==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 02-OCT-09 2KOX . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR R.B.FENWICK,B.RICHTER,D.LEE,K.F.A.WALTER,D.MILOVANOVIC,S.BEC . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5048.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 39 0, 0.0 16,-2.8 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 151.3 11.4 -7.6 -3.4 2 2 A Q E +A 16 0A 96 14,-0.2 62,-3.6 12,-0.0 2,-0.3 -0.848 360.0 177.6 -92.8 119.5 8.6 -9.2 -1.2 3 3 A I E -A 15 0A 0 12,-1.8 12,-2.5 -2,-0.5 2,-0.5 -0.884 21.4-130.0-121.9 163.3 6.5 -6.9 1.1 4 4 A F E -Ab 14 66A 43 61,-2.4 63,-3.2 -2,-0.3 2,-0.5 -0.933 13.5-164.8-115.9 123.9 3.6 -7.7 3.4 5 5 A V E -Ab 13 67A 2 8,-3.2 8,-2.9 -2,-0.5 2,-0.5 -0.914 6.0-158.5-111.6 122.3 0.2 -5.8 3.5 6 6 A K E -Ab 12 68A 77 61,-3.0 63,-3.6 -2,-0.5 6,-0.2 -0.814 8.9-159.9 -99.2 122.0 -2.1 -6.3 6.5 7 7 A T E - b 0 69A 23 4,-1.9 3,-0.5 -2,-0.5 63,-0.2 -0.558 33.7-104.9 -95.6 171.4 -5.9 -5.4 5.9 8 8 A L S S+ 0 0 130 61,-0.7 -1,-0.1 1,-0.2 62,-0.1 0.864 123.7 54.7 -67.6 -33.3 -8.4 -4.6 8.7 9 9 A T S S- 0 0 132 1,-0.1 -1,-0.2 2,-0.0 -3,-0.0 0.658 125.1-110.1 -69.1 -15.6 -10.1 -8.1 8.2 10 10 A G + 0 0 49 -3,-0.5 -2,-0.1 1,-0.3 -1,-0.1 0.470 61.4 159.9 103.4 0.4 -6.6 -9.3 8.8 11 11 A K - 0 0 102 1,-0.1 -4,-1.9 -5,-0.1 2,-0.8 -0.375 36.1-138.4 -52.0 134.4 -5.8 -10.6 5.2 12 12 A T E -A 6 0A 71 -6,-0.2 2,-0.5 -2,-0.1 -6,-0.2 -0.845 18.5-168.5-100.6 112.0 -2.1 -10.9 4.5 13 13 A I E -A 5 0A 5 -8,-2.9 -8,-3.2 -2,-0.8 2,-0.5 -0.808 5.5-159.9 -98.9 127.9 -1.5 -9.5 0.9 14 14 A T E -A 4 0A 66 -2,-0.5 2,-0.5 -10,-0.2 -10,-0.2 -0.939 12.5-172.4-111.9 128.4 2.0 -10.5 -0.3 15 15 A L E -A 3 0A 0 -12,-2.5 -12,-1.8 -2,-0.5 2,-0.6 -0.942 23.3-144.0-127.9 121.2 3.3 -8.3 -3.2 16 16 A E E +A 2 0A 123 -2,-0.5 2,-0.3 -14,-0.2 -14,-0.2 -0.717 44.6 147.9 -77.9 124.2 6.4 -8.6 -5.3 17 17 A V - 0 0 4 -16,-2.8 46,-0.0 -2,-0.6 -2,-0.0 -0.833 42.7-122.3-137.7-178.8 7.4 -5.0 -5.9 18 18 