==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 03-DEC-09 2KR4 . COMPND 2 MOLECULE: UBIQUITIN CONJUGATION FACTOR E4 B; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.NORDQUIST,S.SOSS,W.CHAZIN . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6503.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 12.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 28.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 178 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.3 -3.4 -3.6 -1.1 2 2 A G + 0 0 83 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.199 360.0 140.6 -96.3 9.3 -2.3 -0.3 -2.8 3 3 A S + 0 0 116 1,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.206 20.6 161.4 -64.3 147.8 1.5 -0.7 -2.2 4 4 A A - 0 0 98 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.947 22.3-140.3-159.7 168.9 4.1 0.3 -4.8 5 5 A E - 0 0 159 -2,-0.3 2,-0.2 0, 0.0 3,-0.0 -0.931 28.6 -94.6-138.8 158.6 7.8 1.2 -5.5 6 6 A I - 0 0 52 -2,-0.3 2,-0.5 71,-0.1 75,-0.1 -0.479 46.8-106.6 -68.9 142.2 10.1 3.6 -7.4 7 7 A D - 0 0 126 -2,-0.2 3,-0.4 1,-0.1 -1,-0.1 -0.634 24.8-158.1 -74.6 121.7 11.4 2.4 -10.8 8 8 A Y > + 0 0 39 -2,-0.5 3,-2.0 1,-0.2 -1,-0.1 -0.001 52.5 124.6 -95.4 28.5 15.2 1.5 -10.5 9 9 A S T 3 + 0 0 103 1,-0.3 -1,-0.2 13,-0.0 -2,-0.0 0.689 68.1 66.7 -59.7 -18.9 16.0 1.8 -14.3 10 10 A D T 3 S+ 0 0 104 -3,-0.4 -1,-0.3 2,-0.0 -2,-0.1 0.471 76.4 120.6 -79.0 -6.0 18.7 4.4 -13.2 11 11 A A < - 0 0 5 -3,-2.0 5,-0.0 1,-0.1 62,-0.0 -0.342 68.4-110.2 -64.5 141.9 20.7 1.6 -11.4 12 12 A P >> - 0 0 46 0, 0.0 3,-1.8 0, 0.0 4,-1.1 -0.268 26.7-109.0 -70.6 157.7 24.4 1.0 -12.6 13 13 A D T 34 S+ 0 0 124 1,-0.3 -2,-0.1 2,-0.2 0, 0.0 0.713 118.1 62.4 -62.7 -21.4 25.3 -2.3 -14.4 14 14 A E T 34 S+ 0 0 133 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.641 107.1 44.0 -77.8 -17.1 27.2 -3.5 -11.2 15 15 A F T <4 S+ 0 0 16 -3,-1.8 9,-2.0 2,-0.1 10,-0.5 0.614 103.9 81.7 -95.1 -21.0 23.9 -3.5 -9.2 16 16 A R B < S-A 23 0A 66 -4,-1.1 7,-0.3 7,-0.3 21,-0.0 -0.652 75.7-127.6 -90.9 144.1 21.9 -5.1 -12.0 17 17 A D > - 0 0 8 5,-2.7 4,-0.5 -2,-0.3 5,-0.2 -0.511 12.5-136.2 -78.4 153.1 21.6 -8.9 -12.9 18 18 A P T 4 S+ 0 0 82 0, 0.0 -1,-0.1 0, 0.0 18,-0.0 0.814 97.5 45.0 -82.6 -32.3 22.3 -10.1 -16.5 19 19 A L T 4 S+ 0 0 109 