==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 22-SEP-09 2KOG . COMPND 2 MOLECULE: VESICLE-ASSOCIATED MEMBRANE PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR J.F.ELLENA,B.LIANG,M.WIKTOR,A.STEIN,D.S.CAFISO,R.JAHN, . 116 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 12766.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 50.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 45.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 166 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 142.3 52.9 46.6 33.8 2 2 A S - 0 0 132 1,-0.3 2,-0.2 0, 0.0 0, 0.0 0.915 360.0 -17.3 -61.3 -44.0 51.8 43.0 33.9 3 3 A A + 0 0 84 2,-0.0 2,-0.4 0, 0.0 -1,-0.3 -0.715 67.5 175.5-168.7 112.1 50.5 43.2 30.3 4 4 A T + 0 0 106 -3,-0.2 2,-0.3 -2,-0.2 3,-0.1 -0.984 7.3 168.2-126.0 129.6 49.8 46.2 28.2 5 5 A A - 0 0 73 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.993 39.1-133.6-140.6 145.9 48.8 46.1 24.5 6 6 A A - 0 0 92 -2,-0.3 -1,-0.1 1,-0.0 0, 0.0 0.877 31.9-161.8 -63.8 -37.8 47.4 48.7 22.0 7 7 A T - 0 0 117 1,-0.1 -2,-0.0 -3,-0.1 -1,-0.0 0.974 15.0-144.2 51.7 64.8 44.8 46.2 20.9 8 8 A V - 0 0 123 1,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.169 21.7 -96.6 -57.1 152.0 44.0 48.0 17.6 9 9 A P - 0 0 106 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.136 59.3 -62.1 -65.5 166.0 40.4 47.9 16.5 10 10 A P - 0 0 121 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.138 41.1-131.8 -49.9 140.3 39.0 45.3 13.9 11 11 A A - 0 0 98 -3,-0.1 -3,-0.0 2,-0.0 0, 0.0 0.878 28.0-162.6 -63.6 -38.2 40.7 45.6 10.5 12 12 A A - 0 0 71 1,-0.1 -1,-0.0 3,-0.0 0, 0.0 0.976 4.9-162.7 50.7 73.2 37.2 45.5 8.8 13 13 A P - 0 0 127 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.854 20.3-156.2 -52.6 -38.7 38.4 44.6 5.2 14 14 A A + 0 0 94 1,-0.0 2,-0.1 2,-0.0 3,-0.1 0.777 43.4 104.3 59.6 118.9 35.0 45.8 3.9 15 15 A G + 0 0 65 1,-0.1 -1,-0.0 2,-0.0 -3,-0.0 -0.520 12.6 153.4-177.6-108.7 34.0 44.3 0.6 16 16 A E - 0 0 194 1,-0.2 -1,-0.1 -2,-0.1 2,-0.0 0.884 39.7-173.7 54.4 40.5 31.4 41.6 -0.2 17 17 A G + 0 0 74 1,-0.1 -1,-0.2 -3,-0.1 -3,-0.0 -0.352 26.8 140.7 -67.0 145.8 31.0 43.1 -3.7 18 18 A G + 0 0 70 -2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.042 21.7 176.1 178.9 51.9 28.3 41.6 -5.9 19 19 A P - 0 0 96 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.094 51.3 -92.6 -62.4 166.3 26.4 44.3 -7.9 20 20 A P - 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.849 49.0-156.0 -48.9 -38.5 23.7 43.4 -10.5 21 21 A A - 0 0 80 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.989 14.6-160.8 56.0 68.4 26.4 43.4 -13.1 22 22 A P - 0 0 101 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.330 33.0 -64.3 -77.6 161.4 24.1 44.1 -16.1 23 23 A P - 0 0 114 0, 0.0 2,-0.0 0, 0.0 -2,-0.0 0.097 69.7 -83.2 -39.3 155.2 25.0 43.4 -19.8 24 24 A P - 0 0 70 0, 0.0 4,-0.0 0, 0.0 0, 0.0 -0.348 