==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 16-DEC-09 2KRE . COMPND 2 MOLECULE: UBIQUITIN CONJUGATION FACTOR E4 B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.NOMINE,E.WASIELEWSKI,M.BOTUYAN,G.MER . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7841.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1203 A G 0 0 88 0, 0.0 2,-0.2 0, 0.0 18,-0.1 0.000 360.0 360.0 360.0-102.9 -9.0 17.1 7.0 2 1204 A S - 0 0 71 1,-0.2 3,-0.1 19,-0.0 15,-0.0 -0.712 360.0-155.3-165.7 108.1 -12.3 16.4 5.1 3 1205 A H - 0 0 140 -2,-0.2 2,-0.3 1,-0.2 -1,-0.2 0.920 62.5 -51.8 -46.4 -93.9 -13.6 18.1 2.0 4 1206 A K - 0 0 99 1,-0.2 -1,-0.2 8,-0.1 3,-0.1 -0.859 36.8-131.9-143.3 176.9 -17.3 17.8 2.2 5 1207 A F S S+ 0 0 140 1,-0.3 -1,-0.2 3,-0.3 2,-0.2 0.826 81.7 19.7 -96.8 -85.1 -20.0 15.1 2.7 6 1208 A A S S- 0 0 47 2,-0.2 -1,-0.3 1,-0.1 92,-0.0 -0.539 94.0 -92.8 -88.6 156.2 -22.9 15.3 0.1 7 1209 A E S S+ 0 0 171 -2,-0.2 2,-1.2 1,-0.1 -1,-0.1 0.706 95.4 118.1 -38.1 -19.3 -22.6 17.0 -3.3 8 1210 A K - 0 0 177 1,-0.1 -3,-0.3 -4,-0.0 -2,-0.2 -0.344 67.6-140.3 -56.8 93.4 -24.0 19.9 -1.2 9 1211 A V + 0 0 126 -2,-1.2 2,-0.2 1,-0.1 -1,-0.1 -0.324 47.8 120.9 -59.6 135.5 -21.1 22.3 -1.7 10 1212 A E - 0 0 126 -2,-0.0 2,-0.3 3,-0.0 -1,-0.1 -0.561 54.3 -76.7-159.5-135.3 -20.3 24.2 1.5 11 1213 A E - 0 0 127 -2,-0.2 2,-2.5 0, 0.0 3,-0.2 -0.971 47.6 -84.2-147.6 160.8 -17.4 24.7 4.0 12 1214 A I S S+ 0 0 115 -2,-0.3 3,-0.1 1,-0.2 -8,-0.1 -0.410 92.5 100.2 -67.6 78.8 -15.6 22.9 6.8 13 1215 A V + 0 0 101 -2,-2.5 2,-0.4 1,-0.2 -1,-0.2 0.469 46.4 73.5-124.0 -91.3 -18.1 24.0 9.5 14 1216 A A S S- 0 0 86 -3,-0.2 -1,-0.2 1,-0.1 0, 0.0 0.009 81.6-142.6 -34.6 84.4 -20.9 21.8 10.8 15 1217 A K + 0 0 191 -2,-0.4 -1,-0.1 1,-0.1 4,-0.1 -0.216 45.8 144.3 -56.3 144.8 -18.4 19.6 12.8 16 1218 A N S S+ 0 0 109 2,-0.3 -1,-0.1 -3,-0.0 3,-0.1 0.303 73.3 30.3-161.0 -6.1 -19.2 15.9 12.8 17 1219 A A S S- 0 0 37 1,-0.5 3,-0.1 -15,-0.0 -2,-0.0 -0.288 91.6-120.3-160.4 63.2 -15.9 14.2 12.7 18 1220 A R - 0 0 227 1,-0.2 -1,-0.5 3,-0.0 -2,-0.3 0.086 61.0 -64.3 