A E > - 0 0 102 -2,-0.3 3,-1.9 1,-0.0 38,-0.3 -0.888 29.9-111.4-129.8 152.9 10.7 -3.1 -6.4 19 19 A P T 3 S+ 0 0 50 0, 0.0 38,-2.4 0, 0.0 39,-0.3 0.727 115.5 57.4 -62.6 -22.9 11.9 -0.2 -4.2 20 20 A S T 3 S+ 0 0 92 36,-0.2 2,-0.2 35,-0.1 35,-0.0 0.151 82.6 111.0 -90.5 16.9 11.5 2.4 -7.0 21 21 A D < - 0 0 40 -3,-1.9 35,-2.1 1,-0.0 36,-0.2 -0.636 69.2-120.0 -85.1 148.8 7.7 1.5 -7.5 22 22 A T B > -E 55 0B 32 33,-0.2 4,-1.8 -2,-0.2 33,-0.2 -0.495 17.9-114.1 -80.6 164.7 5.2 4.2 -6.4 23 23 A I H > S+ 0 0 1 31,-2.3 4,-2.0 28,-0.4 29,-0.2 0.835 122.9 55.1 -69.3 -26.7 2.5 3.9 -3.7 24 24 A E H > S+ 0 0 114 28,-2.5 4,-1.8 30,-0.3 -1,-0.2 0.848 103.9 54.5 -72.4 -30.9 0.0 4.2 -6.7 25 25 A N H > S+ 0 0 86 27,-0.4 4,-2.3 2,-0.2 -2,-0.2 0.924 108.2 49.3 -57.2 -44.8 1.8 1.2 -8.2 26 26 A V H X S+ 0 0 2 -4,-1.8 4,-2.3 1,-0.2 -2,-0.2 0.937 109.5 50.9 -55.6 -46.7 1.1 -0.6 -4.9 27 27 A K H X S+ 0 0 14 -4,-2.0 4,-1.6 2,-0.2 -1,-0.2 0.820 111.8 47.8 -64.0 -38.8 -2.6 0.4 -5.0 28 28 A A H X S+ 0 0 47 -4,-1.8 4,-2.3 2,-0.2 5,-0.2 0.975 110.4 51.0 -73.2 -49.5 -2.9 -0.9 -8.6 29 29 A K H X S+ 0 0 81 -4,-2.3 4,-1.5 1,-0.2 -2,-0.2 0.887 111.3 48.3 -51.6 -47.9 -1.2 -4.2 -7.8 30 30 A I H X S+ 0 0 0 -4,-2.3 4,-3.3 2,-0.2 6,-0.4 0.888 108.9 53.6 -61.8 -36.0 -3.5 -4.8 -4.8 31 31 A Q H X S+ 0 0 84 -4,-1.6 4,-2.3 2,-0.2 -2,-0.2 0.944 104.8 55.6 -62.6 -42.9 -6.6 -4.0 -7.0 32 32 A D H < S+ 0 0 147 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.932 118.7 34.1 -55.8 -41.7 -5.4 -6.7 -9.5 33 33 A K H < S+ 0 0 116 -4,-1.5 -2,-0.2 -5,-0.2 -1,-0.2 0.914 134.1 20.2 -79.8 -45.5 -5.4 -9.2 -6.6 34 34 A E H < S- 0 0 71 -4,-3.3 -3,-0.2 2,-0.2 -2,-0.2 0.497 93.9-117.9-120.1 -4.9 -8.4 -8.2 -4.3 35 35 A G < + 0 0 61 -4,-2.3 -4,-0.2 -5,-0.4 -3,-0.1 0.463 65.2 142.5 82.0 3.5 -10.7 -6.0 -6.6 36 36 A I - 0 0 27 -6,-0.4 -1,-0.3 -5,-0.1 -2,-0.2 -0.629 49.5-132.8 -75.4 121.4 -10.2 -2.9 -4.3 37 37 A P >> - 0 0 56 0, 0.0 3,-2.0 0, 0.0 4,-0.6 -0.503 17.0-121.4 -74.8 145.3 -10.0 