==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-MAY-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-OCT-09 2KPU . COMPND 2 MOLECULE: YBBR FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; . AUTHOR J.R.CORT,T.A.RAMELOT,Y.YANG,R.L.BELOTE,C.CICCOSANTI,J.HALEEM . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7081.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 60.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 24.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 24 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 182 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -73.9 -21.1 -2.3 -22.8 2 2 A S - 0 0 55 1,-0.1 3,-0.2 0, 0.0 4,-0.0 -0.825 360.0-132.3-114.2 153.0 -23.5 -0.7 -20.4 3 3 A Q S S+ 0 0 201 -2,-0.3 2,-0.6 1,-0.3 -1,-0.1 0.946 104.8 33.6 -66.3 -49.6 -25.4 2.6 -20.7 4 4 A T S S- 0 0 120 -3,-0.1 -1,-0.3 2,-0.0 2,-0.1 -0.937 88.8-143.8-107.9 111.1 -24.3 3.7 -17.3 5 5 A L - 0 0 106 -2,-0.6 -2,-0.0 -3,-0.2 0, 0.0 -0.366 20.2-120.6 -69.0 153.2 -20.8 2.6 -16.5 6 6 A D - 0 0 126 2,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.807 32.5-151.1 -65.7 -28.8 -20.1 1.7 -12.8 7 7 A R + 0 0 173 1,-0.2 32,-0.6 31,-0.1 -1,-0.1 0.830 46.7 139.4 62.1 34.7 -17.5 4.4 -12.9 8 8 A D - 0 0 51 30,-0.2 30,-0.2 32,-0.0 -1,-0.2 -0.788 34.3-167.0-112.8 86.0 -15.5 2.5 -10.3 9 9 A P - 0 0 31 0, 0.0 28,-2.8 0, 0.0 2,-0.6 -0.329 17.6-130.3 -71.7 153.0 -11.8 2.8 -11.2 10 10 A T E -A 36 0A 80 26,-0.2 2,-0.5 28,-0.0 26,-0.3 -0.926 20.1-152.5-107.4 113.1 -9.1 0.6 -9.7 11 11 A L E -A 35 0A 10 24,-2.6 24,-2.9 -2,-0.6 2,-0.8 -0.729 0.5-152.9 -90.2 127.8 -6.1 2.7 -8.5 12 12 A T E -A 34 0A 70 -2,-0.5 2,-0.3 22,-0.2 22,-0.2 -0.858 19.2-177.3-103.6 102.9 -2.8 0.9 -8.4 13 13 A L E -A 33 0A 0 20,-2.0 20,-3.2 -2,-0.8 2,-0.2 -0.771 25.7-120.2-102.9 144.1 -0.6 2.5 -5.7 14 14 A S E -A 32 0A 63 32,-0.5 37,-2.0 35,-0.4 2,-0.5 -0.568 28.4-120.6 -76.9 144.0 3.0 1.6 -4.9 15 15 A L E +b 51 0B 6 16,-2.5 2,-0.2 -2,-0.2 37,-0.2 -0.765 37.9 178.6 -88.3 127.3 3.7 