27.8-131.7 -66.7 144.4 28.0 45.4 -21.3 25 25 A N S S+ 0 0 164 -3,-0.1 2,-0.4 1,-0.1 3,-0.1 0.894 94.4 41.6 -63.2 -40.5 27.3 48.9 -22.6 26 26 A L S S- 0 0 98 1,-0.1 3,-0.1 0, 0.0 -1,-0.1 -0.860 76.5-136.6-111.9 145.2 29.2 48.2 -25.8 27 27 A T S S+ 0 0 137 -2,-0.4 2,-0.3 1,-0.2 -1,-0.1 0.923 90.3 5.0 -62.5 -45.7 29.1 45.0 -27.8 28 28 A S S S+ 0 0 65 -3,-0.1 -1,-0.2 1,-0.0 3,-0.1 -0.990 70.8 125.1-142.3 149.0 32.8 44.9 -28.3 29 29 A N - 0 0 96 -2,-0.3 -2,-0.0 -3,-0.1 -1,-0.0 -0.036 64.0 -91.0-159.0 -88.6 35.8 47.0 -27.0 30 30 A R S > S+ 0 0 187 0, 0.0 4,-1.9 0, 0.0 5,-0.2 0.032 108.9 48.7-170.1 -65.7 38.8 45.6 -25.2 31 31 A R H > S+ 0 0 207 1,-0.2 4,-1.1 2,-0.2 -3,-0.0 0.907 113.7 50.7 -60.7 -42.8 38.6 45.4 -21.5 32 32 A L H >4 S+ 0 0 65 1,-0.2 3,-0.5 2,-0.2 6,-0.5 0.901 106.7 54.5 -62.3 -41.5 35.2 43.8 -21.6 33 33 A Q H 34 S+ 0 0 69 1,-0.3 -1,-0.2 4,-0.1 6,-0.2 0.902 104.8 53.6 -59.5 -41.9 36.4 41.2 -24.1 34 34 A Q H 3< S+ 0 0 161 -4,-1.9 -1,-0.3 4,-0.1 -2,-0.2 0.780 99.0 84.1 -63.8 -26.5 39.2 40.3 -21.7 35 35 A T S << S- 0 0 68 -4,-1.1 4,-0.4 -3,-0.5 3,-0.4 -0.094 90.2-118.1 -69.5 175.2 36.5 39.8 -19.0 36 36 A Q S > S+ 0 0 145 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.553 101.0 84.2 -91.3 -10.8 34.5 36.5 -18.6 37 37 A A H > S+ 0 0 47 -5,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.773 86.9 57.7 -62.1 -25.5 31.3 38.3 -19.3 38 38 A Q H > S+ 0 0 83 -6,-0.5 4,-1.0 -3,-0.4 3,-0.4 0.969 110.9 37.4 -69.5 -55.2 32.0 37.9 -23.0 39 39 A V H > S+ 0 0 83 -4,-0.4 4,-1.0 1,-0.2 -2,-0.2 0.766 109.1 67.5 -68.1 -25.0 32.3 34.1 -23.0 40 40 A D H >X S+ 0 0 90 -4,-2.0 4,-0.8 1,-0.2 3,-0.6 0.906 100.0 47.5 -61.7 -42.5 29.4 34.0 -20.5 41 41 A E H 3X S+ 0 0 117 -4,-1.2 4,-1.4 -3,-0.4 3,-0.4 0.824 103.7 62.5 -68.0 -31.6 27.0 35.3 -23.1 42 42 A V H 3X S+ 0 0 81 -4,-1.0 4,-2.7 1,-0.2 -1,-0.2 0.776 93.0 65.9 -64.5 -25.5 28.3 32.7 -25.6 43 43 A V H S- 0 0 67 -2,-0.3 4,-0.9 3,-0.1 5,-0.2 0.880 74.1-171.7 -63.2 -38.4 -3.8 4.9 -21.4 75 75 A S H > - 0 0 56 1,-0.2 4,-0.9 2,-0.1 3,-0.4 0.400 40.5 -94.7 57.5 154.9 -2.8 7.6 -23.8 76 76 A Q H > S+ 0 0 143 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.653 117.2 76.7 -75.9 -14.8 0.9 8.7 -24.2 77 77 A F H > S+ 0 0 146 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.925 95.8 45.2 -60.8 -45.8 0.3 11.4 -21.7 78 78 A E H X S+ 0 0 125 -4,-0.9 4,-0.9 -3,-0.4 -1,-0.2 0.901 113.7 49.4 -65.1 -41.4 0.4 8.9 -18.8 79 79 A T H X S+ 0 0 46 -4,-0.9 4,-0.9 -5,-0.2 3,-0.3 0.851 105.4 58.9 -66.3 -34.2 3.5 7.2 -20.2 80 80 A S H >X S+ 0 0 62 -4,-2.4 4,-1.2 1,-0.2 3,-0.9 0.913 101.0 54.0 -61.3 -43.8 5.2 10.6 -20.6 81 81 A A H 3X S+ 0 0 35 -4,-1.6 4,-2.2 1,-0.3 -1,-0.2 0.798 98.5 66.0 -61.2 -28.0 4.9 11.3 -16.9 82 82 A A H 3X S+ 0 0 44 -4,-0.9 4,-2.1 -3,-0.3 -1,-0.3 0.878 97.2 53.8 -61.7 -38.2 6.6 8.0 -16.3 83 83 A K H > + 0 0 157 -2,-0.1 4,-0.6 1,-0.1 3,-0.5 -0.537 29.6 