==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 08-SEP-09 2KO2 . COMPND 2 MOLECULE: RETICULON-4; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.J.COCCO,J.SCHULZ,S.V.VASUDEVAN . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5134.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 71.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 17.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 13 A M > 0 0 147 0, 0.0 3,-2.3 0, 0.0 4,-0.5 0.000 360.0 360.0 360.0 -22.7 58.3 3.7 13.0 2 14 A R T 3> + 0 0 193 1,-0.3 4,-3.3 2,-0.2 3,-0.4 0.732 360.0 88.0 -40.8 -25.9 60.2 5.8 10.4 3 15 A I H 3> S+ 0 0 24 1,-0.3 4,-3.1 2,-0.3 -1,-0.3 0.900 84.6 52.5 -41.2 -51.0 59.4 2.8 8.1 4 16 A Y H <4 S+ 0 0 130 -3,-2.3 4,-0.5 1,-0.3 -1,-0.3 0.930 112.4 44.2 -52.5 -48.0 56.2 4.6 7.3 5 17 A K H >4 S+ 0 0 132 -4,-0.5 3,-0.8 -3,-0.4 -1,-0.3 0.865 114.7 50.4 -65.0 -35.3 58.2 7.7 6.4 6 18 A G H >< S+ 0 0 11 -4,-3.3 3,-2.1 1,-0.2 -2,-0.2 0.799 96.2 68.6 -71.6 -30.6 60.6 5.5 4.5 7 19 A V T >X S+ 0 0 13 -4,-3.1 3,-2.8 -5,-0.3 4,-1.1 0.710 76.7 85.9 -62.1 -17.3 57.8 3.9 2.6 8 20 A I H <> S+ 0 0 69 -3,-0.8 4,-3.9 -4,-0.5 5,-0.5 0.833 70.9 75.6 -52.1 -31.4 57.4 7.2 1.0 9 21 A Q H <> S+ 0 0 40 -3,-2.1 4,-1.5 1,-0.3 -1,-0.3 0.854 98.2 45.4 -49.5 -34.9 60.1 5.9 -1.4 10 22 A A H <4 S+ 0 0 1 -3,-2.8 -1,-0.3 -4,-0.2 6,-0.2 0.906 114.2 47.0 -74.3 -44.3 57.2 3.9 -2.8 11 23 A I H < S+ 0 0 96 -4,-1.1 -2,-0.2 1,-0.2 -3,-0.1 0.920 116.8 42.8 -64.1 -45.9 54.8 6.9 -2.9 12 24 A Q H < S+ 0 0 116 -4,-3.9 2,-3.5 1,-0.2 -1,-0.2 0.852 96.1 79.7 -69.4 -35.9 57.4 9.2 -4.5 13 25 A K ><> + 0 0 51 -4,-1.5 3,-3.1 -5,-0.5 5,-0.8 -0.207 51.7 155.7 -69.7 54.5 58.6 6.6 -6.9 14 26 A S T 3 5 + 0 0 80 -2,-3.5 3,-0.5 1,-0.3 -1,-0.2 0.511 67.5 69.5 -61.2 0.9 55.5 7.3 -9.1 15 27 A D T 3 5S+ 0 0 126 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.1 0.330 86.6 66.2 -98.9 4.1 57.8 5.8 -11.8 16 28 A E T < 5S- 0 0 104 -3,-3.1 -1,-0.2 -6,-0.2 -2,-0.1 -0.024 133.4 -81.4-113.0 27.0 57.5 2.4 -10.2 17 29 A G T 5 - 0 0 46 -3,-0.5 -3,-0.2 1,-0.2 -2,-0.1 0.678 62.8 -97.4 82.2 16.8 53.8 2.0 -10.9 18 30 A H < - 0 0 111 -5,-0.8 2,-0.4 1,-0.2 -1,-0.2 0.855 62.1-176.8 35.0 55.9 53.0 4.1 -7.9 19 31 A P + 0 0 30 0, 0.0 -1,-0.2 0, 0.0 -6,-0.1 -0.692 