0.4 -1.4 16 16 A I E -b 52 0B 58 35,-3.0 37,-2.0 -2,-0.5 2,-0.5 -0.763 30.2-110.6-122.8 171.2 6.2 2.6 0.5 17 17 A A E -b 53 0B 37 -2,-0.2 2,-0.4 35,-0.2 3,-0.3 -0.911 31.6-166.9-107.1 122.2 7.8 2.7 4.0 18 18 A K E +b 54 0B 104 35,-1.8 37,-1.7 -2,-0.5 38,-0.1 -0.897 69.7 0.2-114.9 139.9 6.8 5.5 6.3 19 19 A N S S+ 0 0 111 -2,-0.4 -1,-0.2 1,-0.2 35,-0.0 0.793 89.7 162.4 56.1 32.0 8.5 6.6 9.5 20 20 A T - 0 0 47 -3,-0.3 -1,-0.2 2,-0.0 36,-0.1 -0.725 28.9-146.7 -90.0 114.7 10.8 3.7 8.8 21 21 A P - 0 0 50 0, 0.0 3,-0.4 0, 0.0 -1,-0.0 -0.292 21.7-119.1 -71.7 163.9 14.1 3.8 10.8 22 22 A A S S+ 0 0 75 1,-0.2 -2,-0.0 3,-0.1 3,-0.0 0.616 110.1 71.2 -80.9 -13.3 17.4 2.5 9.4 23 23 A N S S+ 0 0 99 1,-0.2 69,-2.0 69,-0.1 2,-0.9 0.844 93.1 61.0 -67.2 -35.0 17.5 -0.0 12.2 24 24 A S E S-D 91 0C 10 -3,-0.4 2,-0.7 67,-0.2 -1,-0.2 -0.834 78.9-168.8 -95.2 102.7 14.7 -1.8 10.5 25 25 A M E -D 90 0C 76 65,-2.8 65,-2.9 -2,-0.9 2,-0.6 -0.835 13.5-143.5-102.8 112.0 16.0 -2.8 7.1 26 26 A I E +D 89 0C 43 -2,-0.7 63,-0.2 63,-0.2 4,-0.1 -0.618 22.3 174.8 -75.4 113.5 13.4 -4.1 4.7 27 27 A M + 0 0 124 61,-1.5 2,-0.6 -2,-0.6 -1,-0.2 0.236 57.4 94.2 -99.8 10.9 14.9 -6.9 2.6 28 28 A T S S- 0 0 44 60,-0.3 2,-0.1 3,-0.0 -2,-0.0 -0.921 82.4-122.5-105.4 119.2 11.5 -7.4 1.0 29 29 A K - 0 0 195 -2,-0.6 -2,-0.1 1,-0.1 0, 0.0 -0.371 33.6-111.4 -60.8 136.1 10.9 -5.6 -2.3 30 30 A L - 0 0 72 -4,-0.1 -1,-0.1 -15,-0.1 -15,-0.0 -0.568 35.1-159.4 -81.9 122.9 7.9 -3.4 -2.0 31 31 A P - 0 0 62 0, 0.0 -16,-2.5 0, 0.0 2,-0.4 0.056 18.9 -99.6 -83.5-164.9 4.8 -4.4 -4.1 32 32 A S E -A 14 0A 53 -18,-0.2 2,-0.3 2,-0.0 -18,-0.2 -0.945 22.5-139.5-125.4 144.9 1.8 -2.5 -5.4 33 33 A V E -A 13 0A 2 -20,-3.2 -20,-2.0 -2,-0.4 2,-0.6 -0.802 6.7-149.4-104.2 144.4 -1.7 -2.3 -4.0 34 34 A R E -A 12 0A 153 47,-1.5 2,-0.5 -2,-0.3 47,-0.4 -0.876 18.0-171.4-118.1 99.2 -4.8 -2.3 -6.2 35 35 A V E -A 11 0A 0 -24,-2.9 -24,-2.6 -2,-0.6 2,-0.5 -0.767 19.4-139.0 -98.9 128.8 -7.7 -0.4 -4.6 36 36 A K E -A 10 0A 77 -2,-0.5 42,-3.2 -26,-0.3 43,-1.6 -0.751 32.1-168.7 -80.6 124.3 -11.2 -0.3 -6.0 37 37 A T E -F 77 0D 0 -28,-2.8 2,-1.1 -2,-0.5 40,-0.2 -0.945 29.5-143.0-126.1 138.9 -12.4 3.2 -5.7 38 38 A E E S+F 76 0D 106 38,-2.1 38,-3.0 -2,-0.4 2,-0.2 -0.793 76.7 68.8 -94.0 89.6 -15.7 5.0 -6.0 39 39 A G S S- 0 0 12 -2,-1.1 2,-0.4 -32,-0.6 36,-0.1 -0.599 72.9-123.6 161.7 136.6 -14.6 8.2 -7.7 40 40 A Y - 0 0 142 -2,-0.2 4,-0.1 34,-0.2 -2,-0.0 -0.814 22.0-174.9-104.4 135.8 -13.1 9.3 -11.0 41 41 A N + 0 0 27 -2,-0.4 -2,-0.0 1,-0.1 34,-0.0 -0.902 20.6 161.9-135.1 102.5 -9.8 11.1 -11.2 42 42 A P S S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.537 92.2 31.9 -88.0 -10.1 -8.5 12.5 -14.5 43 43 A S S S+ 0 0 88 2,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.750 95.4 91.8-113.2 -45.1 -6.2 14.8 -12.7 44 44 A I - 0 0 35 29,-0.1 2,-0.3 -4,-0.1 -3,-0.1 -0.278 69.8-137.8 -57.9 136.5 -5.2 12.9 -9.5 45 45 A N > - 0 0 93 1,-0.1 4,-1.5 -3,-0.0 -1,-0.1 -0.746 14.7-141.3-101.7 147.4 -2.1 10.8 -9.9 46 46 A V T 4 S+ 0 0 65 -2,-0.3 -32,-0.5 1,-0.2 -1,-0.1 0.496 112.8 53.2 -80.9 -5.9 -1.4 7.3 -8.7 47 47 A N T 4 S+ 0 0 121 -34,-0.1 -1,-0.2 3,-0.1 -3,-0.0 0.579 105.0 54.5 -93.0 -19.3 2.1 8.6 -8.0 48 48 A E T 4 S+ 0 0 116 -3,-0.0 2,-0.4 2,-0.0 -2,-0.2 0.800 106.5 59.7 -80.8 -32.6 0.5 11.4 -6.0 49 49 A L S < S- 0 0 10 -4,-1.5 -35,-0.4 20,-0.0 2,-0.3 -0.796 74.6-174.0 -94.4 138.5 -1.4 8.8 -3.9 50 50 A F - 0 0 53 -2,-0.4 20,-2.6 -37,-0.1 2,-0.5 -0.958 23.1-143.3-133.3 152.6 0.7 6.4 -2.0 51 51 A A E -bC 15 69B 0 -37,-2.0 -35,-3.0 -2,-0.3 2,-0.3 -0.976 30.7-174.5-110.8 125.1 0.2 3.3 0.2 52 52 A Y E -bC 16 68B 49 16,-3.3 16,-3.0 -2,-0.5 2,-0.5 -0.805 24.9-135.4-121.2 159.4 2.5 3.1 3.1 53 53 A V E -b 17 0B 0 -37,-2.0 -35,-1.8 -2,-0.3 2,-0.8 -0.971 25.1-131.8-112.5 123.5 3.4 0.7 5.9 54 54 A D E +b 18 0B 65 -2,-0.5 3,-0.3 12,-0.5 12,-0.2 -0.659 27.7 175.0 -78.0 110.5 3.8 2.2 9.3 55 55 A L + 0 0 0 -37,-1.7 3,-0.2 -2,-0.8 -1,-0.1 -0.030 42.7 117.6-106.9 29.3 7.0 0.9 10.8 56 56 A S S S+ 0 0 59 1,-0.3 2,-1.3 -38,-0.1 -1,-0.2 0.914 76.8 54.7 -57.9 -43.8 6.8 3.1 13.9 57 57 A G S S- 0 0 44 -3,-0.3 2,-1.4 2,-0.1 -1,-0.3 -0.714 90.0-156.5 -90.8 84.8 6.6 -0.2 15.8 58 58 A S + 0 0 61 -2,-1.3 -3,-0.1 -3,-0.2 -2,-0.1 -0.473 19.2 173.3 -71.1 91.1 9.8 -1.7 14.4 59 59 A E - 0 0 102 -2,-1.4 30,-0.4 2,-0.1 4,-0.1 -0.893 22.8-143.1-101.3 107.7 9.2 -5.5 14.9 60 60 A P + 0 0 72 0, 0.0 30,-0.2 0, 0.0 2,-0.2 -0.318 58.8 47.2 -68.3 152.2 12.1 -7.4 13.2 61 61 A G E S-E 89 0C 26 28,-3.5 28,-2.5 2,-0.1 2,-1.0 -0.548 108.7 -35.5 110.0-179.4 11.4 -10.7 11.4 62 62 A E E S+E 88 0C 146 26,-0.3 2,-0.4 -2,-0.2 26,-0.3 -0.712 78.6 164.6 -80.1 103.0 8.8 -11.8 8.9 63 63 A H E -E 87 0C 68 24,-2.8 24,-2.4 -2,-1.0 2,-0.5 -0.949 40.0-117.2-129.1 143.3 5.8 -9.8 10.2 64 64 A D E -E 86 0C 93 -2,-0.4 2,-0.3 22,-0.3 22,-0.3 -0.667 35.1-174.9 -81.7 125.0 2.4 -8.9 8.7 65 65 A Y E -E 85 0C 20 20,-3.3 20,-3.3 -2,-0.5 2,-0.3 -0.904 25.0-112.5-120.9 151.2 1.9 -5.2 8.2 66 66 A E E -E 84 0C 105 -2,-0.3 2,-0.9 18,-0.2 -12,-0.5 -0.640 22.4-127.4 -85.1 134.5 -1.2 -3.3 7.1 67 67 A V - 0 0 2 16,-2.2 2,-0.8 -2,-0.3 -14,-0.2 -0.719 27.5-163.4 -79.1 106.4 -1.2 -1.5 3.8 68 68 A K E -C 52 0B 70 -16,-3.0 -16,-3.3 -2,-0.9 2,-0.4 -0.834 1.4-161.4 -99.7 106.1 -2.2 2.0 4.7 69 69 A V E -C 51 0B 18 -2,-0.8 -18,-0.3 -18,-0.3 3,-0.1 -0.700 25.5-111.4 -87.1 134.9 -3.4 4.0 1.6 70 70 A E - 0 0 66 -20,-2.6 -1,-0.1 -2,-0.4 -21,-0.0 -0.435 45.7 -92.7 -63.7 135.3 -3.5 7.8 1.9 71 71 A P - 0 0 117 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 -0.224 38.7-133.5 -52.5 132.3 -7.1 9.1 1.9 72 72 A I > - 0 0 15 3,-0.4 3,-1.8 -3,-0.1 2,-0.2 -0.811 21.5-115.5 -97.5 121.1 -8.2 10.0 -1.7 73 73 A P T 3 S- 0 0 78 0, 0.0 -29,-0.1 0, 0.0 3,-0.1 -0.350 92.1 -11.2 -59.6 119.3 -10.0 13.4 -2.0 74 74 A N T 3 S+ 0 0 170 -2,-0.2 2,-0.4 1,-0.2 -34,-0.2 0.607 114.7 106.4 69.2 15.1 -13.6 13.1 -3.1 75 75 A I < - 0 0 15 -3,-1.8 -3,-0.4 -36,-0.1 2,-0.3 -0.989 65.7-132.9-129.5 130.1 -13.1 9.4 -3.9 76 76 A K E -F 38 0D 132 -38,-3.0 -38,-2.1 -2,-0.4 2,-0.7 -0.607 13.4-137.1 -80.9 137.4 -14.3 6.4 -1.9 77 77 A I E +F 37 0D 80 -2,-0.3 -40,-0.2 -40,-0.2 3,-0.1 -0.852 31.0 165.1 -93.4 116.9 -12.0 3.6 -1.0 78 78 A V + 0 0 73 -42,-3.2 2,-0.3 -2,-0.7 -41,-0.2 0.858 64.5 23.7 -95.6 -50.3 -13.8 0.3 -1.5 79 79 A E + 0 0 92 -43,-1.6 -1,-0.3 1,-0.1 0, 0.0 -0.828 45.3 177.4-118.8 157.7 -10.9 -2.2 -1.5 80 80 A I - 0 0 49 -2,-0.3 -13,-0.2 -45,-0.2 -45,-0.2 0.014 36.3-175.3-144.6 25.2 -7.5 -2.1 -0.1 81 81 A S S S+ 0 0 47 -47,-0.4 -47,-1.5 1,-0.2 2,-0.1 -0.530 70.0 46.8 -85.8 142.9 -6.3 -5.6 -1.0 82 82 A P S S+ 0 0 59 0, 0.0 -1,-0.2 0, 0.0 -15,-0.2 0.291 80.5 178.8 -67.1 124.4 -3.9 -7.0 -0.4 83 83 A R + 0 0 169 1,-0.1 -16,-2.2 -17,-0.1 2,-0.4 0.803 67.7 35.7 -69.7 -31.1 -4.9 -5.5 2.9 84 84 A V E - E 0 66C 73 -18,-0.2 2,-0.4 2,-0.0 -18,-0.2 -0.982 68.9-164.0-127.6 135.0 -2.0 -7.1 4.7 85 85 A V E - E 0 65C 17 -20,-3.3 -20,-3.3 -2,-0.4 2,-1.0 -0.975 19.3-134.2-120.7 133.3 1.5 -7.6 3.5 86 86 A T E - E 0 64C 63 -2,-0.4 2,-0.4 -22,-0.3 -22,-0.3 -0.739 32.6-178.7 -87.3 101.4 4.0 -9.9 5.1 87 87 A L E - E 0 63C 3 -24,-2.4 -24,-2.8 -2,-1.0 2,-0.9 -0.861 23.0-140.2-107.0 134.5 7.2 -7.9 5.2 88 88 A Q E - E 0 62C 87 -2,-0.4 -61,-1.5 -26,-0.3 2,-0.6 -0.814 15.1-161.1 -95.3 103.1 10.5 -9.2 6.6 89 89 A L E -DE 26 61C 1 -28,-2.5 -28,-3.5 -2,-0.9 2,-0.3 -0.753 12.7-155.7 -82.5 120.0 12.2 -6.5 8.6 90 90 A E E -D 25 0C 40 -65,-2.9 -65,-2.8 -2,-0.6 2,-0.4 -0.707 21.4-103.8-100.6 149.9 15.9 -7.4 9.0 91 91 A H E -D 24 0C 87 -2,-0.3 -67,-0.2 -67,-0.2 -68,-0.1 -0.547 20.7-166.8 -71.0 124.5 18.2 -6.3 11.7 92 92 A H S S+ 0 0 106 -69,-2.0 2,-0.5 -2,-0.4 -1,-0.2 0.532 83.3 63.9 -85.3 -9.0 20.5 -3.6 10.5 93 93 A H S S+ 0 0 139 -70,-0.4 2,-0.3 -3,-0.0 -1,-0.1 -0.976 70.0 162.5-114.2 120.6 22.4 -4.3 13.8 94 94 A H - 0 0 114 -2,-0.5 -2,-0.0 1,-0.2 0, 0.0 -0.771 40.4-138.7-124.9 173.2 23.9 -7.8 14.1 95 95 A H 0 0 191 -2,-0.3 -1,-0.2 1,-0.1 0, 0.0 0.854 360.0 360.0 -92.0 -66.0 26.4 -9.5 16.3 96 96 A H 0 0 248 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.350 360.0 360.0 173.1 360.0 28.1 -11.5 13.5