==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 16-DEC-09 2KRC . COMPND 2 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT DELTA; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; . AUTHOR V.MOTACKOVA,H.SANDEROVA,L.ZIDEK,J.NOVACEK,P.PADRTA, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6090.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 59.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A G >> 0 0 53 0, 0.0 4,-2.3 0, 0.0 2,-0.9 0.000 360.0 360.0 360.0 124.4 -1.8 10.3 8.1 2 3 A I T 34 - 0 0 39 1,-0.2 4,-0.0 2,-0.2 16,-0.0 -0.476 360.0 -16.2 63.7 -96.3 0.4 7.3 8.1 3 4 A K T 34 S- 0 0 103 -2,-0.9 -1,-0.2 3,-0.1 3,-0.0 0.878 131.3 -35.6-100.0 -53.9 3.9 8.8 8.2 4 5 A Q T <4 S+ 0 0 133 -3,-0.5 2,-0.6 2,-0.1 -2,-0.2 0.088 97.9 120.4-161.2 21.6 3.6 12.5 7.3 5 6 A Y < - 0 0 35 -4,-2.3 2,-0.1 4,-0.0 0, 0.0 -0.852 46.2-152.3-105.8 125.3 0.9 12.6 4.7 6 7 A S >> - 0 0 73 -2,-0.6 4,-1.9 1,-0.1 3,-0.6 -0.438 38.9 -91.4 -87.9 170.9 -2.2 14.6 5.3 7 8 A Q H 3> S+ 0 0 78 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.838 123.3 54.5 -55.0 -38.8 -5.5 13.7 3.7 8 9 A E H 3> S+ 0 0 112 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.897 109.6 47.6 -65.9 -36.0 -5.0 15.9 0.6 9 10 A E H <4 S+ 0 0 81 -3,-0.6 4,-0.4 2,-0.2 -1,-0.2 0.837 114.1 48.0 -72.6 -32.1 -1.7 14.2 -0.2 10 11 A L H >< S+ 0 0 3 -4,-1.9 3,-2.0 1,-0.2 -2,-0.2 0.967 107.1 54.4 -71.1 -50.5 -3.2 10.8 0.3 11 12 A K H 3< S+ 0 0 110 -4,-2.8 -1,-0.2 1,-0.3 -2,-0.2 0.640 106.3 54.5 -59.8 -14.8 -6.3 11.4 -1.8 12 13 A E T 3< S+ 0 0 152 -4,-0.7 -1,-0.3 -5,-0.2 2,-0.2 0.596 96.5 81.8 -97.9 -10.1 -4.1 12.4 -4.8 13 14 A M S < S- 0 0 35 -3,-2.0 2,-0.1 -4,-0.4 -3,-0.0 -0.522 91.4 -93.3 -96.8 159.7 -2.1 9.3 -4.8 14 15 A A >> - 0 0 40 -2,-0.2 4,-1.8 1,-0.1 3,-1.1 -0.433 37.2-117.0 -65.3 145.2 -2.8 6.0 -6.3 15 16 A L H 3> S+ 0 0 25 1,-0.3 4,-2.6 2,-0.2 -1,-0.1 0.815 117.4 57.4 -57.0 -29.4 -4.4 3.6 -3.7 16 17 A V H 3> S+ 0 0 4 2,-0.2 4,-2.0 1,-0.2 -1,-0.3 0.864 102.9 52.4 -68.4 -34.3 -1.3 1.4 -4.1 17 18 A E H <> S+ 