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 0.950 124.5 29.0 -79.0 -52.0 19.4 -12.7 -16.8 20 20 A M T 4 S- 0 0 125 2,-0.1 -1,-0.1 0, 0.0 3,-0.1 0.560 94.7-137.5 -89.0 -11.8 16.5 -10.6 -15.4 21 21 A D < + 0 0 118 -4,-0.5 2,-0.2 1,-0.2 -5,-0.1 0.821 67.1 98.8 58.6 37.1 17.9 -7.2 -16.4 22 22 A T S S- 0 0 73 -5,-0.2 -5,-2.7 -7,-0.1 2,-0.4 -0.858 87.7 -63.7-142.8 172.0 17.0 -5.6 -13.0 23 23 A L B -A 16 0A 14 -7,-0.3 -7,-0.3 -2,-0.2 3,-0.1 -0.509 40.0-156.7 -65.1 118.4 18.4 -4.6 -9.5 24 24 A M - 0 0 19 -9,-2.0 2,-1.5 -2,-0.4 15,-0.2 0.872 9.9-171.4 -66.7 -39.6 19.5 -7.9 -7.9 25 25 A T S S+ 0 0 52 -10,-0.5 -1,-0.2 1,-0.1 49,-0.1 -0.167 74.1 61.9 71.7 -35.5 19.3 -6.5 -4.3 26 26 A D S S- 0 0 43 -2,-1.5 12,-2.0 -3,-0.1 2,-0.3 -0.808 73.2-172.0-116.6 83.7 20.9 -9.8 -3.0 27 27 A P E -B 37 0B 1 0, 0.0 39,-2.7 0, 0.0 2,-0.4 -0.632 5.3-171.6 -72.8 135.4 24.4 -10.1 -4.6 28 28 A V E -BC 36 65B 2 8,-3.1 8,-2.7 -2,-0.3 2,-0.3 -0.998 15.4-134.1-136.4 127.9 26.1 -13.5 -3.8 29 29 A R E -BC 35 64B 128 35,-3.0 35,-1.6 -2,-0.4 6,-0.2 -0.638 15.7-147.4 -89.9 137.5 29.7 -14.5 -4.6 30 30 A L > - 0 0 6 4,-3.0 3,-1.9 -2,-0.3 33,-0.1 -0.511 31.6-103.6 -95.7 164.9 30.6 -17.8 -6.3 31 31 A P T 3 S+ 0 0 75 0, 0.0 32,-0.1 0, 0.0 -1,-0.1 0.740 121.6 63.6 -65.5 -21.9 33.9 -20.0 -5.8 32 32 A S T 3 S- 0 0 54 2,-0.1 3,-0.1 1,-0.0 -3,-0.0 0.539 120.2-111.9 -69.8 -11.0 35.1 -18.6 -9.2 33 33 A G S < S+ 0 0 27 -3,-1.9 2,-0.1 1,-0.3 -1,-0.0 0.234 77.2 132.3 89.2 -8.6 35.1 -15.1 -7.6 34 34 A T - 0 0 70 -5,-0.1 -4,-3.0 1,-0.0 2,-0.4 -0.412 52.4-134.7 -68.2 145.9 32.1 -14.0 -9.9 35 35 A V E +B 29 0B 54 -6,-0.2 2,-0.3 -2,-0.1 -6,-0.2 -0.903 30.9 167.1-105.1 135.1 29.1 -12.2 -8.3 36 36 A M E -B 28 0B 14 -8,-2.7 -8,-3.1 -2,-0.4 2,-0.3 -0.883 40.4 -86.2-136.0 165.4 25.5 -13.2 -9.2 37 37 A D E > -B 27 0B 11 -2,-0.3 4,-2.2 -10,-0.2 5,-0.2 -0.591 33.2-129.0 -72.1 137.7 21.9 -12.7 -8.0 38 38 A R H > S+ 0 0 93 -12,-2.0 4,-1.9 -2,-0.3 5,-0.2 0.872 106.5 46.3 -52.3 -48.8 20.7 -15.1 -5.2 39 39 A S H > S+ 0 0 74 -15,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.891 111.5 50.5 -70.8 -39.5 17.4 -16.1 -7.1 40 40 A I H > S+ 0 0 17 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.919 111.6 47.7 -64.8 -44.0 19.1 -16.7 -10.5 41 41 A I H X S+ 0 0 1 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.953 