==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 28-OCT-09 2KQ6 . COMPND 2 MOLECULE: POLYCYSTIN-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.T.PETRI,A.CELIC,S.D.KENNEDY,B.E.EHRLICH,T.J.BOGGON,M.E.HOD . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6266.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 65.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 37 47.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 134 0, 0.0 3,-0.4 0, 0.0 28,-0.0 0.000 360.0 360.0 360.0 -49.4 -16.6 -4.9 -1.2 2 2 A T + 0 0 143 1,-0.2 28,-0.0 2,-0.1 0, 0.0 0.926 360.0 52.2 -61.5 -46.4 -16.0 -8.5 -0.1 3 3 A V S S- 0 0 134 2,-0.0 3,-0.3 3,-0.0 -1,-0.2 0.743 103.4-144.2 -61.0 -24.7 -13.4 -9.1 -2.9 4 4 A D - 0 0 24 -3,-0.4 2,-1.6 1,-0.2 3,-0.1 0.958 9.5-125.3 55.1 90.8 -11.7 -5.9 -1.5 5 5 A D > + 0 0 80 24,-0.2 3,-1.6 1,-0.2 4,-0.3 -0.481 32.9 178.2 -68.6 89.6 -10.3 -4.2 -4.6 6 6 A I T >> + 0 0 35 -2,-1.6 4,-1.7 -3,-0.3 3,-1.2 0.728 66.6 87.4 -64.2 -22.0 -6.6 -3.9 -3.4 7 7 A S H 3> S+ 0 0 65 1,-0.3 4,-1.9 2,-0.2 -1,-0.3 0.737 79.6 64.4 -50.5 -23.0 -5.9 -2.3 -6.8 8 8 A E H <> S+ 0 0 44 -3,-1.6 4,-1.6 2,-0.2 -1,-0.3 0.933 101.9 45.7 -67.5 -46.7 -6.8 1.0 -5.0 9 9 A S H <4 S+ 0 0 6 -3,-1.2 -2,-0.2 -4,-0.3 -1,-0.2 0.900 113.7 49.6 -62.4 -42.6 -3.8 0.7 -2.6 10 10 A L H < S+ 0 0 27 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.864 105.0 58.3 -65.2 -37.4 -1.5 -0.2 -5.5 11 11 A R H < S+ 0 0 200 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.915 92.0 83.8 -59.3 -44.0 -2.8 2.8 -7.5 12 12 A Q < + 0 0 60 -4,-1.6 5,-0.1 1,-0.1 3,-0.0 -0.185 43.9 106.1 -58.8 152.5 -1.7 5.2 -4.7 13 13 A G + 0 0 16 3,-0.2 2,-3.5 44,-0.0 -1,-0.1 0.408 26.9 158.2 144.6 19.0 2.0 6.3 -4.8 14 14 A G S S- 0 0 72 2,-0.2 2,-2.7 1,-0.2 -2,-0.1 -0.273 71.7 -95.0 -67.1 59.4 1.8 9.9 -6.0 15 15 A G S S+ 0 0 33 -2,-3.5 2,-0.8 37,-0.1 36,-0.2 -0.359 117.4 65.9 63.6 -73.4 5.2 10.7 -4.4 16 16 A K + 0 0 172 -2,-2.7 2,-0.3 34,-0.1 -2,-0.2 -0.698 69.4 142.2 -82.6 107.6 3.7 12.0 -1.2 17 17 A L + 0 0 9 -2,-0.8 34,-1.4 -4,-0.1 