156.5-153.3 79.0 17.0 5.0 -10.2 91 91 A K H 3> + 0 0 147 1,-0.2 4,-1.6 -5,-0.2 5,-0.1 0.596 68.2 79.2 -79.9 -10.7 16.1 1.5 -11.1 92 92 A N H 3> S+ 0 0 98 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.886 89.1 53.8 -63.3 -39.4 19.2 1.2 -13.2 93 93 A L H <> S+ 0 0 92 -3,-0.5 4,-2.6 1,-0.2 -1,-0.2 0.899 105.2 53.7 -62.5 -41.0 21.3 0.6 -10.1 94 94 A K H X S+ 0 0 114 -4,-0.6 4,-2.7 1,-0.2 5,-0.3 0.881 105.0 54.6 -61.2 -38.7 19.1 -2.3 -9.1 95 95 A M H X S+ 0 0 133 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.855 111.5 44.7 -63.5 -35.8 19.6 -3.9 -12.5 96 96 A M H X S+ 0 0 133 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.884 112.6 50.5 -75.4 -40.5 23.4 -3.7 -11.9 97 97 A I H X S+ 0 0 119 -4,-2.6 4,-1.2 2,-0.2 -2,-0.2 0.932 116.6 40.2 -63.6 -46.3 23.2 -5.0 -8.3 98 98 A I H X S+ 0 0 98 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.874 113.2 55.6 -70.1 -37.9 21.1 -8.0 -9.3 99 99 A L H X S+ 0 0 87 -4,-1.6 4,-2.4 -5,-0.3 5,-0.2 0.900 104.6 53.2 -61.6 -41.8 23.1 -8.5 -12.4 100 100 A G H X S+ 0 0 39 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.868 104.9 56.0 -61.9 -36.8 26.3 -8.8 -10.4 101 101 A V H X S+ 0 0 85 -4,-1.2 4,-1.5 2,-0.2 -1,-0.2 0.930 108.9 45.7 -61.6 -46.7 24.7 -11.4 -8.2 102 102 A I H X S+ 0 0 90 -4,-1.8 4,-1.4 1,-0.2 3,-0.4 0.940 114.8 46.9 -62.1 -48.2 23.9 -13.7 -11.2 103 103 A C H X S+ 0 0 54 -4,-2.4 4,-2.2 1,-0.2 -1,-0.2 0.863 106.0 60.5 -61.8 -36.3 27.3 -13.2 -12.7 104 104 A A H X S+ 0 0 41 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.874 101.5 53.7 -59.7 -37.6 28.9 -13.8 -9.3 105 105 A I H X S+ 0 0 91 -4,-1.5 4,-2.2 -3,-0.4 -1,-0.2 0.911 107.7 49.6 -64.0 -43.3 27.3 -17.3 -9.3 106 106 A I H X S+ 0 0 90 -4,-1.4 4,-2.5 1,-0.2 -2,-0.2 0.908 109.6 51.6 -62.5 -42.6 28.8 -18.2 -12.7 107 107 A L H X S+ 0 0 107 -4,-2.2 4,-2.5 1,-0.2 -1,-0.2 0.902 109.5 50.0 -61.7 -41.6 32.3 -17.0 -11.6 108 108 A I H X S+ 0 0 106 -4,-2.1 4,-2.7 2,-0.2 5,-0.2 0.911 110.7 49.3 -63.4 -43.3 32.1 -19.2 -8.5 109 109 A I H X S+ 0 0 101 -4,-2.2 4,-3.1 2,-0.2 -2,-0.2 0.916 112.3 47.8 -62.9 -43.6 31.0 -22.2 -10.5 110 110 A I H X S+ 0 0 94 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.914 113.2 48.0 -63.7 -43.6 33.9 -21.7 -13.0 111 111 A I H X S+ 0 0 116 -4,-2.5 4,-2.0 2,-0.2 -2,-0.2 0.918 116.0 43.4 -63.7 -44.2 36.4 -21.3 -10.2 112 112 A V H X S+ 0 0 77 -4,-2.7 4,-1.8 2,-0.2 -2,-0.2 0.912 114.5 50.2 -67.3 -43.8 35.1 -24.4 -8.4 113 113 A Y H < S+ 0 0 187 -4,-3.1 -2,-0.2 -5,-0.2 -1,-0.2 0.919 110.5 49.6 -61.1 -44.9 34.9 -26.4 -11.6 114 114 A F H < S+ 0 0 178 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.915 121.3 34.3 -60.5 -44.9 38.5 -25.4 -12.6 115 115 A S H < 0 0 80 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.611 360.0 360.0 -85.3 -13.6 39.8 -26.4 -9.2 116 116 A T < 0 0 159 -4,-1.8 -3,-0.2 -5,-0.2 -4,-0.1 0.896 360.0 360.0 39.1 360.0 37.3 -29.2 -8.9