==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 09-SEP-09 2KO3 . COMPND 2 MOLECULE: NEDD8; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.S.CHOI,Y.H.JEON,C.CHEONG . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5287.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 73.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 80 0, 0.0 16,-2.0 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 132.1 3.8 -15.6 -5.0 2 2 A L E -A 16 0A 87 14,-0.2 62,-2.1 61,-0.1 63,-0.4 -0.399 360.0-179.8 -75.6 153.1 4.7 -12.5 -7.0 3 3 A I E -A 15 0A 2 12,-1.8 12,-1.4 60,-0.2 2,-0.4 -0.815 24.6-125.7-141.8-179.0 2.4 -9.4 -6.9 4 4 A K E -Ab 14 66A 82 61,-1.8 63,-1.9 -2,-0.2 2,-0.6 -0.899 15.5-164.0-141.2 108.9 2.1 -5.9 -8.3 5 5 A V E -Ab 13 67A 0 8,-2.6 8,-2.7 -2,-0.4 2,-0.5 -0.828 15.5-142.4 -96.6 117.9 1.6 -2.8 -6.0 6 6 A K E -Ab 12 68A 101 61,-3.0 63,-2.3 -2,-0.6 6,-0.2 -0.673 17.0-140.5 -81.9 121.8 0.4 0.3 -7.8 7 7 A T > - 0 0 13 4,-2.4 3,-0.8 -2,-0.5 63,-0.1 -0.406 24.5-109.3 -79.3 157.4 1.9 3.5 -6.5 8 8 A L T 3 S+ 0 0 115 1,-0.3 -1,-0.1 2,-0.1 62,-0.1 0.738 122.4 53.4 -56.8 -22.6 0.0 6.7 -6.0 9 9 A T T 3 S- 0 0 115 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.795 122.6-105.1 -83.1 -30.7 2.1 8.0 -8.9 10 10 A G S < S+ 0 0 41 -3,-0.8 2,-0.2 1,-0.4 -2,-0.1 0.211 74.2 135.1 124.8 -13.2 1.2 5.2 -11.2 11 11 A K - 0 0 165 -5,-0.1 -4,-2.4 1,-0.1 2,-0.7 -0.499 52.0-133.0 -71.0 131.7 4.4 3.2 -11.2 12 12 A E E -A 6 0A 119 -2,-0.2 2,-0.6 -6,-0.2 -6,-0.2 -0.775 17.2-157.2 -90.6 115.0 3.9 -0.6 -10.8 13 13 A I E -A 5 0A 19 -8,-2.7 -8,-2.6 -2,-0.7 2,-0.4 -0.825 6.9-148.4 -96.3 118.7 6.2 -2.1 -8.1 14 14 A E E +A 4 0A 97 -2,-0.6 2,-0.2 -10,-0.2 -10,-0.2 -0.692 29.2 154.4 -87.9 134.8 6.8 -5.8 -8.5 15 15 A I E -A 3 0A 20 -12,-1.4 -12,-1.8 -2,-0.4 2,-0.3 -0.787 34.2-127.2-143.5-174.1 7.4 -7.8 -5.3 16 16 A D E +A 2 0A 95 -14,-0.3 2,-0.3 -2,-0.2 -14,-0.2 -0.919 32.3 153.3-149.5 118.7 7.1 -11.3 -3.8 17 17 A I - 0 0 9 -16,-2.0 -2,-0.0 -2,-0.3 9,-0.0 -0.979 36.7-115.7-144.2 155.5 5.4 -12.4 -0.6 18 18 A E > - 0 0 108 -2,-0.3 3,-2.2 1,-0.1 38,-0.3 -0.603 31.3-112.7 -91.4 152.5 3.7 -15.5 0.8 19 19 A P T 3 S+ 0 0 34 0, 0.0 38,-2.3 0, 0.0 39,-0.3 0.736 120.3 56.5 -53.3 -23.3 -0.0 -15.7 1.7 20 20 A T T 3 S+ 0 0 109 36,-0.2 2,-0.6 37,-0.1 38,-0.0 0.704 79.9 105.7 -82.3 -21.4 1.1 -15.9 5.4 21 21 A D S < S- 0 0 38 -3,-2.2 35,-1.2 34,-0.1 5,-0.1 -0.472 71.8-135.8 -64.6 108.0 3.0 -12.6 5.1 22 22 A K B >> -E 55 0B 87 -2,-0.6 3,-1.6 33,-0.2 4,-1.4 -0.122 25.4-100.0 -60.8 161.8 0.9 -10.2 7.0 23 23 A V H 3> S+ 0 0 0 31,-1.5 4,-3.0 28,-0.4 5,-0.3 0.883 122.9 64.2 -50.4 -43.2 0.3 -6.7 5.6 24 24 A E H 3> S+ 0 0 81 28,-0.6 4,-1.8 30,-0.3 -1,-0.3 0.831 102.7 49.8 -51.1 -34.4 3.0 -5.3 7.9 25 25 A R H <> S+ 0 0 138 -3,-1.6 4,-1.7 2,-0.2 -1,-0.3 0.901 110.3 48.7 -72.9 -41.3 5.4 -7.4 5.9 26 26 A I H X S+ 0 0 1 -4,-1.4 4,-1.9 2,-0.2 -2,-0.2 0.941 110.8 50.8 -63.0 -48.0 4.2 -6.2 2.6 27 27 A K H X S+ 0 0 13 -4,-3.0 4,-2.1 1,-0.2 3,-0.2 0.928 108.9 51.1 -54.9 -49.3 4.4 -2.6 3.7 28 28 A E H X S+ 0 0 111 -4,-1.8 4,-2.1 -5,-0.3 -1,-0.2 0.863 107.3 54.9 -57.7 -37.0 8.0 -3.0 4.9 29 29 A R H X S+ 0 0 97 -4,-1.7 4,-1.1 1,-0.2 -1,-0.2 0.894 106.3 51.0 -64.0 -40.6 8.8 -4.5 1.5 30 30 A V H X>S+ 0 0 4 -4,-1.9 4,-2.6 -3,-0.2 5,-0.6 0.934 108.2 52.0 -62.6 -47.5 7.5 -1.5 -0.3 31 31 A E H X5S+ 0 0 80 -4,-2.1 4,-1.4 1,-0.3 5,-0.2 0.960 108.4 49.1 -53.8 -57.4 9.6 0.9 1.9 32 32 A E H <5S+ 0 0 121 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.769 114.0 51.4 -53.8 -27.1 12.8 -0.9 1.3 33 33 A K H <5S+ 0 0 119 -4,-1.1 -2,-0.2 -3,-0.5 -1,-0.2 0.957 130.5 8.3 -77.4 -56.3 11.9 -0.8 -2.4 34 34 A E H <5S- 0 0 113 -4,-2.6 -3,-0.2 2,-0.1 -2,-0.2 0.854 103.7-108.1 -94.9 -43.6 11.2 2.9 -3.0 35 35 A G << + 0 0 54 -4,-1.4 -4,-0.2 -5,-0.6 -3,-0.2 0.746 69.6 125.1 114.9 47.2 12.2 4.5 0.3 36 36 A I - 0 0 57 -5,-0.2 -1,-0.3 -6,-0.1 -2,-0.1 -0.997 65.7 -95.3-137.6 140.0 9.1 5.5 2.2 37 37 A P > - 0 0 63 0, 0.0 4,-0.7 0, 0.0 3,-0.5 -0.217 25.8-147.5 -52.2 133.3 7.8 4.6 5.7 38 38 A P T >4 S+ 0 0 10 0, 0.0 3,-1.0 0, 0.0 -10,-0.1 0.894 94.1 66.5 -70.9 -41.2 5.4 1.7 5.7 39 39 A Q T 34 S+ 0 0 171 1,-0.3 -11,-0.0 3,-0.0 -15,-0.0 0.755 105.1 46.8 -51.6 -25.4 3.3 3.0 8.6 40 40 A Q T 34 S+ 0 0 70 -3,-0.5 32,-1.9 33,-0.1 -1,-0.3 0.731 97.1 90.1 -89.1 -25.8 2.3 5.8 6.2 41 41 A Q E << -C 71 0A 13 -3,-1.0 2,-0.4 -4,-0.7 30,-0.2 -0.262 62.9-153.2 -69.1 158.7 1.5 3.5 3.3 42 42 A R E -C 70 0A 86 28,-1.3 28,-1.9 -15,-0.0 2,-0.8 -0.943 4.8-150.6-141.1 116.1 -2.0 2.1 2.8 43 43 A L E -C 69 0A 4 7,-0.4 7,-2.9 -2,-0.4 2,-0.5 -0.763 17.5-167.3 -89.5 109.0 -2.8 -1.2 1.0 44 44 A I E +CD 68 49A 38 24,-2.7 24,-2.2 -2,-0.8 2,-0.3 -0.835 15.6 159.7-100.3 130.3 -6.2 -1.0 -0.6 45 45 A Y E > + D 0 48A 28 3,-1.6 3,-1.1 -2,-0.5 22,-0.1 -0.967 63.8 0.2-152.3 132.1 -7.9 -4.2 -1.9 46 46 A S T 3 S- 0 0 82 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.857 125.3 -63.3 60.1 36.1 -11.5 -5.1 -2.7 47 47 A G T 3 S+ 0 0 72 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.791 118.5 107.4 59.7 28.1 -12.5 -1.6 -1.6 48 48 A K E < S-D 45 0A 127 -3,-1.1 -3,-1.6 -5,-0.0 2,-0.3 -0.977 74.4-120.0-142.1 125.0 -11.3 -2.3 1.9 49 49 A Q E -D 44 0A 110 -2,-0.4 2,-0.5 -5,-0.2 -5,-0.2 -0.453 32.5-123.9 -64.8 122.1 -8.2 -1.0 3.7 50 50 A M - 0 0 4 -7,-2.9 -7,-0.4 -2,-0.3 2,-0.2 -0.562 25.1-141.5 -71.9 117.4 -6.0 -4.0 4.6 51 51 A N > - 0 0 82 -2,-0.5 3,-2.6 1,-0.1 -28,-0.4 -0.564 17.7-121.1 -81.8 143.0 -5.4 -3.9 8.4 52 52 A D T 3 S+ 0 0 75 1,-0.3 -28,-0.6 -2,-0.2 -29,-0.2 0.746 114.6 62.1 -51.9 -25.2 -1.9 -4.8 9.7 53 53 A E T 3 S+ 0 0 136 -31,-0.1 -1,-0.3 -30,-0.1 2,-0.1 0.714 98.6 68.9 -75.3 -21.1 -3.7 -7.5 11.7 54 54 A K S < S- 0 0 72 -3,-2.6 -31,-1.5 -32,-0.0 -30,-0.3 -0.222 71.1-147.4 -88.5-178.0 -4.8 -9.1 8.5 55 55 A T B >> -E 22 0B 29 -33,-0.3 4,-1.3 -32,-0.1 3,-0.9 -0.970 32.7 -97.3-149.2 161.9 -2.8 -11.0 5.8 56 56 A A G >4>S+ 0 0 2 -35,-1.2 5,-2.2 -2,-0.3 3,-0.8 0.880 121.4 59.2 -45.6 -46.4 -2.7 -11.6 2.1 57 57 A A G >45S+ 0 0 