2,-0.3 -0.983 16.6 165.6-150.5 136.5 1.9 9.2 0.6 18 18 A N >> - 0 0 36 -2,-0.3 3,-1.7 32,-0.2 4,-1.5 -0.958 56.4 -84.8-149.4 156.5 1.6 8.2 4.2 19 19 A F H 3> S+ 0 0 89 -2,-0.3 4,-2.0 1,-0.3 5,-0.2 0.709 128.0 52.5 -31.3 -36.2 -0.6 5.8 6.3 20 20 A D H 3> S+ 0 0 48 2,-0.2 4,-2.0 3,-0.2 5,-0.3 0.899 106.2 50.3 -71.7 -45.9 -3.2 8.6 6.5 21 21 A E H <> S+ 0 0 83 -3,-1.7 4,-0.8 1,-0.2 -2,-0.2 0.930 121.7 32.6 -61.5 -45.9 -3.4 9.3 2.7 22 22 A L H X S+ 0 0 7 -4,-1.5 4,-2.8 2,-0.2 5,-0.2 0.901 119.5 50.5 -76.5 -46.9 -4.0 5.6 1.8 23 23 A R H X S+ 0 0 108 -4,-2.0 4,-2.6 -5,-0.3 -3,-0.2 0.937 109.2 50.4 -60.4 -49.4 -5.9 4.5 5.0 24 24 A Q H X S+ 0 0 90 -4,-2.0 4,-0.8 -5,-0.2 -1,-0.2 0.858 114.9 44.8 -59.2 -34.6 -8.5 7.3 4.8 25 25 A D H >X S+ 0 0 74 -4,-0.8 4,-0.9 -5,-0.3 3,-0.6 0.928 113.0 49.7 -71.5 -47.8 -9.1 6.5 1.2 26 26 A L H 3<>S+ 0 0 6 -4,-2.8 5,-1.7 1,-0.2 3,-0.2 0.813 99.2 66.9 -63.8 -31.8 -9.3 2.7 1.8 27 27 A K H ><5S+ 0 0 147 -4,-2.6 3,-1.4 1,-0.2 -1,-0.2 0.916 100.3 50.0 -55.1 -43.9 -11.7 3.2 4.7 28 28 A G H <<5S+ 0 0 71 -4,-0.8 -1,-0.2 -3,-0.6 -2,-0.2 0.833 99.7 65.1 -63.2 -34.8 -14.3 4.4 2.1 29 29 A K T 3<5S- 0 0 99 -4,-0.9 -1,-0.3 -3,-0.2 -24,-0.2 0.450 117.1-114.9 -70.7 2.5 -13.6 1.3 -0.1 30 30 A G T < 5 + 0 0 35 -3,-1.4 -3,-0.2 -4,-0.2 -2,-0.1 0.693 59.3 164.4 72.2 19.7 -15.1 -0.7 2.8 31 31 A H < - 0 0 22 -5,-1.7 2,-0.2 1,-0.1 -1,-0.2 -0.168 37.6-106.0 -66.8 162.4 -11.7 -2.4 3.4 32 32 A T > - 0 0 73 1,-0.1 4,-2.6 -28,-0.0 5,-0.2 -0.546 17.9-120.3 -91.0 158.5 -11.0 -4.2 6.7 33 33 A D H > S+ 0 0 124 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.933 113.9 51.5 -63.3 -44.9 -8.8 -3.0 9.6 34 34 A A H > S+ 0 0 65 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.913 113.9 43.8 -58.2 -46.1 -6.5 -6.0 9.3 35 35 A E H > S+ 0 0 82 2,-0.2 4,-3.2 1,-0.2 5,-0.2 0.930 113.1 50.6 -65.6 -46.2 -6.0 -5.5 5.5 36 36 A I H X S+ 0 0 13 -4,-2.6 4,-2.1 2,-0.2 5,-0.3 0.934 113.3 46.6 -56.8 -48.6 -5.6 -1.8 5.8 37 37 A E H X S+ 0 0 116 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.925 115.0 45.7 -59.6 -48.6 -2.9 -2.3 8.6 38 38 A A H X S+ 0 0 34 -4,-2.5 4,-2.4 -5,-0.2 -1,-0.2 0.881 111.2 52.5 -62.6 -44.8 -1.1 -5.0 6.6 39 39 A I H X S+ 0 0 16 -4,-3.2 4,-1.9 2,-0.2 5,-0.2 0.948 116.7 36.5 -62.3 -47.9 -1.1 -3.1 3.3 40 40 A F H X S+ 0 0 54 -4,-2.1 4,-3.6 -5,-0.2 -1,-0.2 0.902 115.7 55.7 -67.7 -43.8 0.4 0.1 4.7 41 41 A T H < S+ 0 0 69 -4,-2.3 -2,-0.2 -5,-0.3 -1,-0.2 0.894 108.4 47.0 -58.0 -45.0 2.6 -1.7 7.1 42 42 A K H < S+ 0 0 122 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.938 120.4 36.5 -64.8 -50.3 4.2 -3.8 4.3 43 43 A Y H < S+ 0 0 20 -4,-1.9 2,-0.8 -5,-0.2 -2,-0.2 0.870 119.2 54.8 -72.1 -33.0 4.8 -0.8 1.9 44 44 A D < - 0 0 6 -4,-3.6 -1,-0.2 -5,-0.2 7,-0.0 -0.867 66.1-176.2-103.2 100.5 5.7 1.5 4.9 45 45 A Q S S+ 0 0 151 -2,-0.8 -1,-0.2 1,-0.2 -2,-0.1 0.968 89.9 6.5 -63.2 -52.3 8.5 -0.2 6.9 46 46 A D S S- 0 0 130 3,-0.0 -1,-0.2 0, 0.0 -5,-0.1 0.427 87.9-143.5-106.9 -2.8 8.6 2.5 9.8 47 47 A G S S+ 0 0 22 -7,-0.2 3,-0.1 -6,-0.1 -3,-0.1 0.824 72.3 108.8 39.9 42.8 5.5 4.5 8.5 48 48 A D S S+ 0 0 134 2,-0.1 2,-0.2 1,-0.1 -1,-0.1 0.565 72.4 36.3-115.6 -23.4 7.3 7.7 9.6 49 49 A Q S S- 0 0 80 1,-0.1 2,-0.1 -32,-0.0 -2,-0.1 -0.751 92.2 -79.7-127.9 174.5 8.1 9.3 6.2 50 50 A E - 0 0 113 -2,-0.2 2,-0.6 -32,-0.1 -32,-0.2 -0.431 46.5-113.4 -76.2 147.3 6.7 9.6 2.7 51 51 A L - 0 0 5 -34,-1.4 -1,-0.1 -36,-0.2 -7,-0.1 -0.780 33.1-151.6 -91.7 118.9 7.0 6.7 0.2 52 52 A T > - 0 0 60 -2,-0.6 4,-1.5 -36,-0.1 5,-0.2 -0.073 26.3 -99.5 -79.8-178.5 9.2 7.4 -2.7 53 53 A E H > S+ 0 0 111 3,-0.2 4,-3.9 2,-0.2 5,-0.4 0.942 115.1 47.0 -69.4 -58.5 9.1 6.0 -6.1 54 54 A H H > S+ 0 0 149 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.945 117.5 42.4 -56.9 -50.7 11.8 3.3 -6.0 55 55 A E H > S+ 0 0 109 2,-0.2 4,-1.9 1,-0.2 5,-0.2 0.955 121.1 41.9 -60.2 -50.8 10.6 1.8 -2.7 56 56 A H H X S+ 0 0 12 -4,-1.5 4,-2.1 1,-0.2 -2,-0.2 0.943 117.9 45.0 -62.7 -50.5 6.9 2.0 -3.6 57 57 A Q H X S+ 0 0 62 -4,-3.9 4,-2.3 2,-0.2 5,-0.2 0.883 111.6 54.0 -62.5 -40.5 7.3 0.8 -7.3 58 58 A Q H X S+ 0 0 121 -4,-2.6 4,-2.2 -5,-0.4 -1,-0.2 