==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 23-OCT-09 2KPZ . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE NEDD4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.IGLESIAS-BEXIGA,M.MACIAS,R.BONET,F.J.BLANCO,E.S.COBOS,I.LU . 43 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3415.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 44.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 23.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A F 0 0 178 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 1.7 -12.2 -5.6 -0.5 2 13 A L - 0 0 50 4,-0.1 3,-0.1 1,-0.1 4,-0.0 -0.753 360.0 -96.5-108.5 150.6 -9.5 -3.6 -2.2 3 14 A P > - 0 0 60 0, 0.0 3,-2.2 0, 0.0 2,-0.1 -0.227 65.3 -71.3 -49.6 151.1 -9.1 -1.8 -5.5 4 15 A K T 3 S+ 0 0 166 1,-0.3 18,-0.2 16,-0.1 3,-0.1 -0.286 120.5 9.2 -61.0 121.2 -7.3 -3.7 -8.2 5 16 A G T 3 S+ 0 0 27 1,-0.3 16,-3.6 -3,-0.1 2,-0.4 0.581 95.5 134.9 85.2 10.9 -3.6 -4.1 -7.5 6 17 A W E < -A 20 0A 63 -3,-2.2 2,-0.3 14,-0.2 -1,-0.3 -0.772 35.5-163.1 -96.2 140.0 -3.9 -2.6 -4.0 7 18 A E E -A 19 0A 47 12,-2.0 12,-0.6 -2,-0.4 2,-0.5 -0.895 21.3-159.3-122.3 150.3 -2.2 -4.3 -1.0 8 19 A V E +A 18 0A 57 -2,-0.3 2,-0.4 10,-0.2 10,-0.2 -0.857 32.6 163.9-122.7 90.1 -2.4 -4.1 2.7 9 20 A R E -A 17 0A 73 8,-1.4 8,-2.4 -2,-0.5 2,-0.7 -0.910 33.5-136.1-115.0 141.3 0.9 -5.4 3.9 10 21 A H E -A 16 0A 117 -2,-0.4 -2,-0.0 6,-0.3 8,-0.0 -0.835 20.5-143.1 -98.0 113.5 2.4 -5.0 7.4 11 22 A A > - 0 0 11 4,-3.6 3,-3.2 -2,-0.7 4,-0.5 -0.275 34.7 -96.9 -66.9 162.2 6.0 -4.1 7.4 12 23 A P T 3 S+ 0 0 147 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.595 125.3 67.5 -59.3 -11.4 8.3 -5.6 10.1 13 24 A N T 3 S- 0 0 107 2,-0.2 -2,-0.0 0, 0.0 -3,-0.0 0.550 122.2-108.6 -80.5 -11.4 7.8 -2.3 12.0 14 25 A G S < S+ 0 0 28 -3,-3.2 -4,-0.1 1,-0.3 0, 0.0 0.757 79.0 125.6 88.4 28.1 4.2 -3.5 12.4 15 26 A R - 0 0 145 -4,-0.5 -4,-3.6 2,-0.0 2,-0.7 -0.971 56.8-133.0-121.1 133.9 2.7 -1.0 10.0 16 27 A P E -A 10 0A 34 0, 0.0 2,-0.5 0, 0.0 -6,-0.3 -0.754 20.9-167.6 -88.8 112.6 0.4 -1.7 7.0 17 28 A F E -A 9 0A 10 -8,-2.4 -8,-1.4 -2,-0.7 2,-0.7 -0.892 16.9-135.9-100.4 125.2 1.5 0.2 3.9 18 29 A F E -AB 8 27A 14 9,-2.2 9,-2.4 -2,-0.5 2,-0.4 -0.733 21.5-158.5 -89.9 115.2 -1.0 0.1 1.1 19 30 A I E -AB 7 26A 0 -2,-0.7 -12,-2.0 -12,-0.6 2,-0.8 -0.767 14.6-149.3 -97.6 137.7 0.7 -0.5 -2.2 20 31 A D E >> -AB 6 25A 12 