115.0 44.4 -65.9 -44.6 21.9 -19.0 -9.1 42 42 A L H X S+ 0 0 88 -4,-1.9 4,-1.0 1,-0.2 -1,-0.2 0.834 111.5 55.0 -69.3 -28.7 19.3 -21.1 -7.0 43 43 A R H X S+ 0 0 169 -4,-1.9 4,-0.6 2,-0.2 -1,-0.2 0.871 109.9 46.2 -68.7 -37.1 17.0 -21.2 -10.1 44 44 A H H >X S+ 0 0 37 -4,-2.0 4,-2.5 1,-0.2 3,-1.2 0.892 103.4 62.8 -72.6 -36.2 19.9 -22.6 -12.2 45 45 A L H 3< S+ 0 0 35 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.819 97.5 58.9 -54.9 -34.7 20.8 -25.2 -9.5 46 46 A L H 3< S+ 0 0 138 -4,-1.0 -1,-0.3 1,-0.2 -2,-0.2 0.803 110.7 41.5 -63.8 -31.8 17.2 -26.7 -10.0 47 47 A N H << S- 0 0 119 -3,-1.2 -2,-0.2 -4,-0.6 -1,-0.2 0.900 138.4 -21.1 -81.5 -44.6 18.1 -27.4 -13.7 48 48 A S < - 0 0 19 -4,-2.5 2,-2.5 2,-0.2 -1,-0.3 -0.958 66.1-103.4-163.1 151.5 21.8 -28.6 -13.0 49 49 A P S S+ 0 0 71 0, 0.0 9,-2.2 0, 0.0 2,-0.3 -0.334 90.0 92.6 -77.0 59.4 24.4 -28.3 -10.1 50 50 A T B S-D 57 0C 13 -2,-2.5 7,-0.2 7,-0.3 -2,-0.2 -0.942 84.4 -75.5-149.6 163.7 26.3 -25.7 -12.2 51 51 A D >> - 0 0 12 5,-2.3 4,-1.6 -2,-0.3 3,-0.8 -0.409 38.2-131.4 -64.1 137.8 27.0 -22.0 -13.1 52 52 A P T 34 S+ 0 0 26 0, 0.0 -1,-0.1 0, 0.0 -11,-0.0 0.640 102.0 33.8 -70.5 -17.8 24.2 -20.3 -15.3 53 53 A F T 34 S+ 0 0 114 3,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.249 136.5 16.2-122.6 7.9 26.7 -18.7 -17.9 54 54 A N T <4 S- 0 0 114 -3,-0.8 0, 0.0 2,-0.1 0, 0.0 0.426 85.4-133.2-154.0 -27.4 29.6 -21.3 -18.0 55 55 A R < + 0 0 148 -4,-1.6 2,-0.2 1,-0.2 3,-0.1 0.688 49.0 148.8 61.3 28.9 28.3 -24.6 -16.5 56 56 A Q - 0 0 83 1,-0.1 -5,-2.3 -6,-0.0 -1,-0.2 -0.519 63.2 -76.0 -67.1 156.1 31.3 -25.4 -14.2 57 57 A M B +D 50 0C 123 -7,-0.2 -7,-0.3 -2,-0.2 2,-0.3 -0.246 58.3 174.0 -60.9 143.4 30.2 -27.3 -11.0 58 58 A L - 0 0 1 -9,-2.2 2,-0.3 -3,-0.1 -28,-0.0 -0.979 11.0-176.2-155.5 136.7 28.5 -25.2 -8.2 59 59 A T > - 0 0 64 -2,-0.3 3,-2.0 1,-0.0 4,-0.3 -0.950 39.7-112.6-133.3 152.6 26.8 -26.1 -4.8 60 60 A E G > S+ 0 0 150 -2,-0.3 3,-1.1 1,-0.3 -1,-0.0 0.777 114.9 63.9 -56.9 -29.1 24.9 -23.9 -2.3 61 61 A S G 3 S+ 0 0 108 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.633 96.6 58.4 -70.0 -14.8 27.8 -24.5 0.3 62 62 A M G < S+ 0 0 86 -3,-2.0 -1,-0.2 2,-0.0 2,-0.2 0.500 89.5 96.2 -90.8 -10.1 30.2 -22.6 -2.1 63 63 A L < - 0 0 43 -3,-1.1 -33,-0.2 -4,-0.3 -35,-0.0 -0.529 47.1-178.1 -86.4 150.9 28.1 -19.4 -2.1 64 64 A E E -C 29 0B 135 -35,-1.6 -35,-3.0 -2,-0.2 -3,-0.0 -0.904 28.6-119.9-149.5 118.6 28.6 -16.2 0.1 65 65 A P E -C 28 0B 67 0, 0.0 -37,-0.3 0, 0.0 -39,-0.0 -0.276 28.8-123.5 -56.8 139.8 26.4 -13.0 0.2 66 66 A V > - 0 0 17 -39,-2.7 4,-1.5 1,-0.2 3,-0.1 -0.791 25.6-176.7 -91.8 115.6 28.3 -9.8 -0.7 67 67 A P H > S+ 0 0 90 0, 0.0 4,-2.7 0, 0.0 5,-0.3 0.892 78.1 60.9 -78.6 -40.5 28.1 -7.0 2.0 68 68 A E H 4 S+ 0 0 158 1,-0.2 4,-0.3 2,-0.2 -2,-0.0 0.706 114.5 36.4 -67.4 -20.0 30.0 -4.2 0.2 69 69 A L H > S+ 0 0 30 2,-0.1 4,-2.8 3,-0.1 -1,-0.2 0.848 115.8 51.8 -91.4 -45.7 27.4 -4.2 -2.7 70 70 A K H X S+ 0 0 81 -4,-1.5 4,-2.1 1,-0.2 5,-0.2 0.904 111.0 48.2 -61.6 -40.1 24.2 -4.9 -0.6 71 71 A E H X S+ 0 0 124 -4,-2.7 4,-1.0 2,-0.2 -1,-0.2 0.815 114.5 46.8 -68.9 -31.7 25.0 -2.1 1.9 72 72 A Q H > S+ 0 0 120 -5,-0.3 4,-2.4 -4,-0.3 -2,-0.2 0.893 110.6 52.7 -73.5 -41.6 25.6 0.3 -1.1 73 73 A I H X S+ 0 0 1 -4,-2.8 4,-2.8 2,-0.2 5,-0.2 0.921 109.1 48.0 -59.4 -48.5 22.4 -0.9 -2.9 74 74 A Q H X S+ 0 0 100 -4,-2.1 4,-1.2 1,-0.2 -1,-0.2 0.842 113.0 48.7 -67.0 -32.2 20.1 -0.2 0.1 75 75 A A H X S+ 0 0 39 -4,-1.0 4,-1.4 -5,-0.2 -2,-0.2 0.902 112.9 48.2 -69.0 -42.1 21.7 3.3 0.6 76 76 A W H X S+ 0 0 43 -4,-2.4 4,-1.7 1,-0.2 3,-0.3 0.947 109.1 51.8 -64.9 -47.9 21.2 4.1 -3.2 77 77 A M H X S+ 0 0 29 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.824 104.4 59.0 -58.2 -34.3 17.5 2.9 -3.2 78 78 A R H X S+ 0 0 188 -4,-1.2 4,-2.6 -5,-0.2 -1,-0.2 0.935 105.7 48.0 -60.2 -44.9 16.9 5.2 -0.2 79 79 A E H X S+ 0 0 132 -4,-1.4 4,-0.8 -3,-0.3 -2,-0.2 0.866 109.2 53.0 -65.6 -36.8 18.0 8.3 -2.3 80 80 A K H < S+ 0 0 57 -4,-1.7 -1,-0.2 2,-0.2 -2,-0.2 0.858 114.3 43.1 -65.9 -34.5 15.8 7.2 -5.2 81 81 A Q H >< S+ 0 0 93 -4,-1.7 3,-1.6 -5,-0.2 -2,-0.2 0.894 109.8 54.5 -76.9 -42.9 12.8 7.1 -2.8 82 82 A S H 3< S+ 0 0 77 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.595 93.7 72.5 -72.4 -8.9 13.5 10.3 -0.9 83 83 A S T 3< S+ 0 0 95 -4,-0.8 2,-0.3 -5,-0.2 -1,-0.3 0.633 87.2 81.1 -73.7 -16.1 13.6 12.2 -4.3 84 84 A D < 0 0 112 -3,-1.6 -78,-0.0 -4,-0.1 -3,-0.0 -0.732 360.0 360.0 -95.8 143.4 9.7 11.9 -4.5 85 85 A H 0 0 236 -2,-0.3 -3,-0.0 0, 0.0 -2,-0.0 -0.992 360.0 360.0-138.5 360.0 7.1 14.1 -2.6