0.961 114.0 39.2 -59.4 -54.6 9.7 -2.1 -6.2 59 59 A M H X S+ 0 0 55 -4,-1.9 4,-3.9 -5,-0.2 5,-0.3 0.862 112.3 58.7 -62.1 -38.9 7.2 -3.6 -3.7 60 60 A R H X S+ 0 0 71 -4,-2.1 4,-2.9 -5,-0.2 5,-0.2 0.940 109.1 42.8 -58.8 -48.2 4.3 -2.9 -6.0 61 61 A D H X S+ 0 0 64 -4,-2.3 4,-2.5 2,-0.2 -1,-0.2 0.913 116.8 48.5 -62.8 -43.3 5.8 -5.1 -8.7 62 62 A D H X S+ 0 0 61 -4,-2.2 4,-2.2 -5,-0.2 -2,-0.2 0.937 114.3 45.0 -63.2 -47.0 6.8 -7.7 -6.2 63 63 A L H X S+ 0 0 32 -4,-3.9 4,-3.2 2,-0.2 -2,-0.2 0.934 113.9 49.0 -64.3 -46.1 3.3 -7.8 -4.5 64 64 A E H X S+ 0 0 73 -4,-2.9 4,-1.9 -5,-0.3 -2,-0.2 0.942 113.1 47.4 -58.3 -47.9 1.5 -7.8 -7.9 65 65 A K H X S+ 0 0 116 -4,-2.5 4,-2.0 -5,-0.2 -1,-0.2 0.871 115.0 46.3 -60.9 -38.3 3.7 -10.7 -9.1 66 66 A E H X S+ 0 0 115 -4,-2.2 4,-3.5 2,-0.2 5,-0.3 0.900 107.2 57.4 -70.8 -43.1 3.1 -12.6 -5.8 67 67 A R H X S+ 0 0 92 -4,-3.2 4,-1.8 2,-0.2 -2,-0.2 0.913 112.6 41.1 -55.0 -45.1 -0.7 -12.0 -5.9 68 68 A E H X S+ 0 0 81 -4,-1.9 4,-3.3 2,-0.2 3,-0.3 0.989 118.5 43.4 -65.7 -62.4 -0.9 -13.7 -9.3 69 69 A D H < S+ 0 0 108 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.880 113.8 54.0 -51.6 -42.5 1.5 -16.6 -8.7 70 70 A L H < S+ 0 0 131 -4,-3.5 -1,-0.2 -5,-0.2 -2,-0.2 0.907 117.8 35.4 -59.3 -43.8 -0.2 -17.0 -5.2 71 71 A D H < S+ 0 0 97 -4,-1.8 2,-1.2 -3,-0.3 -2,-0.2 0.982 105.7 70.5 -72.8 -62.7 -3.6 -17.3 -6.8 72 72 A L S < S- 0 0 123 -4,-3.3 -1,-0.2 -5,-0.2 -4,-0.0 -0.399 85.6-147.0 -60.6 92.3 -2.6 -19.2 -10.0 73 73 A D - 0 0 102 -2,-1.2 3,-0.1 1,-0.1 -2,-0.1 -0.180 18.7-117.0 -60.3 155.9 -1.8 -22.5 -8.4 74 74 A H S S- 0 0 188 1,-0.2 2,-0.3 4,-0.1 -1,-0.1 0.842 91.3 -13.8 -63.7 -34.1 1.0 -24.6 -10.0 75 75 A S S S- 0 0 76 2,-0.4 -1,-0.2 1,-0.1 -2,-0.0 -0.969 71.7 -97.6-160.7 167.6 -1.6 -27.3 -10.8 76 76 A S S S+ 0 0 120 -2,-0.3 -1,-0.1 -3,-0.1 -2,-0.0 0.842 101.3 82.7 -59.5 -37.0 -5.1 -28.5 -10.0 77 77 A L 0 0 134 1,-0.1 -2,-0.4 -3,-0.0 -3,-0.1 -0.333 360.0 360.0 -67.6 152.8 -3.7 -31.0 -7.5 78 78 A P 0 0 205 0, 0.0 -4,-0.1 0, 0.0 -1,-0.1 0.775 360.0 360.0 -41.9 360.0 -2.9 -29.7 -3.9