.9 -3.5 6.9 14.7 42 280 A K H > S+ 0 0 152 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.862 117.7 42.8 -56.1 -33.8 -1.2 9.9 14.9 43 281 A K H > S+ 0 0 107 2,-0.2 4,-1.5 3,-0.1 -2,-0.3 0.885 117.7 42.3 -79.0 -43.8 1.6 7.3 15.2 44 282 A T H X S+ 0 0 0 -4,-4.1 4,-1.5 2,-0.2 -2,-0.2 0.849 115.2 51.0 -74.4 -31.8 0.3 4.9 12.5 45 283 A E H X S+ 0 0 66 -4,-3.9 4,-2.7 -5,-0.3 -1,-0.2 0.852 106.3 55.9 -71.1 -33.8 -0.6 7.7 10.2 46 284 A T H X S+ 0 0 76 -4,-1.0 4,-2.3 -5,-0.4 5,-0.2 0.897 105.7 50.2 -64.7 -40.3 2.9 9.2 10.7 47 285 A V H X S+ 0 0 37 -4,-1.5 4,-1.4 1,-0.2 -1,-0.2 0.884 116.1 43.2 -64.4 -36.3 4.5 5.9 9.5 48 286 A Q H X S+ 0 0 14 -4,-1.5 4,-1.6 2,-0.2 -2,-0.2 0.820 109.6 57.1 -76.1 -33.4 2.2 6.1 6.5 49 287 A E H X S+ 0 0 75 -4,-2.7 4,-1.8 1,-0.2 -2,-0.2 0.870 109.4 45.3 -66.1 -36.3 2.9 9.9 6.1 50 288 A A H X S+ 0 0 44 -4,-2.3 4,-1.6 1,-0.2 -1,-0.2 0.874 106.6 60.9 -72.5 -37.8 6.6 9.2 5.8 51 289 A C H X S+ 0 0 0 -4,-1.4 4,-1.4 -5,-0.2 -2,-0.2 0.865 107.7 44.1 -56.1 -40.5 5.8 6.3 3.4 52 290 A E H X S+ 0 0 75 -4,-1.6 4,-1.8 2,-0.2 5,-0.4 0.928 105.5 59.5 -72.1 -47.2 4.2 8.7 1.0 53 291 A R H X S+ 0 0 174 -4,-1.8 4,-1.3 1,-0.3 -1,-0.2 0.835 110.3 45.4 -51.5 -32.5 6.9 11.4 1.2 54 292 A E H X S+ 0 0 75 -4,-1.6 4,-3.3 2,-0.2 5,-0.3 0.864 103.2 65.0 -78.0 -38.2 9.3 8.7 0.0 55 293 A L H X S+ 0 0 60 -4,-1.4 4,-1.1 -42,-0.3 -2,-0.2 0.922 113.1 31.4 -49.9 -53.2 6.9 7.6 -2.7 56 294 A A H X S+ 0 0 49 -4,-1.8 4,-2.9 2,-0.2 -1,-0.2 0.832 116.2 59.0 -77.1 -32.5 7.1 10.9 -4.6 57 295 A L H X S+ 0 0 103 -4,-1.3 4,-0.7 -5,-0.4 -2,-0.2 0.917 112.0 40.5 -61.3 -42.7 10.7 11.6 -3.5 58 296 A R H < S+ 0 0 120 -4,-3.3 4,-0.3 2,-0.2 -1,-0.2 0.772 114.8 53.6 -75.4 -27.8 11.8 8.3 -5.2 59 297 A L H >< S+ 0 0 97 -4,-1.1 3,-0.7 -5,-0.3 -2,-0.2 0.872 110.5 44.9 -74.4 -38.9 9.5 9.0 -8.1 60 298 A Q H 3< S+ 0 0 159 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.630 94.2 81.1 -79.3 -14.7 11.0 12.4 -8.8 61 299 A Q T 3< 0 0 146 -4,-0.7 -1,-0.2 -5,-0.2 -2,-0.2 0.762 360.0 360.0 -62.2 -25.3 14.5 11.1 -8.4 62 300 A T < 0 0 146 -3,-0.7 -1,-0.2 -4,-0.3 -2,-0.2 0.859 360.0 360.0 -90.8 360.0 14.3 9.8 -12.0