0 0 41 -3,-1.1 4,-1.6 2,-0.2 -2,-0.2 0.896 111.9 46.5 -71.1 -36.5 1.0 4.3 -3.1 18 19 A I H X S+ 0 0 4 -4,-1.8 4,-3.1 1,-0.2 5,-0.3 0.949 109.7 55.4 -63.1 -49.7 -1.2 4.8 0.0 19 20 A A H X S+ 0 0 0 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.822 104.8 52.8 -56.0 -35.4 -1.0 1.0 0.5 20 21 A H H X S+ 0 0 0 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.945 113.3 42.2 -65.1 -46.9 2.8 1.1 0.5 21 22 A E H X S+ 0 0 2 -4,-1.6 4,-2.0 2,-0.2 5,-0.2 0.904 112.6 53.7 -68.8 -39.7 2.9 3.7 3.2 22 23 A L H X S+ 0 0 3 -4,-3.1 4,-2.3 1,-0.2 -1,-0.2 0.903 114.2 42.9 -60.3 -39.9 0.2 2.1 5.2 23 24 A F H X S+ 0 0 0 -4,-2.0 4,-3.4 -5,-0.3 5,-0.3 0.815 110.2 55.0 -76.2 -30.2 2.1 -1.1 5.1 24 25 A E H < S+ 0 0 14 -4,-2.1 -2,-0.2 2,-0.2 -1,-0.2 0.784 113.7 43.7 -74.1 -23.5 5.4 0.7 5.8 25 26 A E H < S+ 0 0 97 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.883 119.5 42.7 -81.6 -41.7 3.7 2.1 8.9 26 27 A H H < S- 0 0 40 -4,-2.3 -2,-0.2 -5,-0.2 -3,-0.2 0.958 76.5-167.3 -71.1 -55.4 2.2 -1.3 9.8 27 28 A K < + 0 0 77 -4,-3.4 -3,-0.1 1,-0.3 -4,-0.1 0.735 59.4 95.2 63.8 28.9 5.1 -3.6 9.1 28 29 A K S S- 0 0 96 -5,-0.3 -1,-0.3 0, 0.0 2,-0.3 -0.921 82.6-100.4-139.9 158.9 2.7 -6.5 9.3 29 30 A P - 0 0 60 0, 0.0 47,-0.2 0, 0.0 45,-0.1 -0.638 36.1-164.6 -83.8 139.7 0.7 -8.6 6.7 30 31 A V E -A 75 0A 3 45,-2.5 45,-3.2 -2,-0.3 2,-0.1 -0.973 21.6-114.6-128.0 137.7 -3.0 -7.7 6.1 31 32 A P E >> -A 74 0A 19 0, 0.0 4,-3.1 0, 0.0 3,-0.6 -0.427 36.5-110.8 -58.1 151.3 -5.8 -9.7 4.3 32 33 A F H 3> S+ 0 0 38 41,-2.3 4,-3.0 1,-0.3 5,-0.2 0.875 114.2 44.7 -54.8 -53.3 -7.1 -8.0 1.1 33 34 A Q H 3> S+ 0 0 116 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.791 116.8 46.7 -66.1 -29.2 -10.6 -7.0 2.4 34 35 A E H <> S+ 0 0 97 -3,-0.6 4,-1.6 2,-0.2 -2,-0.2 0.890 112.4 48.4 -81.6 -40.6 -9.2 -5.8 5.7 35 36 A L H X S+ 0 0 0 -4,-3.1 4,-2.4 2,-0.2 3,-0.4 0.933 112.2 51.3 -58.7 -45.2 -6.4 -3.8 4.1 36 37 A L H X S+ 0 0 16 -4,-3.0 4,-2.9 -5,-0.3 -2,-0.2 0.866 106.3 54.2 -59.9 -38.0 -9.1 -2.4 1.7 37 38 A N H X S+ 0 0 68 -4,-1.4 