0.4 -6.3 38 38 A P G >4 S+ 0 0 33 0, 0.0 3,-0.9 0, 0.0 -10,-0.1 0.777 109.0 69.6 -47.8 -36.2 -7.0 2.7 -5.3 39 39 A D G 34 S+ 0 0 136 1,-0.2 -3,-0.0 -12,-0.0 -12,-0.0 0.662 102.6 41.8 -57.6 -30.8 -9.6 5.4 -4.5 40 40 A Q G <4 S+ 0 0 82 -3,-2.0 32,-3.2 31,-0.0 2,-0.3 0.374 100.2 95.2 -98.4 -4.9 -10.9 3.5 -1.5 41 41 A Q E << +C 71 0A 3 -3,-0.9 2,-0.4 -4,-0.6 30,-0.2 -0.733 45.4 179.9 -92.6 138.4 -7.4 2.4 -0.3 42 42 A R E -C 70 0A 92 28,-2.3 28,-2.8 -2,-0.3 2,-0.4 -0.976 16.3-155.0-131.3 139.6 -5.3 4.2 2.3 43 43 A L E -C 69 0A 5 7,-0.4 7,-2.7 -2,-0.4 2,-0.4 -0.901 6.5-164.2-122.5 130.1 -1.9 2.7 3.1 44 44 A I E -CD 68 49A 44 24,-2.4 24,-2.6 -2,-0.4 2,-0.4 -0.980 10.9-179.0-129.3 124.5 0.1 3.1 6.3 45 45 A F E > S- D 0 48A 36 3,-1.5 3,-2.0 -2,-0.4 22,-0.1 -0.994 79.5 -17.3-115.6 127.9 3.7 2.4 7.1 46 46 A A T 3 S- 0 0 81 -2,-0.4 3,-0.1 20,-0.4 -1,-0.1 0.790 129.9 -46.9 50.5 44.3 4.9 3.0 10.7 47 47 A G T 3 S+ 0 0 72 1,-0.2 2,-0.5 0, 0.0 -1,-0.3 0.368 113.2 122.1 77.6 6.1 1.9 5.2 11.7 48 48 A K E < -D 45 0A 100 -3,-2.0 -3,-1.5 1,-0.0 2,-0.3 -0.794 62.7-131.4-115.3 125.5 2.2 7.3 8.5 49 49 A Q E -D 44 0A 131 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.531 33.5-133.2 -65.1 125.8 -0.4 7.8 5.8 50 50 A L - 0 0 13 -7,-2.7 -7,-0.4 -2,-0.3 2,-0.3 -0.623 8.6-135.8-100.8 136.2 1.3 7.2 2.4 51 51 A E > - 0 0 103 -2,-0.3 3,-0.6 1,-0.1 -28,-0.4 -0.671 15.1-126.3 -99.6 141.3 1.0 9.4 -0.6 52 52 A D T 3 S+ 0 0 60 -2,-0.3 -28,-2.5 1,-0.2 -29,-0.4 0.849 98.3 42.5 -61.5 -42.9 0.4 8.0 -4.1 53 53 A G T 3 S+ 0 0 66 -30,-0.2 -1,-0.2 -31,-0.1 2,-0.1 0.684 94.0 97.7 -83.4 -12.7 3.2 9.5 -6.5 54 54 A R S < S- 0 0 119 -3,-0.6 -31,-2.3 -32,-0.1 -30,-0.3 -0.368 74.0-119.0 -73.3 157.3 6.0 8.9 -3.9 55 55 A T B >> -E 22 0B 42 -33,-0.2 4,-1.1 -32,-0.1 3,-0.5 -0.553 16.0-117.9 -98.5 154.4 8.3 5.7 -4.1 56 56 A L T 34>S+ 0 0 0 -35,-2.1 5,-3.0 -38,-0.3 3,-0.2 0.860 117.4 56.5 -53.3 -36.1 8.8 2.8 -1.6 57 57 A S T >45S+ 0 0 74 -38,-2.4 3,-1.0 -36,-0.2 -1,-0.2 0.807 101.4 55.9 -59.4 -39.9 12.5 3.9 -1.4 58 58 A D T <45S+ 0 0 104 -3,-0.5 -2,-0.2 1,-0.3 -1,-0.2 0.818 111.6 43.1 -74.9 -22.8 11.4 7.5 -0.4 59 59 A Y T 3<5S- 0 0 28 -4,-1.1 -1,-0.3 -3,-0.2 -2,-0.2 0.385 117.9-112.4 -95.8 -3.6 9.4 6.1 2.6 60 60 A N T < 5 + 0 0 122 -3,-1.0 2,-0.5 1,-0.2 -3,-0.2 0.906 62.1 157.1 68.4 38.6 12.2 3.6 3.5 61 61 A I < + 0 0 3 -5,-3.0 -1,-0.2 -42,-0.2 2,-0.2 -0.884 9.1 154.3-103.4 124.0 10.1 0.6 2.5 62 62 A Q > - 0 0 130 -2,-0.5 3,-1.6 1,-0.2 -44,-0.0 -0.777 47.0 -36.0-141.8-175.9 12.2 -2.5 1.7 63 63 A K T 3 S+ 0 0 125 1,-0.2 -60,-0.2 -2,-0.2 -1,-0.2 -0.025 120.7 11.1 -54.9 142.9 11.8 -6.3 1.7 64 64 A E T 3 S+ 0 0 123 -62,-3.6 -1,-0.2 1,-0.2 -61,-0.2 0.495 87.7 149.5 71.5 7.2 9.7 -8.0 4.5 65 65 A S < - 0 0 14 -3,-1.6 -61,-2.4 -63,-0.2 2,-0.6 -0.326 47.1-126.5 -61.6 144.1 8.3 -4.7 5.7 66 66 A T E -b 4 0A 62 -63,-0.1 -20,-0.4 -61,-0.1 2,-0.3 -0.904 30.1-178.7 -95.8 126.1 4.7 -4.7 7.2 67 67 A L E -b 5 0A 3 -63,-3.2 -61,-3.0 -2,-0.6 2,-0.4 -0.782 17.7-136.3-119.2 153.8 2.4 -2.2 5.6 68 68 A H E -bC 6 44A 82 -24,-2.6 -24,-2.4 -2,-0.3 2,-0.5 -0.938 7.4-148.2-122.7 139.5 -1.2 -1.7 6.7 69 69 A L E -bC 7 43A 4 -63,-3.6 -61,-0.7 -2,-0.4 2,-0.3 -0.912 15.6-177.5-118.3 126.5 -4.3 -1.3 4.5 70 70 A V E - C 0 42A 43 -28,-2.8 -28,-2.3 -2,-0.5 2,-0.6 -0.883 24.9-126.4-116.3 137.3 -7.3 0.8 5.5 71 71 A L E - C 0 41A 80 -2,-0.3 -30,-0.2 -30,-0.2 2,-0.1 -0.820 23.8-132.7 -86.0 118.8 -10.6 1.3 3.7 72 72 A R - 0 0 103 -32,-3.2 2,-0.1 -2,-0.6 -30,-0.0 -0.464 26.9-130.0 -59.0 137.8 -11.5 5.0 3.2 73 73 A L - 0 0 143 -2,-0.1 3,-0.4 1,-0.1 -1,-0.1 -0.484 14.2-113.5 -87.9 167.2 -15.1 5.8 4.1 74 74 A R S S+ 0 0 260 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 0.855 114.4 46.0 -59.0 -47.5 -18.0 7.6 2.3 75 75 A G 0 0 88 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 0.440 360.0 360.0 -83.4 -6.9 -18.1 10.6 4.7 76 76 A G 0 0 54 -3,-0.4 -4,-0.1 0, 0.0 -2,-0.0 0.131 360.0 360.0-132.0 360.0 -14.4 11.1 4.8