30.4-134.3 -13.1 16.2 14.4 19 1221 A A S S+ 0 0 77 -3,-0.1 2,-0.2 -4,-0.1 -1,-0.2 0.404 116.5 68.2-120.5 -5.3 -10.4 16.9 11.9 20 1222 A E S S- 0 0 104 -3,-0.1 2,-0.4 -18,-0.0 4,-0.1 -0.685 84.0-106.1-112.9 167.6 -9.3 13.3 11.3 21 1223 A I - 0 0 60 -2,-0.2 75,-0.1 2,-0.2 -2,-0.1 -0.757 34.5-108.5 -96.8 140.1 -11.0 10.3 9.6 22 1224 A D S S+ 0 0 84 -2,-0.4 2,-3.4 1,-0.2 3,-0.4 0.811 114.6 61.8 -25.1 -75.8 -12.3 7.4 11.7 23 1225 A Y + 0 0 28 72,-0.3 -1,-0.2 69,-0.2 -2,-0.2 -0.265 67.0 129.0 -59.2 72.9 -9.6 5.0 10.6 24 1226 A S S S+ 0 0 36 -2,-3.4 14,-0.6 -4,-0.1 -1,-0.2 0.575 85.6 2.2-103.7 -15.7 -7.0 7.2 12.2 25 1227 A D S S- 0 0 71 -3,-0.4 -2,-0.1 12,-0.1 7,-0.1 0.550 83.2-162.8-134.2 -55.9 -5.3 4.4 14.2 26 1228 A A - 0 0 16 -4,-0.2 3,-0.0 2,-0.1 5,-0.0 0.188 42.7 -45.9 78.0 156.9 -6.8 1.0 13.6 27 1229 A P S > S- 0 0 71 0, 0.0 2,-3.5 0, 0.0 4,-0.7 0.184 81.2 -72.0 -46.9 174.4 -6.4 -2.1 15.8 28 1230 A D T 4 S+ 0 0 124 1,-0.2 -2,-0.1 2,-0.1 8,-0.0 -0.132 126.2 59.0 -68.6 48.0 -3.0 -3.1 17.1 29 1231 A E T 4 S+ 0 0 132 -2,-3.5 -1,-0.2 7,-0.1 7,-0.1 0.402 97.4 40.9-135.3 -80.0 -2.2 -4.2 13.6 30 1232 A F T 4 S+ 0 0 22 8,-0.1 9,-1.5 2,-0.1 2,-0.2 0.541 101.0 102.2 -56.8 -2.1 -2.3 -1.7 10.7 31 1233 A R B < S-A 38 0A 74 -4,-0.7 7,-0.2 7,-0.2 6,-0.2 -0.588 86.7-105.1 -86.2 147.3 -0.7 0.6 13.3 32 1234 A D > - 0 0 4 5,-0.6 4,-3.1 -2,-0.2 19,-0.1 -0.557 22.3-131.7 -72.6 124.5 3.1 1.3 13.3 33 1235 A P T 4 S+ 0 0 66 0, 0.0 -1,-0.2 0, 0.0 18,-0.1 0.773 107.4 15.8 -45.3 -28.7 4.9 -0.7 16.0 34 1236 A L T 4 S+ 0 0 83 3,-0.1 -2,-0.1 34,-0.0 17,-0.0 0.767 136.2 38.2-111.5 -56.0 6.6 2.6 16.8 35 1237 A M T 4 S- 0 0 53 2,-0.1 3,-0.1 1,-0.1 16,-0.0 0.658 82.7-155.0 -72.5 -15.4 4.6 5.4 15.2 36 1238 A D < + 0 0 78 -4,-3.1 2,-0.3 1,-0.2 -1,-0.1 0.630 55.3 127.5 50.1 7.6 1.4 3.5 16.1 37 1239 A T S S- 0 0 65 -6,-0.2 -5,-0.6 1,-0.1 -1,-0.2 -0.730 78.8 -86.0 -97.3 145.0 0.2 5.5 13.1 38 1240 A L B -A 31 0A 40 -14,-0.6 -7,-0.2 -2,-0.3 -1,-0.1 -0.252 52.1-129.3 -49.6 112.2 -1.5 3.9 10.0 39 1241 A M - 0 0 11 -9,-1.5 -1,-0.1 1,-0.1 13,-0.0 -0.246 13.3-155.6 -64.0 154.4 1.4 2.9 7.8 40 1242 A T S S+ 0 0 89 1,-0.2 -1,-0.1 0, 0.0 12,-0.1 0.375 89.7 18.0-110.2 -0.7 1.4 4.0 4.2 41 1243 A D S S- 0 0 40 2,-0.1 12,-2.5 44,-0.0 2,-0.5 -0.471 75.8-154.5-170.7 86.7 3.7 1.1 3.1 42 1244 A P E +B 52 0B 6 0, 0.0 39,-1.9 0, 0.0 2,-0.3 -0.586 22.9 170.7 -74.8 117.0 4.1 -1.9 5.4 43 1245 A V E -BC 51 80B 13 8,-2.2 8,-1.7 -2,-0.5 2,-0.4 -0.934 31.7-120.1-127.2 149.9 7.4 -3.7 4.9 44 1246 A R E -BC 50 79B 135 35,-3.6 35,-2.1 -2,-0.3 6,-0.2 -0.763 24.6-153.2 -93.1 131.7 9.1 -6.5 6.8 45 1247 A L E >> -B 49 0B 4 4,-1.7 3,-1.9 -2,-0.4 4,-0.6 -0.742 27.0-113.8-102.3 150.3 12.6 -5.8 8.3 46 1248 A P T 34 S+ 0 0 80 0, 0.0 -1,-0.1 0, 0.0 27,-0.1 0.884 115.5 64.2 -46.3 -46.1 15.2 -8.4 9.0 47 1249 A S T 34 S- 0 0 38 25,-0.1 26,-0.0 24,-0.1 25,-0.0 0.847 123.4-105.3 -48.3 -36.6 14.9 -7.8 12.7 48 1250 A G T <4 S+ 0 0 51 -3,-1.9 2,-0.4 1,-0.3 -1,-0.1 0.736 78.7 121.0 110.9 41.0 11.4 -9.1 12.3 49 1251 A T E < -B 45 0B 31 -4,-0.6 -4,-1.7 -6,-0.0 2,-0.5 -0.999 50.7-141.9-137.4 136.1 9.2 -5.9 12.5 50 1252 A I E +B 44 0B 58 -2,-0.4 2,-0.2 -6,-0.2 -6,-0.2 -0.848 38.0 141.7-100.1 125.8 6.8 -4.4 10.1 51 1253 A M E -B 43 0B 6 -8,-1.7 -8,-2.2 -2,-0.5 2,-0.8 -0.690 56.3 -60.9-142.1-165.8 6.7 -0.6 9.7 52 1254 A D E > -B 42 0B 5 -2,-0.2 4,-1.5 -10,-0.2 3,-0.4 -0.788 33.7-142.4 -93.2 109.0 6.3 2.2 7.2 53 1255 A R H > S+ 0 0 68 -12,-2.5 4,-0.8 -2,-0.8 -1,-0.2 0.688 103.8 60.8 -39.1 -17.1 9.1 2.0 4.5 54 1256 A S H >> S+ 0 0 64 2,-0.2 3,-1.9 -13,-0.2 4,-1.1 0.977 97.0 49.0 -77.5 -62.8 8.7 5.8 5.0 55 1257 A I H 3> S+ 0 0 49 -3,-0.4 4,-0.9 1,-0.3 -2,-0.2 0.693 112.8 55.9 -50.7 -15.3 9.6 6.2 8.6 56 1258 A I H 3X S+ 0 0 2 -4,-1.5 4,-1.8 2,-0.2 -1,-0.3 0.797 92.1 68.3 -87.1 -32.6 12.5 4.1 7.6 57 1259 A L H << S+ 0 0 112 -3,-1.9 3,-0.3 -4,-0.8 -2,-0.2 0.941 110.9 33.0 -51.2 -54.0 13.7 6.4 4.8 58 1260 A R H >X S+ 0 0 165 -4,-1.1 3,-3.5 1,-0.2 4,-1.4 0.882 107.6 71.0 -70.8 -39.0 14.7 9.1 7.3 59 1261 A H H 3< S+ 0 0 21 -4,-0.9 6,-0.3 -5,-0.3 4,-0.2 0.847 95.7 53.5 -44.5 -41.6 15.7 6.4 9.9 60 1262 