4,-1.7 2,-0.2 -1,-0.3 0.818 109.2 48.1 -68.3 -32.2 -11.2 -1.5 4.8 38 39 A E H X S+ 0 0 64 -4,-1.6 4,-2.2 -3,-0.4 -2,-0.2 0.886 111.7 49.0 -73.5 -39.8 -8.3 0.4 6.2 39 40 A I H X S+ 0 0 1 -4,-2.4 4,-2.5 2,-0.2 5,-0.2 0.922 110.2 52.7 -61.4 -43.7 -7.8 2.2 2.8 40 41 A A H X>S+ 0 0 2 -4,-2.9 5,-2.9 1,-0.2 4,-1.2 0.905 111.3 46.1 -55.6 -44.5 -11.5 3.0 2.8 41 42 A S H <5S+ 0 0 82 -4,-1.7 -1,-0.2 3,-0.2 -2,-0.2 0.839 108.8 55.0 -70.6 -36.2 -11.1 4.5 6.2 42 43 A L H <5S+ 0 0 36 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.922 113.3 42.3 -64.1 -41.5 -8.0 6.4 5.2 43 44 A L H <5S- 0 0 52 -4,-2.5 -1,-0.2 -5,-0.1 -2,-0.2 0.712 112.0-123.4 -79.1 -19.2 -9.9 8.0 2.4 44 45 A G T <5S+ 0 0 67 -4,-1.2 2,-0.2 1,-0.3 -3,-0.2 0.745 70.8 113.9 83.1 26.7 -13.0 8.5 4.5 45 46 A V S - 0 0 109 -2,-0.2 3,-1.7 1,-0.1 4,-0.4 -0.761 32.1-130.6 -87.2 137.3 -17.3 3.4 2.0 47 48 A K G > S+ 0 0 71 -2,-0.4 3,-0.8 1,-0.3 4,-0.3 0.775 106.2 62.7 -64.7 -24.9 -15.5 0.7 0.1 48 49 A E G > S+ 0 0 112 1,-0.2 3,-0.8 2,-0.2 -1,-0.3 0.699 95.8 59.8 -70.3 -23.0 -18.6 0.1 -2.1 49 50 A E G < S+ 0 0 124 -3,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.607 87.5 73.7 -85.9 -10.7 -18.3 3.7 -3.4 50 51 A L G X + 0 0 17 -3,-0.8 3,-3.4 -4,-0.4 -1,-0.2 0.742 65.9 153.5 -73.3 -16.4 -14.9 2.9 -4.8 51 52 A G T X> S+ 0 0 43 -3,-0.8 3,-2.5 1,-0.3 4,-0.9 -0.015 73.1 23.4 22.4-106.3 -16.5 0.8 -7.6 52 53 A D H 3> S+ 0 0 114 1,-0.3 4,-2.5 2,-0.2 -1,-0.3 0.741 118.7 64.9 -45.0 -33.8 -14.0 1.0 -10.5 53 54 A R H <> S+ 0 0 140 -3,-3.4 4,-2.7 2,-0.2 -1,-0.3 0.714 95.7 58.8 -71.8 -17.5 -11.2 1.7 -8.0 54 55 A I H <> S+ 0 0 48 -3,-2.5 4,-3.0 2,-0.2 -2,-0.2 0.963 111.6 37.6 -72.8 -52.3 -11.7 -1.7 -6.4 55 56 A A H X S+ 0 0 60 -4,-0.9 4,-2.8 2,-0.2 5,-0.2 0.864 119.2 51.0 -67.1 -37.0 -11.0 -3.6 -9.6 56 57 A Q H X S+ 0 0 89 -4,-2.5 4,-3.5 2,-0.2 5,-0.2 0.963 111.9 46.0 -62.9 -54.3 -8.3 -1.0 -10.4 57 58 A F H X S+ 0 0 5 -4,-2.7 4,-3.5 2,-0.2 5,-0.3 0.924 114.8 48.4 -53.1 -49.1 -6.7 -1.4 -7.0 58 59 A Y H X S+ 0 0 118 -4,-3.0 4,-2.5 2,-0.2 -2,-0.2 0.953 