57 -38,-2.3 3,-2.1 1,-0.3 -1,-0.3 0.897 101.1 54.1 -51.6 -45.0 -4.4 -15.0 2.7 58 58 A D G <45S+ 0 0 110 -3,-0.9 -1,-0.3 1,-0.3 -2,-0.2 0.831 111.9 44.9 -60.0 -32.4 -7.4 -13.2 4.2 59 59 A Y G <<5S- 0 0 29 -4,-1.3 -1,-0.3 -3,-0.8 -2,-0.2 0.089 109.2-125.8 -98.6 21.7 -7.6 -11.1 1.1 60 60 A K T < 5 + 0 0 133 -3,-2.1 2,-1.0 1,-0.2 -3,-0.2 0.776 43.4 178.4 37.4 35.1 -7.2 -14.2 -1.1 61 61 A I < - 0 0 10 -5,-2.2 -1,-0.2 -6,-0.1 2,-0.1 -0.542 5.4-174.3 -70.6 100.5 -4.3 -12.2 -2.7 62 62 A L > - 0 0 117 -2,-1.0 3,-2.5 -3,-0.2 2,-0.3 -0.398 41.6 -62.4 -91.4 171.0 -2.9 -14.7 -5.3 63 63 A G T 3 S+ 0 0 41 1,-0.3 -60,-0.2 -2,-0.1 -1,-0.1 -0.348 128.0 22.9 -56.7 113.9 0.1 -14.3 -7.5 64 64 A G T 3 S+ 0 0 33 -62,-2.1 -1,-0.3 1,-0.3 -61,-0.2 0.333 82.9 156.0 110.8 -4.8 -0.5 -11.3 -9.7 65 65 A S < - 0 0 15 -3,-2.5 -61,-1.8 -63,-0.4 2,-0.8 -0.265 43.1-127.1 -56.7 137.0 -3.0 -9.6 -7.5 66 66 A V E -b 4 0A 77 -63,-0.1 2,-0.5 -61,-0.1 -61,-0.2 -0.789 25.7-165.9 -93.2 106.6 -3.2 -5.8 -8.1 67 67 A L E -b 5 0A 0 -63,-1.9 -61,-3.0 -2,-0.8 2,-0.9 -0.799 13.7-140.2 -95.9 129.3 -2.8 -4.0 -4.8 68 68 A H E -bC 6 44A 105 -24,-2.2 -24,-2.7 -2,-0.5 2,-0.3 -0.776 18.6-158.4 -91.8 106.0 -3.7 -0.3 -4.8 69 69 A L E + C 0 43A 14 -63,-2.3 2,-0.3 -2,-0.9 -26,-0.2 -0.651 17.3 170.6 -86.0 138.0 -1.1 1.6 -2.7 70 70 A V E - C 0 42A 53 -28,-1.9 -28,-1.3 -2,-0.3 2,-0.2 -0.972 34.8 -99.4-144.9 157.8 -2.1 5.0 -1.2 71 71 A L E + C 0 41A 103 -2,-0.3 2,-0.3 -30,-0.2 -30,-0.2 -0.501 39.8 170.8 -78.7 146.1 -0.7 7.5 1.3 72 72 A A + 0 0 29 -32,-1.9 2,-0.3 -2,-0.2 -2,-0.0 -0.844 11.2 132.7-160.6 118.7 -2.1 7.6 4.9 73 73 A L - 0 0 99 -2,-0.3 3,-0.4 3,-0.1 -33,-0.1 -0.977 45.4-101.7-159.3 166.1 -0.9 9.5 7.9 74 74 A R S S+ 0 0 240 -2,-0.3 -1,-0.0 1,-0.2 -2,-0.0 0.012 78.5 82.8 -79.9-168.8 -2.1 11.7 10.8 75 75 A G 0 0 84 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.057 360.0 360.0 100.2 -32.7 -1.8 15.5 11.1 76 76 A G 0 0 139 -3,-0.4 -3,-0.1 0, 0.0 0, 0.0 -0.558 360.0 360.0-145.4 360.0 -4.9 16.2 9.1