==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 23-OCT-09 2KQ0 . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE NEDD4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.IGLESIAS-BEXIGA,M.MACIAS,R.BONET,F.J.BLANCO,E.S.COBOS,I.LU . 44 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3597.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 25.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A F 0 0 202 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 112.6 11.1 -4.9 -0.6 2 13 A L - 0 0 48 4,-0.1 3,-0.2 29,-0.1 4,-0.1 -0.989 360.0 -64.6-154.9 152.8 8.8 -2.5 1.2 3 14 A P > - 0 0 31 0, 0.0 3,-2.3 0, 0.0 2,-0.2 0.057 65.8 -88.4 -35.9 139.9 8.3 -0.7 4.6 4 15 A K T 3 S+ 0 0 208 1,-0.3 3,-0.1 16,-0.0 16,-0.0 -0.349 116.1 23.9 -58.7 117.5 7.7 -2.8 7.7 5 16 A G T 3 S+ 0 0 36 1,-0.4 16,-1.4 -2,-0.2 2,-0.3 0.061 95.2 114.7 114.1 -22.4 4.0 -3.4 8.0 6 17 A W E < -A 20 0A 49 -3,-2.3 -1,-0.4 14,-0.2 2,-0.3 -0.650 50.6-153.0 -89.9 136.7 3.1 -2.8 4.4 7 18 A E E -A 19 0A 54 12,-2.5 12,-2.8 -2,-0.3 2,-0.6 -0.794 9.3-138.5-101.1 144.8 1.7 -5.5 2.3 8 19 A V E +A 18 0A 82 -2,-0.3 2,-0.4 10,-0.2 10,-0.2 -0.932 25.9 176.9-106.9 119.6 2.0 -5.7 -1.5 9 20 A R E -A 17 0A 76 8,-1.7 8,-1.9 -2,-0.6 2,-0.7 -0.982 25.6-134.3-124.0 133.3 -1.1 -6.7 -3.3 10 21 A H E -A 16 0A 139 -2,-0.4 -2,-0.0 6,-0.2 8,-0.0 -0.775 25.6-164.9 -93.0 114.4 -1.5 -6.9 -7.1 11 22 A A E >> -A 15 0A 15 4,-3.1 3,-1.2 -2,-0.7 4,-0.9 -0.522 37.5-104.5 -93.5 163.1 -4.8 -5.3 -8.2 12 23 A P T 34 S+ 0 0 138 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.482 109.3 87.3 -64.3 -0.6 -6.5 -5.7 -11.6 13 24 A N T 34 S- 0 0 82 2,-0.4 -3,-0.0 1,-0.1 -2,-0.0 0.367 112.9-112.7 -75.0 5.7 -5.2 -2.1 -12.2 14 25 A G T <4 S+ 0 0 63 -3,-1.2 -1,-0.1 1,-0.3 -4,-0.0 0.785 88.6 115.2 61.1 27.2 -2.1 -3.8 -13.5 15 26 A R E < -A 11 0A 106 -4,-0.9 -4,-3.1 2,-0.0 2,-0.7 -0.983 68.2-140.3-136.7 132.8 -0.8 -2.2 -10.3 16 27 A P E -A 10 0A 42 0, 0.0 2,-0.4 0, 0.0 -6,-0.2 -0.864 26.5-159.0 -89.6 112.3 0.6 -3.4 -7.0 17 28 A F E -A 9 0A 24 -8,-1.9 -8,-1.7 -2,-0.7 2,-0.4 -0.790 14.6-125.7 -95.5 139.5 -0.9 -1.1 -4.3 18 29 A F E -AB 8 27A 27 9,-2.5 9,-2.4 -2,-0.4 2,-0.4 -0.683 29.2-174.3 -89.7 131.1 0.9 -0.8 -1.0 19 30 A I E -AB 7 26A 1 -12,-2.8 -12,-2.5 -2,-0.4 2,-0.4 -0.891 14.8-159.7-139.6 112.8 -1.2 -1.5 2.1 20 31 A D E > -AB 6 25A 3 5,-1.7 5,-1.8 -2,-0.4 4,-0.5 -0.706 0.8-168.5 -90.0 129.5 -0.3 -1.2 5.8 21 32 A H T 5S+ 0 0 58 -16,-1.4 -1,-0.1 -2,-0.4 -15,-0.1 0.661 81.6 58.5 -89.0 -18.6 -2.5 -3.2 8.2 22 33 A N T 5S+ 0 0 118 -17,-0.3 -1,-0.2 1,-0.2 -16,-0.1 0.700 120.4 24.1 -91.6 -20.1 -1.2 -1.6 11.4 23 34 A T T 5S- 0 0 89 -18,-0.1 -2,-0.2 2,-0.1 -1,-0.2 0.426 105.5-120.4-117.2 -4.0 -2.1 2.0 10.5 24 35 A K T 5 + 0 0 86 -4,-0.5 2,-0.3 1,-0.2 -3,-0.2 1.000 61.6 139.0 58.3 73.6 -4.9 1.2 8.0 25 36 A T E < -B 20 0A 54 -5,-1.8 -5,-1.7 16,-0.1 2,-0.3 -0.993 36.5-159.8-146.5 150.1 -3.5 3.0 4.9 26 37 A T E +B 19 0A 36 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.972 11.7 179.5-131.7 147.9 -3.1 2.4 1.2 27 38 A T E -B 18 0A 27 -9,-2.4 -9,-2.5 -2,-0.3 3,-0.1 -0.982 28.8-159.2-144.1 150.0 -0.7 3.9 -1.3 28 39 A W S S+ 0 0 46 -2,-0.3 2,-0.4 -11,-0.2 -1,-0.1 0.720 87.9 63.2 -95.4 -33.9 0.1 3.7 -5.0 29 40 A E S S- 0 0 78 1,-0.1 5,-0.1 -11,-0.1 -11,-0.1 -0.743 107.9 -92.4 -88.6 140.6 3.5 5.1 -4.6 30 41 A D >> - 0 0 22 -2,-0.4 3,-2.8 1,-0.2 4,-0.7 -0.303 31.9-131.0 -54.5 121.9 6.0 3.2 -2.4 31 42 A P T 34 S+ 0 0 8 0, 0.0 -1,-0.2 0, 0.0 -29,-0.1 0.542 102.8 74.7 -56.1 -10.1 5.6 4.5 1.2 32 43 A R T 34 S+ 0 0 128 1,-0.2 3,-0.2 3,-0.1 -2,-0.1 0.813 99.2 45.1 -68.5 -31.7 9.4 4.8 1.3 33 44 A L T <4 S+ 0 0 134 -3,-2.8 2,-0.4 1,-0.3 -1,-0.2 0.736 122.3 38.9 -80.4 -27.3 9.0 7.9 -0.9 34 45 A K < 0 0 126 -4,-0.7 -1,-0.3 1,-0.1 -5,-0.0 -0.861 360.0 360.0-128.6 97.5 6.1 9.2 1.2 35 46 A I 0 0 207 -2,-0.4 -1,-0.1 -3,-0.2 -2,-0.1 0.810 360.0 360.0-105.8 360.0 6.5 8.7 5.0 36 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 37 112 B T 0 0 153 0, 0.0 -24,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.5 -6.0 5.2 -10.7 38 113 B A - 0 0 77 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.932 360.0-124.3 72.5 97.8 -8.8 5.3 -8.1 39 114 B P - 0 0 100 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.527 21.0-127.7 -75.0 132.3 -7.6 4.7 -4.5 40 115 B P - 0 0 43 0, 0.0 2,-0.2 0, 0.0 -14,-0.1 -0.607 22.9-113.5 -79.4 135.5 -9.3 1.8 -2.6 41 116 B E - 0 0 181 -2,-0.3 2,-0.5 1,-0.1 -16,-0.1 -0.507 40.0-127.7 -65.3 136.5 -10.7 2.5 0.8 42 117 B Y + 0 0 38 -2,-0.2 2,-0.1 -18,-0.2 -16,-0.1 -0.776 52.3 131.6-104.2 126.2 -8.7 0.6 3.3 43 118 B M + 0 0 136 -2,-0.5 2,-0.5 -18,-0.1 -22,-0.1 -0.508 20.3 155.7-163.3 91.5 -9.8 -1.8 6.0 44 119 B E 0 0 74 -24,-0.2 -20,-0.1 1,-0.1 -2,-0.0 -0.953 360.0 360.0-126.0 109.3 -8.0 -5.0 6.1 45 120 B A 0 0 152 -2,-0.5 -1,-0.1 -21,-0.0 -24,-0.0 0.664 360.0 360.0-119.4 360.0 -7.9 -7.1 9.3