19.9 156.6 -86.1 129.9 52.5 0.9 -5.8 20 32 A F S > S+ 0 0 111 -2,-0.4 4,-1.4 3,-0.1 -9,-0.1 0.734 74.1 34.7-114.7 -59.4 51.3 1.4 -2.2 21 33 A R H > S+ 0 0 161 1,-0.2 4,-1.1 2,-0.2 0, 0.0 0.879 119.0 52.2 -69.2 -37.5 49.5 -1.6 -0.9 22 34 A A H > S+ 0 0 40 1,-0.2 4,-0.8 2,-0.2 3,-0.4 0.884 107.7 52.7 -66.3 -35.6 51.7 -4.0 -2.9 23 35 A Y H > S+ 0 0 45 1,-0.2 4,-0.9 2,-0.2 3,-0.5 0.841 100.9 63.0 -66.3 -33.4 54.8 -2.3 -1.4 24 36 A L H >X S+ 0 0 29 -4,-1.4 3,-0.6 1,-0.2 4,-0.5 0.853 91.5 64.4 -60.5 -36.8 53.4 -2.9 2.1 25 37 A E H >< S+ 0 0 3 -4,-1.1 3,-1.0 -3,-0.4 4,-0.4 0.920 105.7 43.5 -53.1 -46.7 53.5 -6.6 1.6 26 38 A S H 3X S+ 0 0 6 -4,-0.8 4,-1.0 -3,-0.5 3,-0.3 0.685 96.6 77.4 -73.3 -19.1 57.3 -6.4 1.4 27 39 A E H < S+ 0 0 7 -4,-1.0 3,-2.1 1,-0.1 -2,-0.2 0.758 77.4 105.5 -95.9 -35.3 61.7 -5.4 5.9 31 43 A S T 3< S+ 0 0 49 -4,-2.7 3,-0.3 1,-0.3 -28,-0.2 0.632 73.3 65.5 -15.7 -44.1 60.0 -3.8 8.9 32 44 A E T 3 S- 0 0 161 -4,-0.3 2,-0.4 1,-0.2 -1,-0.3 0.962 124.6 -4.1 -53.0 -58.3 63.3 -4.1 10.8 33 45 A E <> - 0 0 113 -3,-2.1 4,-1.4 1,-0.1 5,-0.4 -0.945 59.9-167.3-144.0 116.6 65.1 -1.6 8.5 34 46 A L H > S+ 0 0 13 -2,-0.4 4,-1.5 -3,-0.3 -1,-0.1 0.959 89.6 33.1 -68.4 -55.3 63.6 0.1 5.5 35 47 A V H > S+ 0 0 81 2,-0.2 4,-2.3 3,-0.2 5,-0.3 0.853 118.7 52.6 -72.6 -36.3 66.6 1.6 3.8 36 48 A Q H > S+ 0 0 110 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.964 116.9 35.4 -65.2 -53.3 69.1 -1.0 4.8 37 49 A K H X S+ 0 0 72 -4,-1.4 4,-2.1 2,-0.2 -1,-0.2 0.877 116.5 56.6 -68.0 -37.4 67.2 -4.1 3.5 38 50 A Y H < S+ 0 0 73 -4,-1.5 -2,-0.2 -5,-0.4 -1,-0.2 0.937 114.9 36.2 -59.0 -50.2 65.9 -2.1 0.6 39 51 A S H < S+ 0 0 85 -4,-2.3 3,-0.5 -5,-0.1 -1,-0.2 0.862 127.2 39.2 -71.5 -38.6 69.4 -1.2 -0.6 40 52 A N H < S+ 0 0 91 -4,-2.5 2,-1.7 -5,-0.3 3,-0.4 0.980 116.0 43.9 -77.3 -64.1 70.9 -4.5 0.4 41 53 A S X + 0 0 39 -4,-2.1 4,-1.5 1,-0.2 -1,-0.2 -0.171 66.8 145.4 -79.8 48.2 68.3 -7.1 -0.5 42 54 A A T 4 S+ 0 0 67 -2,-1.7 -1,-0.2 -3,-0.5 -2,-0.1 0.752 77.6 43.8 -54.1 -23.3 67.7 -5.4 -3.8 43 55 A L T >4 S+ 0 0 137 -3,-0.4 3,-4.0 2,-0.1 4,-0.3 0.933 99.4 63.1 -87.7 -58.5 67.1 -9.0 -5.0 44 56 A G T 3> S+ 0 0 41 1,-0.3 4,-2.0 2,-0.2 5,-0.3 0.768 88.5 75.9 -38.1 -33.3 64.9 -10.6 -2.2 45 57 A H H 3X S+ 0 0 36 -4,-1.5 