116.2 41.6 -59.0 -52.8 -6.9 -5.2 -7.3 59 60 A T H X S+ 0 0 79 -4,-2.8 4,-0.9 2,-0.2 -2,-0.2 0.948 118.9 46.4 -61.2 -46.6 -5.4 -5.3 -10.8 60 61 A D H >< S+ 0 0 52 -4,-3.5 3,-0.9 -5,-0.2 4,-0.4 0.958 118.2 40.6 -59.5 -54.6 -2.8 -2.6 -9.9 61 62 A L H >< S+ 0 0 1 -4,-3.5 3,-0.5 1,-0.3 -1,-0.2 0.825 110.7 56.5 -66.4 -39.2 -1.7 -4.2 -6.6 62 63 A N H 3< S+ 0 0 55 -4,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.640 119.1 32.2 -74.4 -14.6 -1.8 -7.8 -7.8 63 64 A I T << S+ 0 0 139 -3,-0.9 -1,-0.2 -4,-0.9 -2,-0.2 0.273 97.6 130.8-116.9 5.1 0.7 -7.0 -10.6 64 65 A D < - 0 0 30 -3,-0.5 -3,-0.1 -4,-0.4 -4,-0.0 -0.041 64.9-130.8 -59.2 155.9 2.5 -4.3 -8.5 65 66 A G S S+ 0 0 45 3,-0.0 2,-0.2 0, 0.0 -1,-0.1 0.604 97.7 56.5 -82.8 -18.4 6.2 -4.0 -8.1 66 67 A R S S+ 0 0 33 -5,-0.1 11,-0.1 11,-0.0 -46,-0.0 -0.466 87.6 49.2 -96.6-177.0 5.6 -3.7 -4.4 67 68 A F - 0 0 12 -2,-0.2 2,-0.3 1,-0.1 10,-0.2 0.464 51.8-151.5 62.3 146.3 3.6 -6.2 -2.2 68 69 A L E -B 76 0A 47 8,-2.1 8,-2.1 0, 0.0 2,-0.4 -0.922 18.8-127.7-144.2 128.5 3.9 -10.0 -1.9 69 70 A A E -B 75 0A 48 -2,-0.3 6,-0.2 6,-0.2 4,-0.1 -0.707 19.6-161.7 -83.3 133.1 1.0 -12.2 -0.9 70 71 A L S S- 0 0 80 4,-0.9 -1,-0.2 -2,-0.4 5,-0.1 0.971 74.5 -14.7 -78.1 -84.4 1.8 -14.5 2.0 71 72 A S S S- 0 0 113 4,-0.0 -2,-0.1 3,-0.0 4,-0.0 0.930 111.2 -79.0 -90.8 -61.3 -0.6 -17.4 2.3 72 73 A D S S+ 0 0 133 3,-0.0 -2,-0.0 0, 0.0 0, 0.0 0.150 117.8 41.5-162.0 -61.6 -3.3 -16.2 -0.1 73 74 A Q S S+ 0 0 125 -42,-0.1 -41,-2.3 -4,-0.1 2,-0.2 0.843 102.9 77.4 -69.3 -38.5 -5.7 -13.6 1.1 74 75 A T E -A 31 0A 26 -43,-0.3 -4,-0.9 -42,-0.1 2,-0.3 -0.466 63.0-159.2 -73.1 147.5 -3.1 -11.6 3.0 75 76 A W E -AB 30 69A 30 -45,-3.2 -45,-2.5 -6,-0.2 2,-0.4 -0.880 7.0-164.9-124.1 149.7 -0.7 -9.2 1.4 76 77 A G E - B 0 68A 0 -8,-2.1 -8,-2.1 -2,-0.3 2,-0.2 -0.980 26.3-105.2-138.5 149.8 2.5 -8.0 2.8 77 78 A L > - 0 0 1 -2,-0.4 3,-0.7 -49,-0.3 -57,-0.0 -0.509 24.4-136.1 -73.0 143.4 4.9 -5.3 2.1 78 79 A R G > S+ 0 0 67 1,-0.2 3,-1.4 -2,-0.2 -1,-0.1 0.626 85.0 89.5 -74.6 -11.9 8.1 -6.4 0.4 79 