A L T 3< S+ 0 0 50 -4,-1.8 -1,-0.3 -3,-0.3 -2,-0.2 0.592 104.9 57.3 -72.7 -9.9 18.7 5.6 7.6 61 1263 A L T <4 S+ 0 0 154 -3,-3.5 -2,-0.2 2,-0.2 -1,-0.2 0.829 123.2 19.2 -88.8 -36.2 19.7 9.3 7.7 62 1264 A N S < S+ 0 0 111 -4,-1.4 -2,-0.2 1,-0.3 -1,-0.1 -0.068 141.9 9.1-124.3 32.7 20.0 9.6 11.5 63 1265 A S - 0 0 33 -4,-0.2 -1,-0.3 -5,-0.2 -2,-0.2 -0.003 50.9-163.9 153.2 95.4 20.4 6.0 12.5 64 1266 A P S S+ 0 0 72 0, 0.0 9,-4.3 0, 0.0 2,-0.5 0.104 71.8 91.4 -81.7 24.2 20.9 3.0 10.2 65 1267 A T B S-D 72 0C 46 7,-0.3 7,-0.3 -6,-0.3 5,-0.2 -0.979 94.3 -90.9-126.6 122.4 19.9 0.7 13.1 66 1268 A D - 0 0 1 5,-3.2 4,-0.2 -2,-0.5 -1,-0.1 0.228 32.9-125.5 -22.4 142.9 16.3 -0.4 13.7 67 1269 A P S S+ 0 0 54 0, 0.0 -1,-0.2 0, 0.0 -11,-0.0 0.565 100.0 42.2 -75.9 -8.5 14.5 2.0 16.1 68 1270 A F S S+ 0 0 82 3,-0.1 2,-3.2 1,-0.1 -3,-0.0 0.607 123.8 17.1-102.4-105.9 13.7 -0.9 18.4 69 1271 A N S S- 0 0 81 1,-0.2 -3,-0.1 2,-0.0 -1,-0.1 0.073 100.7-117.6 -62.1 35.5 16.3 -3.7 19.2 70 1272 A R + 0 0 210 -2,-3.2 2,-0.4 -5,-0.2 -1,-0.2 0.805 59.5 162.8 24.7 63.3 18.9 -1.2 17.9 71 1273 A Q - 0 0 102 1,-0.0 -5,-3.2 -5,-0.0 -1,-0.1 -0.922 51.1 -89.8-114.0 135.1 19.8 -3.6 15.1 72 1274 A T B -D 65 0C 116 -2,-0.4 2,-0.5 -7,-0.3 -7,-0.3 -0.092 47.7-154.4 -39.9 120.5 21.7 -2.7 12.0 73 1275 A L - 0 0 9 -9,-4.3 2,-0.5 -14,-0.1 -1,-0.1 -0.911 14.1-176.0-109.2 128.2 19.0 -1.7 9.5 74 1276 A T > - 0 0 68 -2,-0.5 3,-1.1 3,-0.1 -9,-0.0 -0.942 17.1-140.9-129.0 112.9 19.6 -2.0 5.8 75 1277 A E T 3 S+ 0 0 83 -2,-0.5 2,-0.6 1,-0.2 -30,-0.0 -0.036 88.4 34.8 -59.4 170.3 17.1 -0.8 3.2 76 1278 A S T 3 S+ 0 0 73 1,-0.2 -1,-0.2 3,-0.0 -2,-0.0 0.120 101.6 84.6 69.8 -28.0 16.6 -2.9 0.1 77 1279 A M S < S+ 0 0 131 -3,-1.1 2,-0.3 -2,-0.6 -1,-0.2 0.041 75.1 95.9 -92.2 26.9 17.2 -5.9 2.3 78 1280 A L S S- 0 0 22 -33,-0.1 -33,-0.2 -32,-0.1 -3,-0.0 -0.764 72.5-124.9-115.1 161.7 13.5 -5.8 3.4 79 1281 A E E -C 44 0B 118 -35,-2.1 -35,-3.6 -2,-0.3 2,-0.1 -0.922 24.0-130.8-109.8 124.4 10.5 -7.8 2.2 80 1282 A P E -C 43 0B 90 0, 0.0 -37,-0.2 0, 0.0 -35,-0.0 -0.462 10.7-151.5 -73.5 141.3 7.4 -5.8 1.0 81 1283 A V >> + 0 0 25 -39,-1.9 4,-0.8 1,-0.2 3,-0.6 -0.818 28.4 158.7-117.2 91.3 4.0 -6.9 2.4 82 1284 A P H 3> + 0 0 89 0, 0.0 4,-1.1 0, 0.0 5,-0.2 0.809 67.5 74.8 -79.7 -31.8 1.2 -6.0 -0.1 83 1285 A E H 3> S+ 0 0 144 1,-0.2 4,-0.6 2,-0.2 -2,-0.0 0.615 98.0 54.3 -57.4 -8.2 -1.2 -8.5 1.3 84 1286 A L H <> S+ 0 0 48 -3,-0.6 4,-2.5 -42,-0.2 -1,-0.2 0.910 96.1 59.6 -90.2 -55.5 -1.5 -5.9 4.0 85 1287 A K H X S+ 0 0 68 -4,-0.8 4,-2.5 1,-0.2 3,-0.5 0.902 105.1 49.6 -36.4 -69.7 -2.3 -2.8 2.0 86 1288 A E H X S+ 0 0 116 -4,-1.1 4,-2.3 1,-0.3 -1,-0.2 0.889 110.1 51.4 -38.2 -57.0 -5.5 -4.2 0.6 87 1289 A Q H X S+ 0 0 63 -4,-0.6 4,-1.7 -5,-0.2 5,-0.4 0.917 111.0 48.7 -48.8 -49.4 -6.7 -5.3 4.1 88 1290 A I H X S+ 0 0 2 -4,-2.5 4,-1.8 -3,-0.5 5,-0.3 0.957 111.4 47.5 -56.4 -55.1 -6.0 -1.7 5.3 89 1291 A Q H X S+ 0 0 82 -4,-2.5 4,-0.8 -5,-0.2 -1,-0.2 0.794 114.9 52.1 -57.4 -29.1 -7.9 -0.1 2.5 90 1292 A A H >X S+ 0 0 43 -4,-2.3 3,-2.1 -5,-0.4 4,-1.8 0.987 110.4 37.6 -70.9 -80.7 -10.7 -2.6 3.1 91 1293 A W H 3< S+ 0 0 48 -4,-1.7 -2,-0.2 1,-0.3 -1,-0.1 0.770 122.7 48.8 -44.2 -29.7 -11.6 -2.4 6.8 92 1294 A M H >< S+ 0 0 19 -4,-1.8 3,-0.8 -5,-0.4 -1,-0.3 0.761 105.4 58.6 -83.7 -24.9 -11.0 1.3 6.5 93 1295 A R H XX S+ 0 0 147 -3,-2.1 3,-3.0 -4,-0.8 4,-1.0 0.957 93.1 62.4 -67.4 -51.5 -13.2 1.6 3.4 94 1296 A E T 3< S+ 0 0 134 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.1 0.580 107.6 50.7 -52.9 -2.6 -16.3 0.2 5.1 95 1297 A K T <4 S+ 0 0 68 -3,-0.8 -1,-0.3 -5,-0.3 -72,-0.3 -0.102 100.5 64.1-125.4 32.6 -15.8 3.4 7.2 96 1298 A Q T <4 + 0 0 37 -3,-3.0 -2,-0.2 -74,-0.1 -3,-0.1 0.699 50.8 169.3-118.7 -52.8 -15.5 5.8 4.3 97 1299 A N < + 0 0 134 -4,-1.0 2,-0.1 1,-0.1 -3,-0.1 0.836 57.6 95.1 35.2 44.8 -18.8 5.9 2.5 98 1300 A S + 0 0 47 -5,-0.1 2,-1.3 -92,-0.0 -1,-0.1 -0.492 47.3 177.2-163.4 83.9 -17.4 8.9 0.6 99 1301 A D 0 0 132 1,-0.1 -2,-0.0 -2,-0.1 -3,-0.0 -0.665 360.0 360.0 -93.7 81.9 -15.7 8.4 -2.7 100 1302 A H 0 0 175 -2,-1.3 -1,-0.1 -96,-0.1 -95,-0.0 -0.020 360.0 360.0 -73.8 360.0 -14.8 11.9 -3.7