5,-3.2 5,-0.7 -2,-0.4 4,-0.5 -0.917 12.1-170.8-100.5 106.2 -0.7 0.3 -5.6 21 32 A H T 45S+ 0 0 17 -16,-3.6 -15,-0.1 -2,-0.8 -1,-0.1 0.431 76.2 61.2 -81.7 1.0 0.8 -2.4 -7.8 22 33 A N T 45S+ 0 0 68 -17,-0.2 -1,-0.2 -18,-0.2 -17,-0.1 0.931 116.0 21.0 -90.1 -60.2 -0.4 -0.6 -10.9 23 34 A T T 45S- 0 0 102 2,-0.1 -2,-0.2 1,-0.0 3,-0.1 0.183 105.2-112.0-101.3 16.0 1.3 2.8 -11.0 24 35 A K T <5S+ 0 0 136 -4,-0.5 2,-0.2 1,-0.2 -3,-0.2 0.693 70.9 145.2 66.2 21.4 4.2 1.7 -8.6 25 36 A T E < -B 20 0A 68 -5,-0.7 -5,-3.2 15,-0.1 2,-0.4 -0.592 32.8-162.1 -97.9 150.2 2.7 4.1 -6.0 26 37 A T E +B 19 0A 42 -7,-0.2 2,-0.3 -2,-0.2 -7,-0.2 -0.990 11.9 169.2-133.2 142.5 2.7 3.6 -2.2 27 38 A T E -B 18 0A 36 -9,-2.4 -9,-2.2 -2,-0.4 10,-0.1 -0.993 34.2-145.2-150.1 150.3 0.6 5.2 0.5 28 39 A W S S+ 0 0 70 -2,-0.3 2,-0.2 -11,-0.2 -9,-0.1 0.550 80.2 87.7 -89.4 -10.7 -0.0 4.6 4.2 29 40 A E S S- 0 0 107 -11,-0.1 -11,-0.1 -12,-0.0 -2,-0.1 -0.546 76.9-123.7 -95.0 159.0 -3.6 5.8 3.9 30 41 A D > - 0 0 7 -2,-0.2 3,-1.3 1,-0.1 4,-0.3 -0.888 10.0-160.6-115.0 118.7 -6.5 3.6 2.9 31 42 A P T 3 S+ 0 0 35 0, 0.0 3,-0.5 0, 0.0 -1,-0.1 0.658 95.8 64.8 -63.1 -17.6 -8.9 4.1 -0.1 32 43 A R T 3 S+ 0 0 131 1,-0.2 -3,-0.0 2,-0.2 -30,-0.0 0.739 90.1 63.5 -77.4 -24.5 -11.3 1.9 1.8 33 44 A L < 0 0 144 -3,-1.3 -1,-0.2 1,-0.0 -4,-0.0 0.584 360.0 360.0 -77.3 -9.8 -11.7 4.4 4.6 34 45 A K 0 0 206 -3,-0.5 -2,-0.2 -4,-0.3 -1,-0.0 0.784 360.0 360.0-102.0 360.0 -13.2 6.8 2.2 35 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 36 112 B Q 0 0 187 0, 0.0 -8,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 105.5 7.7 8.9 5.5 37 113 B I - 0 0 149 -10,-0.1 -10,-0.1 -9,-0.0 0, 0.0 -0.850 360.0-144.1-107.1 125.0 8.0 6.6 2.4 38 114 B P - 0 0 12 0, 0.0 -12,-0.0 0, 0.0 -10,-0.0 -0.722 30.5-108.6 -84.1 128.8 6.2 3.2 2.1 39 115 B P - 0 0 70 0, 0.0 -12,-0.1 0, 0.0 -22,-0.1 -0.339 36.5-121.8 -55.5 127.4 8.2 0.4 0.3 40 116 B P - 0 0 76 0, 0.0 2,-0.3 0, 0.0 -19,-0.1 0.131 32.5 -81.7 -49.7-179.6 6.9 -0.5 -3.2 41 117 B Y + 0 0 43 -21,-0.2 -21,-0.0 1,-0.1 -15,-0.0 -0.638 32.3 177.9 -93.1 139.4 5.8 -3.7 -4.4 42 118 B V S S+ 0 0 125 -2,-0.3 -1,-0.1 1,-0.2 0, 0.0 0.714 74.9 59.7-106.0 -43.8 8.0 -6.5 -5.6 43 119 B E 0 0 92 1,-0.1 -1,-0.2 0, 0.0 -22,-0.0 -0.756 360.0 360.0 -90.0 127.4 5.4 -9.1 -6.3 44 120 B P 0 0 146 0, 0.0 -39,-0.1 0, 0.0 -1,-0.1 -0.386 360.0 360.0 -59.8 360.0 2.7 -8.0 -8.9