80 A S G 3 + 0 0 0 1,-0.3 8,-2.3 7,-0.1 9,-0.2 0.511 65.7 79.9 -73.0 -1.0 10.4 -4.2 2.5 80 81 A W G < S+ 0 0 74 -3,-0.7 -1,-0.3 6,-0.2 6,-0.1 0.341 97.7 46.2 -90.9 9.6 10.8 -6.9 5.1 81 82 A Y S < S- 0 0 93 -3,-1.4 4,-0.3 4,-0.3 6,-0.2 -0.914 106.3 -71.9-136.4 163.3 13.4 -8.5 2.9 82 83 A P S S+ 0 0 105 0, 0.0 -2,-0.1 0, 0.0 4,-0.1 -0.219 78.6 98.2 -55.9 145.7 16.3 -7.0 0.8 83 84 A Y S S- 0 0 74 -4,-0.1 3,-0.1 0, 0.0 -4,-0.1 -0.374 102.8 -28.9 177.8 -70.3 15.9 -4.8 -2.3 84 85 A D S S+ 0 0 30 1,-0.4 2,-0.2 10,-0.0 -5,-0.1 0.312 131.5 24.5-147.2 10.7 16.1 -1.0 -1.6 85 86 A Q - 0 0 7 -4,-0.3 2,-1.0 -7,-0.1 -1,-0.4 -0.786 59.8-153.2-173.5 117.7 14.9 -0.7 1.9 86 87 A L S S- 0 0 114 -2,-0.2 -6,-0.2 -3,-0.1 -7,-0.1 -0.868 82.7 -47.7 -98.9 85.1 14.9 -3.4 4.7 87 88 A D S S+ 0 0 62 -8,-2.3 2,-0.4 -2,-1.0 -7,-0.1 0.563 111.2 123.5 68.9 13.5 12.0 -2.2 6.9 88 89 A E > - 0 0 97 -9,-0.2 3,-0.6 1,-0.1 4,-0.2 -0.876 67.2-138.2-112.6 141.6 13.3 1.2 6.8 89 90 A E T 3 + 0 0 68 -2,-0.4 -1,-0.1 1,-0.3 -2,-0.0 0.093 69.7 120.6 -80.7 21.3 11.3 4.3 5.6 90 91 A T T 3 S+ 0 0 95 1,-0.2 -1,-0.3 -4,-0.0 -5,-0.1 0.702 81.6 35.4 -59.8 -19.3 14.5 5.4 3.9 91 92 A Q S < S- 0 0 67 -3,-0.6 4,-0.2 3,-0.0 -1,-0.2 0.857 85.6-156.3-105.7 -49.1 12.6 5.3 0.6 92 93 A L S S- 0 0 53 -4,-0.2 3,-0.2 2,-0.1 -71,-0.1 0.985 81.6 -6.4 61.4 89.2 9.0 6.5 1.4 93 94 A E S S- 0 0 6 1,-0.2 2,-1.5 2,-0.1 3,-0.3 0.938 91.6-125.4 49.8 105.2 7.0 5.0 -1.4 94 95 A H + 0 0 29 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.551 50.9 153.5 -84.4 92.9 9.7 3.6 -3.5 95 96 A H - 0 0 118 -2,-1.5 -1,-0.2 -3,-0.2 -2,-0.1 0.770 37.4-158.5 -81.5 -28.0 9.1 5.0 -7.0 96 97 A H - 0 0 84 -3,-0.3 -2,-0.1 -5,-0.1 -5,-0.0 0.960 5.7-148.0 52.4 74.2 12.9 4.4 -7.3 97 98 A H S S- 0 0 187 2,-0.1 -1,-0.1 1,-0.1 -3,-0.0 0.765 71.8 -43.3 -51.1 -34.4 13.4 7.0 -10.2 98 99 A H 0 0 154 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.143 360.0 360.0-156.9 -55.9 16.2 4.9 -11.7 99 100 A H 0 0 178 -15,-0.0 -2,-0.1 0, 0.0 -3,-0.1 -0.649 360.0 360.0-130.5 360.0 18.4 3.7 -8.9