4,-0.5 1,-0.2 -1,-0.3 0.655 89.1 63.5 -56.2 -15.6 62.3 -8.0 -3.2 46 58 A V H <> S+ 0 0 81 -3,-4.0 4,-1.2 2,-0.1 3,-0.2 0.986 111.7 23.8 -77.1 -65.4 61.7 -10.2 -6.3 47 59 A N H > S+ 0 0 87 -4,-0.3 4,-3.6 1,-0.2 5,-0.4 0.892 115.5 65.3 -69.6 -38.4 60.4 -13.6 -4.9 48 60 A S H X S+ 0 0 25 -4,-2.0 4,-2.9 1,-0.3 5,-0.4 0.890 101.3 53.3 -50.3 -38.2 59.1 -12.1 -1.7 49 61 A T H X S+ 0 0 48 -4,-0.5 4,-1.6 -5,-0.3 -1,-0.3 0.942 114.0 38.8 -62.5 -49.5 56.7 -10.2 -3.9 50 62 A I H X S+ 0 0 106 -4,-1.2 4,-0.7 2,-0.2 -2,-0.2 0.925 123.6 40.7 -68.4 -45.1 55.4 -13.3 -5.6 51 63 A K H X S+ 0 0 134 -4,-3.6 4,-0.7 1,-0.2 -2,-0.2 0.911 120.1 41.7 -68.6 -47.9 55.4 -15.5 -2.5 52 64 A E H X S+ 0 0 49 -4,-2.9 4,-3.3 -5,-0.4 5,-0.2 0.741 99.8 72.9 -74.7 -28.6 54.1 -12.9 0.0 53 65 A L H >X S+ 0 0 48 -4,-1.6 4,-1.9 -5,-0.4 3,-0.6 0.980 102.2 37.1 -53.5 -71.0 51.4 -11.3 -2.1 54 66 A R H 3X S+ 0 0 193 -4,-0.7 4,-1.3 1,-0.3 -1,-0.2 0.860 121.3 51.9 -49.1 -36.3 48.8 -14.1 -2.1 55 67 A R H 3X S+ 0 0 151 -4,-0.7 4,-1.7 2,-0.2 -1,-0.3 0.861 103.5 55.1 -68.4 -41.4 49.8 -14.7 1.4 56 68 A L H S+ 0 0 6 -4,-3.3 4,-2.3 -3,-0.6 5,-0.7 0.920 107.6 49.5 -61.7 -44.6 49.4 -11.1 2.6 57 69 A F H <5S+ 0 0 117 -4,-1.9 -1,-0.2 2,-0.2 -2,-0.2 0.872 106.3 56.3 -63.3 -37.4 45.8 -10.9 1.4 58 70 A L H <5S+ 0 0 150 -4,-1.3 -1,-0.2 -5,-0.3 -2,-0.2 0.910 120.5 30.3 -61.6 -41.2 45.0 -14.1 3.2 59 71 A V H <5S- 0 0 73 -4,-1.7 -2,-0.2 -3,-0.0 -1,-0.2 0.627 99.6-143.1 -91.7 -15.4 46.2 -12.6 6.5 60 72 A D T <5 + 0 0 107 -4,-2.3 -3,-0.2 -5,-0.2 4,-0.1 0.970 45.5 148.0 49.5 70.2 45.3 -9.0 5.6 61 73 A D >< + 0 0 54 -5,-0.7 4,-0.9 1,-0.1 -1,-0.1 0.044 29.4 113.2-118.9 21.8 48.3 -7.3 7.2 62 74 A L T 4 S+ 0 0 33 2,-0.2 4,-0.3 1,-0.2 3,-0.2 0.914 83.6 42.1 -61.4 -43.1 48.5 -4.4 4.7 63 75 A V T >4 S+ 0 0 107 1,-0.2 3,-0.7 2,-0.2 -1,-0.2 0.893 121.4 41.4 -70.0 -39.9 47.5 -1.9 7.3 64 76 A D G >4 S+ 0 0 94 1,-0.2 3,-1.0 2,-0.1 -1,-0.2 0.468 87.0 97.1 -85.5 -2.9 49.7 -3.5 10.0 65 77 A S G 3< S+ 0 0 1 -4,-0.9 -1,-0.2 1,-0.3 -34,-0.2 0.817 77.6 61.7 -55.1 -29.8 52.5 -4.1 7.4 66 78 A L G < 0 0 58 -3,-0.7 -1,-0.3 -4,-0.3 -2,-0.1 0.881 360.0 360.0 -64.3 -39.1 54.0 -0.9 8.8 67 79 A K < 0 0 192 -3,-1.0 -3,-0.1 -4,-0.2 -36,-0.1 0.199 360.0 360.0-141.7 360.0 54.4 -2.5 12.2